AUTHOR=Xi Li , Song Yumin , Qin Xinxi , Han Jincheng , Chang Yung-Fu 

TITLE=Microbiome Analysis Reveals the Dynamic Alternations in Gut Microbiota of Diarrheal Giraffa camelopardalis

JOURNAL=Frontiers in Veterinary Science

VOLUME=Volume 8 - 2021

YEAR=2021

URL=https://www.frontiersin.org/journals/veterinary-science/articles/10.3389/fvets.2021.649372

DOI=10.3389/fvets.2021.649372

ISSN=2297-1769

ABSTRACT=The ruminant gut microbial community's importance has been widely acknowledged due to its positive roles in physiology, metabolism, and health maintenance. Diarrhea has been demonstrated to cause adverse effects on gastrointestinal health and intestinal microecosystem, but studies regarding diarrheal influence on gut microbiota in Giraffa camelopardalis have been insufficient to date. Here, this study was performed to investigate and compare gut microbial composition and variability between healthy and diarrheic Giraffa camelopardalis. The results showed that the gut microbial community of diarrheal Giraffa camelopardalis displayed a significant decrease in alpha diversity, accompanied by distinct alterations in taxonomic compositions. Bacterial taxonomic analysis indicated that the dominant bacterial phyla (Proteobacteria, Bacteroidetes and Firmicutes) and genera (Escherichia Shigella and Acinetobacter) of the both groups were the same but different in relative abundance. Specifically, the proportion of Proteobacteria in the diarrheal Giraffa camelopardalis was increased as compared to healthy populations, whereas Bacteroidetes, Firmicutes, Tenericutes and Spirochaetes were significantly decreased. Moreover, the relative abundance of one bacterial genera (Comamonas) dramatically increased in diarrheic Giraffa camelopardalis, whereas the relative richness of 18 bacterial genera decreased compared to healthy populations. Among them, two bacterial genera (Ruminiclostridium_5 and Blautia) cannot be detected in the gut bacterial community of diarrheal Giraffa camelopardalis. In summary, this study demonstrated that diarrhea could significantly change the gut microbial composition and diversity in Giraffa camelopardalis by increasing the proportion of pathogenic to beneficial bacteria. Moreover, this study first characterized the distribution of gut microbial communities in Giraffa camelopardalis with different health states. It contributed to providing a theoretical basis for establishing a prevention and treatment system for Giraffa camelopardalis diarrhea.