<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Vet. Sci.</journal-id>
<journal-title>Frontiers in Veterinary Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Vet. Sci.</abbrev-journal-title>
<issn pub-type="epub">2297-1769</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fvets.2023.1327424</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Veterinary Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Molecular identification of <italic>Haemonchus contortus</italic> in sheep from Upper Egypt</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Mohamed</surname>
<given-names>Sara Abdel-Aal</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dyab</surname>
<given-names>Ahmed Kamal</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1504676/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Raya-&#x00C1;lvarez</surname>
<given-names>Enrique</given-names>
</name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Abdel-Aziz</surname>
<given-names>Fatma Mohamed</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Osman</surname>
<given-names>Fathy</given-names>
</name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2560331/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gareh</surname>
<given-names>Ahmed</given-names>
</name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2026869/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/project-administration/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Farag</surname>
<given-names>Alshimaa M. M.</given-names>
</name>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1514262/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Salman</surname>
<given-names>Doaa</given-names>
</name>
<xref ref-type="aff" rid="aff7"><sup>7</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>El-Khadragy</surname>
<given-names>Manal F.</given-names>
</name>
<xref ref-type="aff" rid="aff8"><sup>8</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1993092/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bravo-Barriga</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/890675/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Agil</surname>
<given-names>Ahmad</given-names>
</name>
<xref ref-type="aff" rid="aff10"><sup>10</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Elmahallawy</surname>
<given-names>Ehab Kotb</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup></xref>
<xref ref-type="aff" rid="aff11"><sup>11</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1025342/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Parasitology, Faculty of Veterinary Medicine, Assiut University</institution>, <addr-line>Assiut</addr-line>, <country>Egypt</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Parasitology, Faculty of Medicine, Assiut University</institution>, <addr-line>Assiut</addr-line>, <country>Egypt</country></aff>
<aff id="aff3"><sup>3</sup><institution>Rheumatology Department, Hospital Universitario San Cecilio, Av. de la Investigaci&#x00F3;n</institution>, <addr-line>Granada</addr-line>, <country>Spain</country></aff>
<aff id="aff4"><sup>4</sup><institution>Department of Parasitology, Animal Health Research Institute, Agriculture Research Center (ARC)</institution>, <addr-line>Giza</addr-line>, <country>Egypt</country></aff>
<aff id="aff5"><sup>5</sup><institution>Department of Parasitology, Faculty of Veterinary Medicine, Aswan University</institution>, <addr-line>Aswan</addr-line>, <country>Egypt</country></aff>
<aff id="aff6"><sup>6</sup><institution>Department of Internal Medicine and Infectious Diseases Faculty of Veterinary Medicine, Mansoura University</institution>, <addr-line>Mansoura</addr-line>, <country>Egypt</country></aff>
<aff id="aff7"><sup>7</sup><institution>Department of Animal Medicine, Faculty of Veterinary Medicine, Sohag University</institution>, <addr-line>Sohag</addr-line>, <country>Egypt</country></aff>
<aff id="aff8"><sup>8</sup><institution>Department of Biology, College of Science, Princess Nourah bint Abdulrahman University</institution>, <addr-line>Riyadh</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff9"><sup>9</sup><institution>Departamento de Sanidad Animal, Grupo de Investigaci&#x00F3;n en Salud Animal y Zoonosis (GISAZ), UIC Zoonosis y Enfermedades Emergentes (ENZOEM), Facultad de Veterinaria, Universidad de C&#x00F3;rdoba</institution>, <addr-line>C&#x00F3;rdoba</addr-line>, <country>Spain</country></aff>
<aff id="aff10"><sup>10</sup><institution>Department of Pharmacology, Biohealth Institute Granada (IBs Granada) and Neuroscience Institute, School of Medicine, University of Granada</institution>, <addr-line>Granada</addr-line>, <country>Spain</country></aff>
<aff id="aff11"><sup>11</sup><institution>Department of Zoonoses, Faculty of Veterinary Medicine, Sohag University</institution>, <addr-line>Sohag</addr-line>, <country>Egypt</country></aff>
<author-notes>
<fn id="fn0002" fn-type="edited-by"><p>Edited by: Vikrant Sudan, Guru Angad Dev Veterinary and Animal Sciences University, India</p></fn>
<fn id="fn0003" fn-type="edited-by"><p>Reviewed by: ThankGod Emmanuel Onyiche, University of Maiduguri, Nigeria</p>
<p>Alok Kumar Singh, Nanaji Deshmukh Veterinary Science University, India</p>
<p>Alok Dixit, Nanaji Deshmukh Veterinary Science University, India</p></fn>
<corresp id="c001">&#x002A;Correspondence: Ehab Kotb Elmahallawy, <email>eehaa@unileon.es</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>02</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1327424</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>10</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>12</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Mohamed, Dyab, Raya-&#x00C1;lvarez, Abdel-Aziz, Osman, Gareh, Farag, Salman, El-Khadragy, Bravo-Barriga, Agil and Elmahallawy.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Mohamed, Dyab, Raya-&#x00C1;lvarez, Abdel-Aziz, Osman, Gareh, Farag, Salman, El-Khadragy, Bravo-Barriga, Agil and Elmahallawy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p><italic>Haemonchus</italic> spp. are considered the most important strongylid nematodes with a worldwide distribution. The parasite&#x2019;s blood-sucking nature can lead to severe anemia in infected animals. Despite its widespread impact, there is a dearth of comprehensive data on morphological and molecular identification methods for <italic>Haemonchus</italic> spp. in sheep from Upper Egypt. To address this gap, our current study aimed to assess the prevalence of <italic>Haemonchus</italic> spp. in 400 sheep fecal samples.</p>
</sec>
<sec>
<title>Methods</title>
<p>We employed microscopic examination and molecular techniques, using polymerase chain reaction (PCR) targeting the 18S gene for precise identification. Additionally, the potential risk factors associated with the infection by the parasite in sheep were explored.</p>
</sec>
<sec>
<title>Results</title>
<p>The study pointed out that 33.00% (132 of 400) of the examined sheep were infected with <italic>Haemonchus</italic> spp. Sheep age and seasonal variability were found to be significant factors (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) associated with the infection. Notably, sheep under 2&#x2009;years old exhibited a higher risk, with an infection rate of 43.75% (84 out of 192), than their older counterparts. Furthermore, all reported infections were exclusively observed during the cold season, constituting 58.93% (132 out of 224) of cases. By contrast, no statistically significant association (<italic>p</italic>&#x2009;&#x003E;&#x2009;0.05) was found between the sex of the examined sheep and the occurrence of haemonchosis. Employing molecular methods, we isolated and identified the parasite through PCR analysis of cultured larvae, which were then subsequently confirmed as Haemonchus contortus via phylogenetic analysis.</p>
</sec>
<sec>
<title>Discussion</title>
<p>The study concluded that there was a relatively high occurrence of <italic>H. contortu</italic>s among sheep from Upper Egypt. We recommend the implementation of stringent and effective control measures to combat the infection and safeguard livestock health.</p>
</sec>
</abstract>
<kwd-group>
<kwd>haemonchosis</kwd>
<kwd>morphological</kwd>
<kwd>molecular</kwd>
<kwd>sheep</kwd>
<kwd>Upper Egypt</kwd>
</kwd-group>
<contract-sponsor id="cn1">Princess Nourah bint Abdulrahman University<named-content content-type="fundref-id">10.13039/501100004242</named-content></contract-sponsor>
<contract-sponsor id="cn2">Princess Nourah bint Abdulrahman University<named-content content-type="fundref-id">10.13039/501100004242</named-content></contract-sponsor>
<counts>
<fig-count count="3"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="68"/>
<page-count count="10"/>
<word-count count="6701"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Parasitology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1</label>
<title>Introduction</title>
<p>Sheep are considered one of the most important small ruminant livestock globally (<xref ref-type="bibr" rid="ref1">1</xref>). They represent a major source of wool, meat, milk, and skins, which together form a vital component of the rural economy, mainly in arid and semi-arid areas (<xref ref-type="bibr" rid="ref2">2</xref>). In Egypt, sheep and goats are among the most important animals for meeting the requirements for meat for human consumption (<xref ref-type="bibr" rid="ref3">3</xref>). However, this industry is subjected to a wide variety of parasitic infections that affect the health status of animals, causing great losses in the livestock industry (<xref ref-type="bibr" rid="ref4">4</xref>). Among others, infection of sheep by gastrointestinal parasites (GIP) is one of the major health problems in the sheep industry, leading to a loss of plasma protein, alterations in protein metabolism, diarrhea, and a loss of body weight. Additionally, the infection by these parasites suppresses the immune system of the infected animals, which in turn makes them more susceptible to other pathogenic agents (<xref ref-type="bibr" rid="ref5">5</xref>).</p>
<p>Haemonchosis is regarded as a highly destructive disease that significantly reduces the productivity of infected sheep and has substantial economic consequences. This includes elevated levels of morbidity and mortality and increased management costs associated with implementing control measures (<xref ref-type="bibr" rid="ref6">6</xref>, <xref ref-type="bibr" rid="ref7">7</xref>). The disease is caused by <italic>Haemonchus</italic> spp. or barber&#x2019;s pole worm, which is considered a principal abomasal worm of ruminants with a worldwide distribution. Nearly 12 species have been recognized in domestic ruminants (<xref ref-type="bibr" rid="ref8">8</xref>). Among others, <italic>Haemonchus contortus</italic> is considered the nematode of greatest economic importance in small ruminants (<xref ref-type="bibr" rid="ref9">9</xref>) and extremely pathogenic in sheep (<xref ref-type="bibr" rid="ref10">10</xref>). Subclinical infection with <italic>H. contortus</italic> can lead to reduced weight gain and appetite. Moreover, heavy infection by these worms might result in the progression of various clinical signs that involve weight loss, submandibular edema, and diarrhea (<xref ref-type="bibr" rid="ref11">11</xref>). Additionally, these parasites are voracious blood suckers, and therefore, heavy infection by the parasite can cause lethal anemia and might lead to death in heavily infected animals (<xref ref-type="bibr" rid="ref12">12</xref>). Given its veterinary importance with regard to the health and productivity of sheep, periodical updates about the disease at a national level is very important for providing effective control measures for the disease.</p>
<p>Taken into account, <italic>Haemonchus</italic> spp. has a direct life cycle. The adult female inhabits the abomasum or intestine and then immature eggs pass in the stool. Later, immature eggs develop in the external environment and hatch to give first-stage larva (L1). Larvae nourishment is mainly based on bacteria, and then they molt to the second larval stage (L2) and undergo another molt to reach the infective third larval stage (L3). Sheep contract the infection through third-stage larvae (infective stage) during grazing, which then reach the final predilection site and develop to L5 (<xref ref-type="bibr" rid="ref13">13</xref>). Environmental conditions, mainly temperature and humidity, influence the survival of the larvae of <italic>Haemonchus</italic> (<xref ref-type="bibr" rid="ref14">14</xref>, <xref ref-type="bibr" rid="ref15">15</xref>). In this regard, cool and humid climatic conditions favor the survival of L3 for several months. By contrast, L3 might survive for a shorter time in warm weather due to the higher metabolic rate that speedily reduces energy reserves (<xref ref-type="bibr" rid="ref16">16</xref>, <xref ref-type="bibr" rid="ref17">17</xref>). The identification of <italic>Haemonchus</italic> spp. could be achieved by several approaches, including direct fecal smears, fecal flotation for detecting parasitic eggs, the rearing of eggs in culture to obtain L3, and postmortem examination to determine immature and adult worms (<xref ref-type="bibr" rid="ref18">18</xref>). However, these methods have low sensitivity and lack the ability to distinguish the circulating species/genotypes. On the other hand, fecal culture methods for the identification of nematode larvae followed by the screening of positive samples using PCR-based techniques possess many advantages and might help confirm the infection (<xref ref-type="bibr" rid="ref19">19</xref>). As shown in <xref ref-type="table" rid="tab1">Table 1</xref>, few epidemiological and molecular studies have explored the occurrence of <italic>Haemonchus</italic> spp. circulating in Sheep in Egypt, particularly in the upper part of the country (<xref ref-type="bibr" rid="ref19">19</xref>&#x2013;<xref ref-type="bibr" rid="ref36">36</xref>). Based on information provided by previous studies, this study was undertaken to morphologically and molecularly identify <italic>Haemonchus</italic> in sheep. Additionally, the research included a comprehensive review of previous studies on the various <italic>Haemonchus</italic> species circulating among sheep in Egypt.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption><p>Occurrence and genetic diversity of <italic>Haemonchus</italic> spp. reported in sheep in Egypt.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="middle">Area</th>
<th align="left" valign="middle">Detection method</th>
<th align="left" valign="middle">Frequency % (no. pos./total)</th>
<th align="left" valign="middle">Species identified</th>
<th align="left" valign="middle">Genotype (no.)</th>
<th align="center" valign="middle">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">PM</td>
<td align="left" valign="top">11.50 (36/312)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref20">20</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">PM</td>
<td align="left" valign="top">07.90 (15/189)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref21">21</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">CM</td>
<td align="left" valign="top">30.17(35/116)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref22">22</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM&#x0026;PM</td>
<td align="left" valign="top">18.00 (27/150)<break/>49.06 (26/53)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref23">23</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">CM&#x0026;PM</td>
<td align="left" valign="top">30.00 (95/319)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref24">24</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM</td>
<td align="left" valign="top">16.10 (196/1217)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref25">25</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">CM</td>
<td align="left" valign="top">14.20 (118/830)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref26">26</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM</td>
<td align="left" valign="top">23.62 (232/982)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> sp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref27">27</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">ELISA</td>
<td align="left" valign="top">00.00 (0/880)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref28">28</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">CM</td>
<td align="left" valign="top">43.30 (39/90)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref29">29</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">ELISA</td>
<td align="left" valign="top">44.62 (123/275)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref30">30</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM &#x0026; FC</td>
<td align="left" valign="top">33.75 (303/900)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref31">31</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM &#x0026; FC</td>
<td align="left" valign="top">26.00 (19/72)</td>
<td align="left" valign="top"><italic>Haemonchus</italic> spp.</td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref32">32</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">CM &#x0026; PM</td>
<td align="left" valign="top"><italic>H. contortus</italic> 3.5 (6/173)<break/><italic>H. placei</italic> 1.7% (3/173)</td>
<td align="left" valign="top"><italic>H. contortus</italic><break/><italic>H. placei</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref33">33</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Lower Egypt</td>
<td align="left" valign="top">PCR</td>
<td align="left" valign="top">26.50% (173/653)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref34">34</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM&#x0026;ELISA</td>
<td align="left" valign="top">27.10 (29/107)<break/>64.48 (69/107)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref35">35</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper, Lower Egypt</td>
<td align="left" valign="top">PCR</td>
<td align="left" valign="top">ND</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref19">19</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Upper Egypt</td>
<td align="left" valign="top">CM &#x0026; FC</td>
<td align="left" valign="top">17.83 (28/157)</td>
<td align="left" valign="top"><italic>H. contortus</italic></td>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref36">36</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>CM, Conventional Microscope; FC, Fecal Culture; PM, Postmortem; PCR, Polymerase Chain Reaction; ELISA, Enzyme Linked Immunosorbent Assay; ND, Not detected.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec sec-type="materials|methods" id="sec2">
<label>2</label>
<title>Materials and methods</title>
<sec id="sec3">
<label>2.1</label>
<title>Ethical considerations</title>
<p>The study procedures obtained the approval of the research ethical committee of the Faculty of Veterinary Medicine, Assiut University (approval number, 06/2023/0096).</p>
</sec>
<sec id="sec4">
<label>2.2</label>
<title>Study area and sample collection</title>
<p>The present study was conducted from February 2022 to January 2023 in Assiut Governorate, as depicted in <xref ref-type="fig" rid="fig1">Figure 1</xref>. A total of 400 rectal fecal samples were collected from sheep owned by small stakeholders participating in veterinary campaigns in Assiut Governorate. Each sample, ranging from 1 to 6&#x2009;g in size, was collected in a clean, dry, sterile, and labeled screw top plastic cup. Relevant information, such as the animals&#x2019; sex, age, and date of sample collection, was recorded. Subsequently, the samples were transported to the Parasitology Laboratory at the Faculty of Veterinary Medicine (Assiut University, Egypt) for further processing and examination.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption><p>Map of Egypt where the study area, Asyut Governorate, is located (in gray).</p></caption>
<graphic xlink:href="fvets-10-1327424-g001.tif"/>
</fig>
</sec>
<sec id="sec5">
<label>2.3</label>
<title>Macroscopic and microscopic examination of feces</title>
<p>The collected samples were carefully examined by the naked eye for their consistency and color, the presence of blood, mucus, and other unusual elements, and the existence of adult parasites and/or segments.</p>
<sec id="sec6">
<label>2.3.1</label>
<title>Simple salt floatation technique</title>
<p>This technique was performed as described by Kaufmann (<xref ref-type="bibr" rid="ref37">37</xref>). The fecal samples from the sheep were placed in a cup and then mixed thoroughly with saline solution. The mixture was poured through a wire mesh screen to remove large lumps. The suspension was transferred to a conical measure, filled with saline solution to the top, and allowed to settle for 30&#x2009;min. The supernatant was discarded carefully and the remaining sediment (10&#x2009;mL) was stirred, and a 2-ml sample was poured into a centrifuge tube. Then, saturated NaCl was added until a convex meniscus appeared at the top of the tube. Later, a square cover glass (19&#x2009;&#x00D7;&#x2009;19&#x2009;mm) was placed on the tube. The tube was centrifuged at 2,000&#x2009;rpm for 2&#x2013;3&#x2009;min. The cover glass was removed and the sample was placed on a slide and examined microscopically.</p>
</sec>
<sec id="sec7">
<label>2.3.2</label>
<title>Ordinary sedimentation technique</title>
<p>This step was performed according to the method described by Urquhart et al. (<xref ref-type="bibr" rid="ref38">38</xref>). Briefly, fecal material was mixed with saline solution (0.90%), strained through a 40&#x2009;&#x03BC;m nylon sieve, and then allowed to settle for 30&#x2009;min, after which the supernatant was decanted. The sediment was resuspended in saline solution, after which washing was repeated until a clear supernatant was obtained. A drop of the sediment was pipetted onto a glass slide, covered with a cover slip, and then examined using a microscope (10&#x00D7;).</p>
</sec>
<sec id="sec8">
<label>2.3.3</label>
<title>The formalin ether concentration technique</title>
<p>This step was carried out as described by Balakrishna et al. (<xref ref-type="bibr" rid="ref39">39</xref>). Fecal samples were emulsified in water (10&#x2009;mL), strained through two layers of gauze, and allowed to settle for 30&#x2009;min, after which the supernatant fluid was decanted. The sediment was then resuspended in saline solution, followed by washing until a clear supernatant was obtained. Later, 10.00% formal saline (7&#x2009;mL) was added to the sediment and allowed to stand for 30&#x2009;min. Then, ether (3&#x2009;mL) was added, and the tube was shaken vigorously and centrifuged at 2,000&#x2009;rpm for 2&#x2009;min, after which three layers formed. The three layers of the supernatant were poured off, and the sediment was used for slide preparation and examined microscopically.</p>
</sec>
<sec id="sec9">
<label>2.3.4</label>
<title>Fecal culture methods for the identification of nematode larvae</title>
<p>This step was performed according to the protocol described by Zajac and Garza (<xref ref-type="bibr" rid="ref40">40</xref>). Briefly, the moist fecal samples were disintegrated in a container using a spatula, until the required consistency was obtained. The sample container was closed and placed in an incubator at 27 &#x00B0;C for 7&#x2013;10&#x2009;days to obtain the larval stage. Water was added to the cultures approximately every 1&#x2013;2&#x2009;days if the mixture became too dry, and the cultures were exposed to air daily. Then, the larvae were recovered using the Baermann technique and examined and identified with a light microscope (<xref ref-type="bibr" rid="ref13">13</xref>, <xref ref-type="bibr" rid="ref41">41</xref>).</p>
</sec>
</sec>
<sec id="sec10">
<label>2.4</label>
<title>PCR and phylogenetic analysis</title>
<p>This step involved the extraction of DNA from larvae samples following the manufacturer&#x2019;s protocol supplied with a QIAamp DNA mini kit. Negative controls were included during DNA extraction to rule out any potential contamination. The primers were designed to amplify a specific internal fragment of the 18S gene, which is approximately 900 base pairs long. In accordance with the protocol (<xref ref-type="bibr" rid="ref42">42</xref>), the forward primer attached to a location approximately 100 base pairs inward from the 5&#x2032; end of the gene, while the reverse primer bound at a site approximately 700 base pairs inward from the 3&#x2032; end. The detailed information on primers sets and the cycling conditions during cPCR are shown in <xref rid="SM1" ref-type="supplementary-material">Supplementary Tables S1</xref>, <xref rid="SM1" ref-type="supplementary-material">S2</xref>. The reaction mixture (25&#x2009;&#x03BC;L) consisted of 12.5&#x2009;&#x03BC;L of Emerald Amp GT PCR mastermix (2x premix; Code No. RR310A), 1&#x2009;&#x03BC;m of each primer, and 5&#x2009;&#x03BC;L of DNA template. Millipore water was added to a total volume of 25&#x2009;&#x03BC;L. PCR products were size fractionated by electrophoresis in 2.00% agarose gels stained with 6&#x2009;&#x03BC;L GreenSafe (10&#x2009;mg/mL) for each 100&#x2009;mL gel. PCR products were purified using a QIAquick PCR Product extraction kit (Qiagen, Valencia). A Bigdye Terminator V3.1&#x2009;cycle sequencing kit (PerkinElmer) was used for the sequence reaction, which was then purified using a Centrisep spin column. PCR products linked to positive amplifications were purified and sequenced using an Applied Biosystems 3,130 genetic analyzer (HITACHI, Japan). Species-level identity was obtained considering a&#x2009;&#x003E;&#x2009;99% identity score using BLASTn (Mega-BLASTn option).<xref ref-type="fn" rid="fn0001"><sup>1</sup></xref> Only one nucleotide sequence obtained during this study was submitted to the NCBI database under the accession number OP984151 (<xref ref-type="bibr" rid="ref43">43</xref>). Multiple alignments were carried out using MAFFT version 7 (<xref ref-type="bibr" rid="ref44">44</xref>). For maximum likelihood (ML) phylogenetic analyses, the choice of the best-fitting evolutionary model was based on those defined using JModeltest2 (<xref ref-type="bibr" rid="ref45">45</xref>) on the basis of the Akaike information criterion. Tree construction was carried out using Mega 11 (<xref ref-type="bibr" rid="ref46">46</xref>). The evolutionary history was inferred by using the ML method and Tamura 3-parameter model (<xref ref-type="bibr" rid="ref47">47</xref>). The tree with the highest log likelihood (&#x2212;6790.54) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained automatically by applying the Neighbor-Joining and BioNJ algorithms to a matrix of pairwise distances estimated using the Tamura 3 parameter model and then selecting the topology with a superior log likelihood value. A discrete Gamma distribution was used to model evolutionary rate differences among sites [5 categories (+G, parameter&#x2009;=&#x2009;0.8209)]. The tree was drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 36 nucleotide sequences. There was a total of 1,405 positions in the final dataset. Bootstrap coefficients were calculated for 1,000 replicates, and only those with &#x003E;70% support are shown in the tree. The phylogenetic trees were manipulated for display using FigTree v.1.4.2 (<xref ref-type="bibr" rid="ref48">48</xref>&#x2013;<xref ref-type="bibr" rid="ref50">50</xref>).</p>
</sec>
<sec id="sec11">
<label>2.5</label>
<title>Statistical analysis</title>
<p>The resulting data were analyzed using Statistical Package for Social Sciences (SPSS; version 26). The qualitative variables were recorded and compared using a chi-square test. The prevalence of <italic>Haemonchus</italic> in sheep were estimated from the ratio of positives to the total number of samples, with the exact binomial confidence intervals of 95% based on the score method, which is derived from (<xref ref-type="bibr" rid="ref51">51</xref>). Logistic regression analyses were used to determine crude and adjusted odds ratios (OR) with corresponding 95% confidence intervals (95% CI) for factors associated with haemonchosis infection. A <italic>p</italic>-value &#x003C;0.05 was significant and <italic>p</italic>-values &#x003C;0.01 were highly significant.</p>
</sec>
</sec>
<sec sec-type="results" id="sec12">
<label>3</label>
<title>Results</title>
<sec id="sec13">
<label>3.1</label>
<title>Prevalence of <italic>Haemonchus</italic> spp. in the fecal samples of examined sheep and risk factors</title>
<p>In this study, the overall prevalence of <italic>Haemonchus</italic> spp. in examined fecal samples from sheep was 33.00% (CI: 28.57&#x2013;37.75; 132 of 400). Regarding age as a potential risk factor associated with the infection (<xref ref-type="table" rid="tab2">Table 2</xref>), <italic>Haemonchus</italic> was most prevalent in sheep aged &#x003C;2&#x2009;years (43.75%; CI: 36.92&#x2013;50.82) compared with those aged &#x003E;2&#x2009;years (23.08%; CI: 17.87&#x2013;29.26; <italic>p</italic> =&#x2009;0.028). Furthermore, the infection rate was higher in male animals (36.67%; CI: 28.58&#x2013;45.58) than in females (31.43%; CI: 26.27&#x2013;37.09) but no significant deviation (<italic>p</italic> &#x003E;&#x2009;0.05) was found. Additionally, the prevalence of <italic>Haemonchus</italic> spp. was significantly higher (<italic>p</italic> &#x003C;&#x2009;0.001) during the cold season, reaching 58.93% (CI: 52.39&#x2013;65.17; <xref ref-type="table" rid="tab2">Table 2</xref>).</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption><p>Prevalence of <italic>Haemonchus</italic> in fecal samples of the examined sheep in relation to sex, age, and season.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Variable</th>
<th align="center" valign="top">Total examined</th>
<th align="center" valign="top">Infected (%)</th>
<th align="center" valign="top">95% CI</th>
<th align="center" valign="top">OR (95% CI)</th>
<th align="center" valign="top"><italic>p</italic> value</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle" colspan="6">Age</td>
</tr>
<tr>
<td align="left" valign="middle">&#x003C; 2&#x2009;years</td>
<td align="center" valign="middle">192</td>
<td align="center" valign="middle">84 (43.75)</td>
<td align="center" valign="middle">36.92&#x2013;50.82</td>
<td align="center" valign="middle">2.59 (1.68&#x2013;3.99)</td>
<td align="center" valign="middle" rowspan="2">0.028<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle">&#x003E; 2&#x2009;years</td>
<td align="center" valign="middle">208</td>
<td align="center" valign="middle">48 (23.08)</td>
<td align="center" valign="middle">17.87&#x2013;29.26</td>
<td align="center" valign="middle"/>
</tr>
<tr>
<td align="left" valign="middle" colspan="6">Sex</td>
</tr>
<tr>
<td align="left" valign="middle">Male</td>
<td align="center" valign="middle">120</td>
<td align="center" valign="middle">44 (36.67)</td>
<td align="center" valign="middle">28.58&#x2013;45.58</td>
<td align="center" valign="middle">1.26 (0.81&#x2013;1.98)</td>
<td align="center" valign="middle" rowspan="2">0.61</td>
</tr>
<tr>
<td align="left" valign="middle">Female</td>
<td align="center" valign="middle">280</td>
<td align="center" valign="middle">88 (31.43)</td>
<td align="center" valign="middle">26.27&#x2013;37.09</td>
<td align="center" valign="middle"/>
</tr>
<tr>
<td align="left" valign="middle" colspan="6">Season</td>
</tr>
<tr>
<td align="left" valign="middle">Cold</td>
<td align="center" valign="middle">224</td>
<td align="center" valign="middle">132 (58.93)</td>
<td align="center" valign="middle">52.39&#x2013;65.17</td>
<td align="center" valign="middle">505.65 (31.11&#x2013;8219.78)</td>
<td align="center" valign="middle" rowspan="2">&#x003C;0.001<sup>&#x002A;&#x002A;&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle">Hot</td>
<td align="center" valign="middle">176</td>
<td align="center" valign="middle">0.00</td>
<td align="center" valign="middle">0.00&#x2013;2.14</td>
<td align="center" valign="middle"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05; &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.001.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="sec14">
<label>3.2</label>
<title>Morphological characteristics of the egg and larva of <italic>Haemonchus</italic> spp. encountered in the feces of sheep</title>
<p>As shown in <xref ref-type="fig" rid="fig2">Figure 2A</xref>, <italic>Haemonchus</italic> spp. eggs were identified as medium-sized eggs, with oval barrel-shaped side walls. Their shells were thin with one pole rounded and the other pointed with a morula stage (16&#x2013;32 cells). In relation to larvae, they had a bullet-shaped head, with a medium-length tail sheath ending in a fine point (<xref ref-type="fig" rid="fig2">Figures 2B</xref>&#x2013;<xref ref-type="fig" rid="fig2">D</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption><p><bold>(A)</bold> A Haemonchus spp. egg containing the morula stage detected in the feces of sheep (400&#x00D7;). <bold>(B)</bold> <italic>Haemonchus contortus</italic> second-stage larva recovered from sheep fecal culture (100&#x00D7;). <bold>(C)</bold> The anterior region of a <italic>Haemonchus contortus</italic> second-stage larva showing a rounded head and rhabditiform esophagus (400&#x00D7;). <bold>(D)</bold> The posterior region of a <italic>Haemonchus</italic> contortus second-stage larva showing a pointed tail with a medium sheath (400&#x00D7;).</p></caption>
<graphic xlink:href="fvets-10-1327424-g002.tif"/>
</fig>
</sec>
<sec id="sec15">
<label>3.3</label>
<title>Molecular identification of <italic>Haemonchus</italic> spp.</title>
<p>A total of 240 morphologically distinguishable third-stage larvae were processed in four pools (60 larvae for each pool), which then underwent DNA extraction, amplification, and sequencing. BLASTn analysis revealed 100% homologies for all of them with <italic>H. contortus</italic> sequences (accession numbers, LS997564 or ON113484). Phylogenetic analysis of the PCR products confirmed the identification of <italic>H. contortus</italic>. In this respect, the obtained sequence revealed a strain located in the main clade that had two branches; the first subclade included the genus <italic>Ashworthius</italic>, with 99% bootstrap support. Although the genus <italic>Haemonchus</italic> occupied an independent subclade, the recovered strain (red circle) OP984151 <italic>H. contortus</italic> VMS5 showed 100% similarity with the established genes of <italic>Haemonchus</italic> (<xref ref-type="fig" rid="fig3">Figure 3</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption><p>Phylogenetic tree of the <italic>Haemonchus contortus</italic> strain (red circle) recovered from sheep fecal culture.</p></caption>
<graphic xlink:href="fvets-10-1327424-g003.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="sec16">
<label>4</label>
<title>Discussion</title>
<p>The current study has unveiled intriguing parasitological and molecular insights into <italic>Haemonchus</italic> infection among sheep in Upper Egypt, along with an exploration of the primary risk factors linked to this infection. Furthermore, the study conducted a national-level review of haemonchosis prevalence, with detection rates ranging from 7.00 to 49.00% (<xref ref-type="table" rid="tab1">Table 1</xref>). In the present study, the overall prevalence of <italic>Haemonchus</italic> infection was 33.00% (132 of 400), which was one of the highest values for Upper Egypt and, clinically, the positive animals displayed symptoms such as emaciation, anemia, reduced appetite, and diarrhea. Taken into account, very few molecular studies have been conducted at a national level and the majority of the previous studies were based on macroscopical methods for the identification of the parasite. At a national level, <italic>Haemonchus</italic> spp. were microscopically identified among 30.00% of the examined animals in a previous study in Egypt (<xref ref-type="bibr" rid="ref24">24</xref>), which is slightly lower than our present results. In other nearby countries, a previous study (<xref ref-type="bibr" rid="ref52">52</xref>) in Tunisia obtained a lower prevalence rate of 17.00%. Similar results (34.51%) were reported in a previous study in Iraq (<xref ref-type="bibr" rid="ref53">53</xref>). By contrast, a study in Sweden (<xref ref-type="bibr" rid="ref54">54</xref>) found a higher prevalence rate of 56.00% using microscopy and 72.00% through ddPCR. Another Swedish study (<xref ref-type="bibr" rid="ref55">55</xref>) identified <italic>H. contortus</italic> in 37.00% of the examined sheep. Furthermore (<xref ref-type="bibr" rid="ref56">56</xref>), a study in Rwanda recorded a prevalence rate of 83.40% for <italic>Haemonchus</italic> spp. These variations might be attributed to differences in climatic conditions, geographical locations, management practices, and the methodologies employed for pathogen detection (<xref ref-type="bibr" rid="ref14">14</xref>, <xref ref-type="bibr" rid="ref15">15</xref>).</p>
<p>In this study, age was recorded as a significant factor affecting <italic>Haemonchus</italic> infection in sheep. In this respect, animals less than 2&#x2009;years of age had a higher infection rate than that of older animals (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). These findings agree with previous studies (<xref ref-type="bibr" rid="ref53">53</xref>, <xref ref-type="bibr" rid="ref56">56</xref>, <xref ref-type="bibr" rid="ref57">57</xref>) in which the young animals were more vulnerable to infection than adults. The higher infection in young animals may be related to undeveloped active immunity at a younger age (<xref ref-type="bibr" rid="ref58">58</xref>). In relation to the sex of the inspected sheep, the study exhibited no significant deviation (<italic>p</italic>&#x2009;&#x003E;&#x2009;0.05) between the sex of the infected animals, with prevalence rates of 36.70 and 31.40% in male and female sheep, respectively. This slight percentage difference may be attributed to the fact that most females are kept indoors for breeding under careful and clean management, while most males are allowed to graze outdoors, potentially exposing them to a higher risk of infection. Similar findings were reported by Aga et al. (<xref ref-type="bibr" rid="ref57">57</xref>) in a previous study in Western Oromiya, Ethiopia. On the other hand, our results are not consistent with other previous studies (<xref ref-type="bibr" rid="ref24">24</xref>, <xref ref-type="bibr" rid="ref53">53</xref>) that found that females were more susceptible than males. Another previous study (<xref ref-type="bibr" rid="ref56">56</xref>) found a similar infection rate in male and female sheep. The seasonal variation was reported as another significant risk factor associated with <italic>Haemonchus</italic> infection in the examined sheep, with a rate of 58.90% (132 of 224) in cold or winter; no infections were identified in summer (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). The obtained results agree with a previous study (<xref ref-type="bibr" rid="ref55">55</xref>) that mentioned that the fecal egg counts of ewes decreases to insignificant levels in summer, and the infections tended to rise through autumn and were highest in lambs that persisted on the farms at the end of winter. Moreover, a previous study (<xref ref-type="bibr" rid="ref59">59</xref>) concluded that <italic>Haemonchus</italic> spp. have a distinctive feature, which refers to inhibited development (hypobiosis). Seasonal changes have been planned to be the main factor of hypobiosis. The feature is initiated when occasions for the spreading of the larvae are limited, which is a parasitic variation in cold weather. Additionally, hypobiosis can occur in high temperature conditions during the dry season (i.e., low humidity conditions). Furthermore, it was mentioned that, in Mediterranean climate regions, including Egypt, the outlines of <italic>Haemonchus</italic> spp. infection in small ruminants is frequently biphasic, with the highest rates occurring from early autumn to early winter and also from late spring to early summer (<xref ref-type="bibr" rid="ref59">59</xref>).</p>
<p>The diagnosis of gastrointestinal nematodes in sheep is commonly accomplished through stool analysis, with the identification of nematode species primarily relying on the morphology of eggs and larval stages found in feces. Importantly, many species of strongyle egg, such as <italic>Haemonchus</italic>, <italic>Trichostrongylus</italic>, <italic>Teladorsagia</italic>, <italic>Cooperia</italic>, and <italic>Bunostomum</italic>, are similar in size and shape (<xref ref-type="bibr" rid="ref60">60</xref>). Consequently, they cannot be easily distinguished at the genus level. Therefore, it is clear that combining fecal culture and the molecular investigation of the third-stage larva (L3) is essential for the specific identification of gastrointestinal nematodes in livestock (<xref ref-type="bibr" rid="ref61">61</xref>&#x2013;<xref ref-type="bibr" rid="ref63">63</xref>). The molecular detection of circulating species of parasites in a specific area is invaluable for understanding the disease&#x2019;s epidemiology and implementing effective control measures to combat the infection. It is worth noting that the most prevalent molecular markers include cytochrome c oxidase subunit I (cox1) of mitochondria, NADH dehydrogenase subunit, and the internal transcribed spacers (ITS1 and ITS2) of ribosomal DNA, which have consistently served as genetic markers for identifying the strongyle species in domestic animals (<xref ref-type="bibr" rid="ref62">62</xref>&#x2013;<xref ref-type="bibr" rid="ref66">66</xref>). In the present study, the phylogenetic analysis of PCR products from larval DNA revealed that the most prevalent nematode causing GIP problems in sheep flocks in Assiut was <italic>H. contortus</italic> (<xref ref-type="bibr" rid="ref61">61</xref>, <xref ref-type="bibr" rid="ref67">67</xref>, <xref ref-type="bibr" rid="ref68">68</xref>).</p>
</sec>
<sec sec-type="conclusions" id="sec17">
<label>5</label>
<title>Conclusion</title>
<p>This study addressed the prevalence of haemonchosis in sheep from Upper Egypt, identifying one of the highest levels recorded in the region. It was observed that some individual variable factors, such as age and the time of the year, appear to influence the risk of <italic>H. contortus</italic> infestation. Updated knowledge of these aspects can increase the efficiency of diagnostic and control methods, thereby reducing the associated risks of this disease. Our current study highlights the substantial advantages of combining morphological and molecular techniques for haemonchosis detection in sheep. This approach has facilitated the identification of the <italic>H. contortus</italic> species in the studied samples. This species demonstrates a high biotic potential, leading to rapidly increasing parasitic loads that impact health and limit productivity. In terms of the costs associated with control through chemical treatments, significant direct and indirect losses occur, contributing to a decline in sheep productivity, profitability, and sustainability. Considering these findings, we recommend that future studies delve into the extensive prevalence of nematode species on a broader scale in Egypt. This approach is crucial for the epidemiological study and management of <italic>Haemonchus</italic> spp.</p>
</sec>
<sec sec-type="data-availability" id="sec18">
<title>Data availability statement</title>
<p>The original contributions presented in the study are publicly available. This data can be found at: <ext-link xlink:href="https://www.ncbi.nlm.nih.gov/nuccore/" ext-link-type="uri">https://www.ncbi.nlm.nih.gov/nuccore/</ext-link>; OP984151.</p>
</sec>
<sec sec-type="ethics-statement" id="sec19">
<title>Ethics statement</title>
<p>The animal studies were approved by research ethical committee of the Faculty of Veterinary Medicine, Assiut University (Approval number 06/2023/0096). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent was obtained from the owners for the participation of their animals in this study.</p>
</sec>
<sec sec-type="author-contributions" id="sec20">
<title>Author contributions</title>
<p>SM: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Supervision, Validation, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. AD: Conceptualization, Formal analysis, Investigation, Project administration, Software, Supervision, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. ER-&#x00C1;: Data curation, Formal analysis, Funding acquisition, Methodology, Validation, Visualization, Writing &#x2013; review &#x0026; editing. FA-A: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. FO: Conceptualization, Methodology, Software, Supervision, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. AG: Data curation, Formal analysis, Investigation, Resources, Supervision, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. AF: Data curation, Funding acquisition, Validation, Writing &#x2013; original draft. DS: Data curation, Software, Validation, Writing &#x2013; original draft. ME-K: Funding acquisition, Resources, Software, Validation, Writing &#x2013; original draft. DB-B: Software, Validation, Writing &#x2013; original draft. AA: Investigation, Writing &#x2013; original draft. EE: Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Resources, Software, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec21">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This study was supported by the Princess Nourah bint Abdulrahman University Researchers Supporting Project (PNURSP2023R23), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.</p>
</sec>
<sec sec-type="COI-statement" id="sec22">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="sec23">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fvets.2023.1327424/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fvets.2023.1327424/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.ZIP" id="SM1" mimetype="application/zip" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<fn-group>
<fn id="fn0001"><p><sup>1</sup><ext-link xlink:href="https://blast.ncbi.nlm.nih.gov/Blast.cgi" ext-link-type="uri">https://blast.ncbi.nlm.nih.gov/Blast.cgi</ext-link></p></fn>
</fn-group>
<ref-list>
<title>References</title>
<ref id="ref1"><label>1.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ahmad</surname> <given-names>M</given-names></name> <name><surname>Khan</surname> <given-names>MN</given-names></name> <name><surname>Sajid</surname> <given-names>MS</given-names></name> <name><surname>Muhammad</surname> <given-names>G</given-names></name> <name><surname>Qudoos</surname> <given-names>A</given-names></name> <name><surname>Rizwan</surname> <given-names>HM</given-names></name></person-group>. <article-title>Prevalence, economic analysis and chemotherapeutic control of small ruminant Fasciolosis in the Sargodha District of Punjab</article-title>. <source>Pakistan Vet Ital</source>. (<year>2017</year>) <volume>53</volume>:<fpage>47</fpage>&#x2013;<lpage>53</lpage>. doi: <pub-id pub-id-type="doi">10.12834/VetIt.114.316.6</pub-id>, PMID: <pub-id pub-id-type="pmid">28365925</pub-id></citation></ref>
<ref id="ref2"><label>2.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rafiullah</surname> <given-names>T</given-names></name> <name><surname>Sajid</surname> <given-names>A</given-names></name> <name><surname>Shah</surname> <given-names>SR</given-names></name> <name><surname>Ahmad</surname> <given-names>S</given-names></name> <name><surname>Shahid</surname> <given-names>M</given-names></name></person-group>. <article-title>Prevalence of gastrointestinal tract parasites in cattle of Khyber Pakhtunkhwa</article-title>. <source>ARPN J Agr Biol Sci</source>. (<year>2011</year>) <volume>6</volume>:<fpage>9</fpage>&#x2013;<lpage>15</lpage>.</citation></ref>
<ref id="ref3"><label>3.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abdelazeem</surname> <given-names>AG</given-names></name> <name><surname>Dyab</surname> <given-names>AK</given-names></name> <name><surname>Mohamed</surname> <given-names>YM</given-names></name></person-group>. <article-title>Helminthic infection in digestive system of goats in slaughterhouse, Manfalout, Assiut governorate</article-title>. <source>Egypt J Egypt Soc Parasitol</source>. (<year>2020</year>) <volume>50</volume>:<fpage>649</fpage>&#x2013;<lpage>55</lpage>. doi: <pub-id pub-id-type="doi">10.21608/jesp.2020.131101</pub-id></citation></ref>
<ref id="ref4"><label>4.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baihaqi</surname> <given-names>ZA</given-names></name> <name><surname>Widiyono</surname> <given-names>I</given-names></name> <name><surname>Nurcahyo</surname> <given-names>W</given-names></name></person-group>. <article-title>Prevalence of gastrointestinal Worms in Wonosobo and thin-tailed sheep on the slope of mount Sumbing, Central Java, Indonesia</article-title>. <source>Vet World</source>. (<year>2019</year>) <volume>12</volume>:<fpage>1866</fpage>&#x2013;<lpage>71</lpage>. doi: <pub-id pub-id-type="doi">10.14202/vetworld.2019.1866-1871</pub-id>, PMID: <pub-id pub-id-type="pmid">32009768</pub-id></citation></ref>
<ref id="ref5"><label>5.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garedaghi</surname> <given-names>Y</given-names></name> <name><surname>Rezaii Saber</surname> <given-names>AP</given-names></name> <name><surname>Naghizadeh</surname> <given-names>A</given-names></name> <name><surname>Nazeri</surname> <given-names>M</given-names></name></person-group>. <article-title>Survey on prevalence of sheep and goats lungworms in Tabriz abattoir</article-title>. <source>Iran Adv Environ Biol</source>. (<year>2011</year>) <volume>5</volume>:<fpage>773</fpage>&#x2013;<lpage>6</lpage>.</citation></ref>
<ref id="ref6"><label>6.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Osman</surname> <given-names>F</given-names></name> <name><surname>Gaadee</surname> <given-names>H</given-names></name> <name><surname>Sanosi</surname> <given-names>N</given-names></name></person-group>. <article-title>Some studies on Haemonchiosis in sheep and goats in New Valley governorate Egypt</article-title>. <source>J Agric Res</source>. (<year>2018</year>) <volume>4</volume>:<fpage>32</fpage>&#x2013;<lpage>45</lpage>.</citation></ref>
<ref id="ref7"><label>7.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Santos</surname> <given-names>MC</given-names></name> <name><surname>Silva</surname> <given-names>BF</given-names></name> <name><surname>Amarante</surname> <given-names>AF</given-names></name></person-group>. <article-title>Environmental factors influencing the transmission of <italic>Haemonchus contortus</italic></article-title>. <source>Vet Parasitol</source>. (<year>2012</year>) <volume>188</volume>:<fpage>277</fpage>&#x2013;<lpage>84</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2012.03.056</pub-id>, PMID: <pub-id pub-id-type="pmid">22521972</pub-id></citation></ref>
<ref id="ref8"><label>8.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gareh</surname> <given-names>A</given-names></name> <name><surname>Elhawary</surname> <given-names>NM</given-names></name> <name><surname>Tahoun</surname> <given-names>A</given-names></name> <name><surname>Ramez</surname> <given-names>AM</given-names></name> <name><surname>El-Shewehy</surname> <given-names>DM</given-names></name> <name><surname>Elbaz</surname> <given-names>E</given-names></name> <etal/></person-group>. <article-title>Epidemiological, morphological, and morphometric study on <italic>Haemonchus</italic> spp</article-title>. <source>Recovered from Goats in Egypt Front vet sci</source>. (<year>2021</year>) <volume>8</volume>:<fpage>705619</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fvets.2021.705619</pub-id>, PMID: <pub-id pub-id-type="pmid">34765663</pub-id></citation></ref>
<ref id="ref9"><label>9.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hassan</surname> <given-names>D</given-names></name> <name><surname>Musa-Azara</surname> <given-names>I</given-names></name> <name><surname>Mohammed</surname> <given-names>J</given-names></name> <name><surname>Zanwa</surname> <given-names>I</given-names></name></person-group>. <article-title>Influence of age, sex and season on Haematology and serum chemistry of red Sokoto goats in Lafia, Nasarawa state Nigeria</article-title>. <source>Int J Agric Vet Sci</source>. (<year>2013</year>) <volume>1</volume>:<fpage>57</fpage>&#x2013;<lpage>63</lpage>.</citation></ref>
<ref id="ref10"><label>10.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mortensen</surname> <given-names>LL</given-names></name> <name><surname>Williamson</surname> <given-names>LH</given-names></name> <name><surname>Terrill</surname> <given-names>TH</given-names></name> <name><surname>Kircher</surname> <given-names>RA</given-names></name> <name><surname>Larsen</surname> <given-names>M</given-names></name> <name><surname>Kaplan</surname> <given-names>RM</given-names></name></person-group>. <article-title>Evaluation of prevalence and clinical implications of anthelmintic resistance in gastrointestinal nematodes in goats</article-title>. <source>J Am Vet Med Assoc</source>. (<year>2003</year>) <volume>223</volume>:<fpage>495</fpage>&#x2013;<lpage>500</lpage>. doi: <pub-id pub-id-type="doi">10.2460/javma.2003.223.495</pub-id>, PMID: <pub-id pub-id-type="pmid">12930089</pub-id></citation></ref>
<ref id="ref11"><label>11.</label><citation citation-type="book"><person-group person-group-type="author"><name><surname>Sutherland</surname> <given-names>I</given-names></name></person-group>. <article-title>Nematode Parasites</article-title> In: <source>Gastrointestinal nematodes of sheep and goats</source>. <publisher-loc>Chichester</publisher-loc>: <publisher-name>Wiley-Blackwell</publisher-name> (<year>2010</year>). <fpage>1</fpage>&#x2013;<lpage>31</lpage>.</citation></ref>
<ref id="ref12"><label>12.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Githigia</surname> <given-names>S</given-names></name> <name><surname>Thamsborg</surname> <given-names>S</given-names></name> <name><surname>Munyua</surname> <given-names>W</given-names></name> <name><surname>Maingi</surname> <given-names>N</given-names></name></person-group>. <article-title>Impact of gastrointestinal helminths on production in goats in Kenya</article-title>. <source>Small Rumin Res</source>. (<year>2001</year>) <volume>42</volume>:<fpage>21</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0921-4488(01)00240-1</pub-id></citation></ref>
<ref id="ref13"><label>13.</label><citation citation-type="book"><person-group person-group-type="author"><name><surname>Bowman</surname> <given-names>D</given-names></name></person-group>. <source>Text book of Georgis&#x2019; parasitology for veterinarians</source>. <edition>10th</edition> ed. <publisher-loc>St Louis MO</publisher-loc>: <publisher-name>Elsevier</publisher-name> (<year>2014</year>).</citation></ref>
<ref id="ref14"><label>14.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mkandawire</surname> <given-names>TT</given-names></name> <name><surname>Grencis</surname> <given-names>RK</given-names></name> <name><surname>Berriman</surname> <given-names>M</given-names></name> <name><surname>Duque-Correa</surname> <given-names>MA</given-names></name></person-group>. <article-title>Hatching of parasitic nematode eggs: A crucial step determining infection</article-title>. <source>Trends Parasitol</source>. (<year>2022</year>) <volume>38</volume>:<fpage>174</fpage>&#x2013;<lpage>87</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pt.2021.08.008</pub-id>, PMID: <pub-id pub-id-type="pmid">34538735</pub-id></citation></ref>
<ref id="ref15"><label>15.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Knapp-Lawitzke</surname> <given-names>F</given-names></name> <name><surname>von Samson-Himmelstjerna</surname> <given-names>G</given-names></name> <name><surname>Demeler</surname> <given-names>J</given-names></name></person-group>. <article-title>Elevated temperatures and long drought periods have a negative impact on survival and fitness of Strongylid third stage larvae</article-title>. <source>Int J Parasitol</source>. (<year>2016</year>) <volume>46</volume>:<fpage>229</fpage>&#x2013;<lpage>37</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijpara.2015.10.006</pub-id>, PMID: <pub-id pub-id-type="pmid">26828893</pub-id></citation></ref>
<ref id="ref16"><label>16.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Besier</surname> <given-names>R</given-names></name> <name><surname>Kahn</surname> <given-names>L</given-names></name> <name><surname>Sargison</surname> <given-names>N</given-names></name> <name><surname>Van Wyk</surname> <given-names>JA</given-names></name></person-group>. <article-title>The pathophysiology, ecology and epidemiology of <italic>Haemonchus contortus</italic> infection in small ruminants</article-title>. <source>Adv Parasitol</source>. (<year>2016</year>) <volume>93</volume>:<fpage>95</fpage>&#x2013;<lpage>143</lpage>. doi: <pub-id pub-id-type="doi">10.1016/bs.apar.2016.02.022</pub-id>, PMID: <pub-id pub-id-type="pmid">27238004</pub-id></citation></ref>
<ref id="ref17"><label>17.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>O&#x2019;Connor</surname> <given-names>LJ</given-names></name> <name><surname>Walkden-Brown</surname> <given-names>SW</given-names></name> <name><surname>Kahn</surname> <given-names>LP</given-names></name></person-group>. <article-title>Ecology of the free-living stages of major Trichostrongylid parasites of sheep</article-title>. <source>Vet Parasitol</source>. (<year>2006</year>) <volume>142</volume>:<fpage>1</fpage>&#x2013;<lpage>15</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2006.08.035</pub-id>, PMID: <pub-id pub-id-type="pmid">17011129</pub-id></citation></ref>
<ref id="ref18"><label>18.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dryden</surname> <given-names>MW</given-names></name> <name><surname>Payne</surname> <given-names>PA</given-names></name> <name><surname>Ridley</surname> <given-names>R</given-names></name> <name><surname>Smith</surname> <given-names>V</given-names></name></person-group>. <article-title>Comparison of common fecal flotation techniques for the recovery of parasite eggs and oocysts</article-title>. <source>Vet Ther</source>. (<year>2005</year>) <volume>6</volume>:<fpage>15</fpage>&#x2013;<lpage>28</lpage>. PMID: <pub-id pub-id-type="pmid">15906267</pub-id></citation></ref>
<ref id="ref19"><label>19.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kandil</surname> <given-names>OM</given-names></name> <name><surname>Abdelrahman</surname> <given-names>KA</given-names></name> <name><surname>Eid</surname> <given-names>NA</given-names></name> <name><surname>Elakabawy</surname> <given-names>LM</given-names></name> <name><surname>Helal</surname> <given-names>MA</given-names></name></person-group>. <article-title>Epidemiological study of genetic diversity and patterns of gene flow in <italic>Haemonchus</italic> species affecting domestic ruminants in Egypt</article-title>. <source>Bull Natl Res Cent</source>. (<year>2018</year>) <volume>42</volume>:<fpage>1</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.1186/s42269-018-0026-1</pub-id></citation></ref>
<ref id="ref20"><label>20.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>El-Dakhly</surname> <given-names>KM</given-names></name> <name><surname>El Askalany</surname> <given-names>MA</given-names></name> <name><surname>Yanai</surname> <given-names>T</given-names></name></person-group>. <article-title>An abattoir-based study on helminths of slaughtered sheep in Beni-Suef, Egypt. Beni-Suef Univ</article-title>. <source>J Appl Sci</source>. (<year>2012</year>) <volume>1</volume>:<fpage>49</fpage>&#x2013;<lpage>60</lpage>.</citation></ref>
<ref id="ref21"><label>21.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sultan</surname> <given-names>K</given-names></name> <name><surname>Desoukey</surname> <given-names>A</given-names></name> <name><surname>Elsiefy</surname> <given-names>M</given-names></name> <name><surname>Elbahy</surname> <given-names>N</given-names></name></person-group>. <article-title>An abattoir study on the prevalence of some gastrointestinal helminths of sheep in Gharbia governorate</article-title>. <source>Egypt Glob Vet</source>. (<year>2010</year>) <volume>5</volume>:<fpage>84</fpage>&#x2013;<lpage>7</lpage>.</citation></ref>
<ref id="ref22"><label>22.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hashem</surname> <given-names>M</given-names></name></person-group>. <article-title>Helminth parasites of sheep in Dakahlia Province-Egypt</article-title>. <source>Assiut Vet Med J</source>. (<year>1997</year>) <volume>38.1</volume>:<fpage>48</fpage>&#x2013;<lpage>54</lpage>. doi: <pub-id pub-id-type="doi">10.21608/avmj.1997.183629</pub-id></citation></ref>
<ref id="ref23"><label>23.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ibraheim</surname> <given-names>Z</given-names></name> <name><surname>Ahmed</surname> <given-names>M</given-names></name></person-group>. <article-title>Prevalence of <italic>Haemonchus</italic> Worms in sheep at Assiut governorate, and preliminary evaluation of the Anthelmentic activity of Ferula Hermonis extracts against their different stages</article-title>. <source>Assiut Vet Med J</source>. (<year>2008</year>) <volume>54</volume>:<fpage>1</fpage>&#x2013;<lpage>14</lpage>.</citation></ref>
<ref id="ref24"><label>24.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Al-Gaabary</surname> <given-names>M</given-names></name> <name><surname>Osman</surname> <given-names>S</given-names></name> <name><surname>Abo El-Soud</surname> <given-names>K</given-names></name> <name><surname>Hassan</surname> <given-names>A</given-names></name></person-group>. <article-title>Studies on gastrointestinal nematodes infection in sheep with special reference to <italic>Haemonchus contortus</italic></article-title>. <source>Assiut Vet Med J</source>. (<year>2012</year>) <volume>58</volume>:<fpage>31</fpage>&#x2013;<lpage>40</lpage>. doi: <pub-id pub-id-type="doi">10.21608/avmj.2012.166726</pub-id></citation></ref>
<ref id="ref25"><label>25.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fathy Noaman</surname> <given-names>A</given-names></name> <name><surname>Arafa</surname> <given-names>W</given-names></name> <name><surname>Shokier</surname> <given-names>KA</given-names></name> <name><surname>Aboelhadid</surname> <given-names>SM</given-names></name></person-group>. <article-title>Prevalence of gastrointestinal nematodes and its susceptibility for different Anthelmintics in grazing sheep in Beni-Suef Province</article-title>. <source>Egypt Assiut Vet Med J</source>. (<year>2016</year>) <volume>62</volume>:<fpage>58</fpage>&#x2013;<lpage>66</lpage>. doi: <pub-id pub-id-type="doi">10.21608/avmj.2016.169990</pub-id></citation></ref>
<ref id="ref26"><label>26.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mohamdy</surname> <given-names>M</given-names></name></person-group>. <article-title>Prevalence of gastrointestinal helminthes infesting sheep in Kalubia governorate</article-title>. <source>Egypt BVMJ</source>. (<year>2023</year>) <volume>44</volume>:<fpage>19</fpage>&#x2013;<lpage>23</lpage>.</citation></ref>
<ref id="ref27"><label>27.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mahran</surname> <given-names>O</given-names></name></person-group>. <article-title>Prevalence and significance of gastrointestinal parasites in desert sheep in the triangular area (Shalatin&#x2013;Abu-Ramaid-Halaeeb) Red Sea governorate, Egypt and trials of treatment</article-title>. <source>Assiut Vet Med J</source>. (<year>2009</year>) <volume>55</volume>:<fpage>1</fpage>&#x2013;<lpage>23</lpage>.</citation></ref>
<ref id="ref28"><label>28.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kandil</surname> <given-names>OM</given-names></name> <name><surname>Eid</surname> <given-names>NA</given-names></name> <name><surname>Elakabawy</surname> <given-names>LM</given-names></name> <name><surname>Abdelrahman</surname> <given-names>KA</given-names></name> <name><surname>Helal</surname> <given-names>MA</given-names></name></person-group>. <article-title>Immunodiagnostic potency of different <italic>Haemonchus contortus</italic> antigens for diagnosis of experimentally and naturally Haemonchosis in Egyptian sheep</article-title>. <source>APG</source>. (<year>2015</year>) <volume>6</volume>:<fpage>238</fpage>&#x2013;<lpage>47</lpage>.</citation></ref>
<ref id="ref29"><label>29.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Alam</surname> <given-names>RT</given-names></name> <name><surname>Hassanen</surname> <given-names>EA</given-names></name> <name><surname>El-Mandrawy</surname> <given-names>SA</given-names></name></person-group>. <article-title><italic>Heamonchus contortus</italic> infection in sheep and goats: alterations in Haematological, biochemical, immunological, trace element and oxidative stress markers</article-title>. <source>J Appl Anim Res</source>. (<year>2020</year>) <volume>48</volume>:<fpage>357</fpage>&#x2013;<lpage>64</lpage>. doi: <pub-id pub-id-type="doi">10.1080/09712119.2020.1802281</pub-id></citation></ref>
<ref id="ref30"><label>30.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Auda</surname> <given-names>HM</given-names></name> <name><surname>Khalifa</surname> <given-names>MM</given-names></name> <name><surname>Amin</surname> <given-names>MM</given-names></name> <name><surname>El Bahy</surname> <given-names>MM</given-names></name></person-group>. <article-title>Value of pooled gastro-intestinal nematode Coproantigens in the diagnosis of inhibited larvae infection in Egyptian sheep</article-title>. <source>J Egypt Soc Parasitol</source>. (<year>2020</year>) <volume>50</volume>:<fpage>98</fpage>&#x2013;<lpage>104</lpage>. doi: <pub-id pub-id-type="doi">10.21608/jesp.2020.88760</pub-id></citation></ref>
<ref id="ref31"><label>31.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abo El Hadid</surname> <given-names>S</given-names></name> <name><surname>Lotfy</surname> <given-names>H</given-names></name></person-group>. <article-title>Some studies on enteric parasites of sheep in Beni-Suef governorate</article-title>. <source>J Vet Med Sci</source>. (<year>2007</year>) <volume>17</volume>:<fpage>11</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.21608/jvmr.2007.77887</pub-id></citation></ref>
<ref id="ref32"><label>32.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Al-Aboody</surname> <given-names>MS</given-names></name> <name><surname>Omar</surname> <given-names>MA</given-names></name></person-group>. <article-title>Prevalence of gastrointestinal nematodes of farm animals by Copro-culture. Russ</article-title>. <source>J Mar Biol</source>. (<year>2016</year>) <volume>3</volume>:<fpage>168</fpage>&#x2013;<lpage>74</lpage>. doi: <pub-id pub-id-type="doi">10.12737/20059</pub-id></citation></ref>
<ref id="ref33"><label>33.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Khalafalla</surname> <given-names>RE</given-names></name> <name><surname>Elseify</surname> <given-names>MA</given-names></name> <name><surname>Elbahy</surname> <given-names>NM</given-names></name></person-group>. <article-title>Seasonal prevalence of gastrointestinal nematode parasites of sheep in northern region of Nile Delta</article-title>. <source>Egypt Parasitol Res</source>. (<year>2011</year>) <volume>108</volume>:<fpage>337</fpage>&#x2013;<lpage>40</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s00436-010-2066-9</pub-id>, PMID: <pub-id pub-id-type="pmid">20922430</pub-id></citation></ref>
<ref id="ref34"><label>34.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Saleh</surname> <given-names>S</given-names></name> <name><surname>Abbas</surname> <given-names>I</given-names></name> <name><surname>Al-Araby</surname> <given-names>M</given-names></name> <name><surname>Hildreth</surname> <given-names>M</given-names></name> <name><surname>Abu-Elwafa</surname> <given-names>S</given-names></name></person-group>. <article-title>Combined molecular and lectin binding assays to identify different Trichostrongyle eggs in feces of sheep and goats from Egypt</article-title>. <source>Acta Parasitol</source>. (<year>2021</year>) <volume>66</volume>:<fpage>384</fpage>&#x2013;<lpage>96</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11686-020-00287-y</pub-id></citation></ref>
<ref id="ref35"><label>35.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hassan</surname> <given-names>NM</given-names></name> <name><surname>Aboelsoued</surname> <given-names>D</given-names></name> <name><surname>Farag</surname> <given-names>TK</given-names></name> <name><surname>Hassan</surname> <given-names>SE</given-names></name> <name><surname>Abu El Ezz</surname> <given-names>NM</given-names></name></person-group>. <article-title>Assessment of <italic>Haemonchus contortus</italic> larval and adult somatic antigens in Sero-diagnosis of Haemonchosis in naturally infected sheep and goats</article-title>. <source>J Parasit Dis</source>. (<year>2019</year>) <volume>43</volume>:<fpage>718</fpage>&#x2013;<lpage>25</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s12639-019-01152-0</pub-id>, PMID: <pub-id pub-id-type="pmid">31749544</pub-id></citation></ref>
<ref id="ref36"><label>36.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>El Khabaz</surname> <given-names>KAS</given-names></name> <name><surname>Mohsen</surname> <given-names>IA</given-names></name></person-group>. <article-title>Study of the Prevelance of Interinal parasitic infection in Diariec and apparently healthy sheep at Assiut governorate Egypt. Zag</article-title>. <source>Vet J</source>. (<year>2014</year>) <volume>42</volume>:<fpage>157</fpage>&#x2013;<lpage>68</lpage>. doi: <pub-id pub-id-type="doi">10.21608/zvjz.2014.60062</pub-id></citation></ref>
<ref id="ref37"><label>37.</label><citation citation-type="other"><person-group person-group-type="author"><name><surname>Kaufmann</surname> <given-names>J.</given-names></name></person-group> <source>Parasitic infections of domestic animals: A diagnostic manual: ILRI (aka ILCA and ILRAD)</source>. Birkh&#x00E4;user Basel (<year>1996</year>).</citation></ref>
<ref id="ref38"><label>38.</label><citation citation-type="book"><person-group person-group-type="author"><name><surname>Urquhart</surname> <given-names>GM</given-names></name> <name><surname>Armour</surname> <given-names>J</given-names></name> <name><surname>Duncan</surname> <given-names>JL</given-names></name> <name><surname>Dunn</surname> <given-names>AM</given-names></name> <name><surname>Jennings</surname> <given-names>FW</given-names></name></person-group>. <source>Veterinary parasitology (2nded)</source>, <publisher-name>Black Well Science. The University of Glaskow</publisher-name>, <publisher-loc>Scotland, Uk</publisher-loc>, <fpage>181</fpage>&#x2013;<lpage>188</lpage>. (<year>1996</year>).</citation></ref>
<ref id="ref39"><label>39.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Balakrishna</surname> <given-names>J</given-names></name> <name><surname>Venkateswarlu</surname> <given-names>S</given-names></name> <name><surname>Bai</surname> <given-names>K</given-names></name> <name><surname>Saheb</surname> <given-names>HS</given-names></name></person-group>. <article-title>Comparison of modified 1% potassium hydroxide Formol-ether concentration technique with direct wet mount preparation and standard Formol-ether concentration technique for detection of parasites in stool</article-title>. <source>J Pharm Sci Res</source>. (<year>2013</year>) <volume>5</volume>:<fpage>147</fpage>.</citation></ref>
<ref id="ref40"><label>40.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zajac</surname> <given-names>AM</given-names></name></person-group>. <article-title>Garza, and J. Biology, epidemiology, and control of gastrointestinal nematodes of small ruminants</article-title>. <source>Vet Clin N Am - Food Anim</source>. (<year>2020</year>) <volume>36</volume>:<fpage>73</fpage>&#x2013;<lpage>87</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.cvfa.2019.12.005</pub-id>, PMID: <pub-id pub-id-type="pmid">32029190</pub-id></citation></ref>
<ref id="ref41"><label>41.</label><citation citation-type="other"><person-group person-group-type="author"><name><surname>Soulsby</surname> <given-names>E. J.</given-names></name></person-group> Helminthes, Arthropods, and protozoa of domestic animals. 7th edition clows ltd. Beacles and London. (<year>1982</year>) <fpage>523</fpage>&#x2013;<lpage>530</lpage>.</citation></ref>
<ref id="ref42"><label>42.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Floyd</surname> <given-names>RM</given-names></name> <name><surname>Rogers</surname> <given-names>AD</given-names></name> <name><surname>Lambshead</surname> <given-names>PJD</given-names></name> <name><surname>Smith</surname> <given-names>CR</given-names></name></person-group>. <article-title>Nematode-specific Pcr primers for the 18s small subunit Rrna gene</article-title>. <source>Mol Ecol Notes</source>. (<year>2005</year>) <volume>5</volume>:<fpage>611</fpage>&#x2013;<lpage>2</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1471-8286.2005.01009.x</pub-id></citation></ref>
<ref id="ref43"><label>43.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Altschul</surname> <given-names>SF</given-names></name> <name><surname>Gish</surname> <given-names>W</given-names></name> <name><surname>Miller</surname> <given-names>W</given-names></name> <name><surname>Myers</surname> <given-names>EW</given-names></name> <name><surname>Lipman</surname> <given-names>DJ</given-names></name></person-group>. <article-title>Basic local alignment search tool</article-title>. <source>J Mol Biol</source>. (<year>1990</year>) <volume>215</volume>:<fpage>403</fpage>&#x2013;<lpage>10</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0022-2836(05)80360-2</pub-id></citation></ref>
<ref id="ref44"><label>44.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Katoh</surname> <given-names>K</given-names></name> <name><surname>Rozewicki</surname> <given-names>J</given-names></name> <name><surname>Yamada</surname> <given-names>KD</given-names></name></person-group>. <article-title>Mafft online service: multiple sequence alignment, interactive sequence choice and visualization</article-title>. <source>Brief Bioinform</source>. (<year>2019</year>) <volume>20</volume>:<fpage>1160</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.1093/bib/bbx108</pub-id></citation></ref>
<ref id="ref45"><label>45.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Darriba</surname> <given-names>D</given-names></name> <name><surname>Taboada</surname> <given-names>GL</given-names></name> <name><surname>Doallo</surname> <given-names>R</given-names></name> <name><surname>Posada</surname> <given-names>D</given-names></name></person-group>. <article-title>Jmodeltest 2: more models, new heuristics and parallel computing</article-title>. <source>Nat Methods</source>. (<year>2012</year>) <volume>9</volume>:<fpage>772</fpage>. doi: <pub-id pub-id-type="doi">10.1038/nmeth.2109</pub-id></citation></ref>
<ref id="ref46"><label>46.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tamura</surname> <given-names>K</given-names></name> <name><surname>Stecher</surname> <given-names>G</given-names></name> <name><surname>Kumar</surname> <given-names>S</given-names></name></person-group>. <article-title>Mega11: molecular evolutionary genetics analysis version 11</article-title>. <source>Mol Biol Evol</source>. (<year>2021</year>) <volume>38</volume>:<fpage>3022</fpage>&#x2013;<lpage>7</lpage>. doi: <pub-id pub-id-type="doi">10.1093/molbev/msab120</pub-id>, PMID: <pub-id pub-id-type="pmid">33892491</pub-id></citation></ref>
<ref id="ref47"><label>47.</label><citation citation-type="book"><person-group person-group-type="author"><name><surname>Nei</surname> <given-names>M</given-names></name> <name><surname>Kumar</surname> <given-names>S</given-names></name></person-group>. <source>Molecular evolution and Phylogenetics</source>. <publisher-loc>New York</publisher-loc>: <publisher-name>Oxford university press</publisher-name> (<year>2000</year>).</citation></ref>
<ref id="ref48"><label>48.</label><citation citation-type="web"><person-group person-group-type="author"><name><surname>Rambaut</surname> <given-names>A.</given-names></name></person-group> Figtree V1.4.4. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. (<year>2018</year>). <comment>Available at:</comment> <ext-link xlink:href="http://treebioedacuk/software/figtree/" ext-link-type="uri">http://treebioedacuk/software/figtree/</ext-link>.</citation></ref>
<ref id="ref49"><label>49.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Thompson</surname> <given-names>JD</given-names></name> <name><surname>Higgins</surname> <given-names>DG</given-names></name> <name><surname>Gibson</surname> <given-names>TJ</given-names></name></person-group>. <article-title>Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice</article-title>. <source>Nucleic Acids Res</source>. (<year>1994</year>) <volume>22</volume>:<fpage>4673</fpage>&#x2013;<lpage>80</lpage>. doi: <pub-id pub-id-type="doi">10.1093/nar/22.22.4673</pub-id>, PMID: <pub-id pub-id-type="pmid">7984417</pub-id></citation></ref>
<ref id="ref50"><label>50.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tamura</surname> <given-names>K</given-names></name> <name><surname>Stecher</surname> <given-names>G</given-names></name> <name><surname>Peterson</surname> <given-names>D</given-names></name> <name><surname>Filipski</surname> <given-names>A</given-names></name> <name><surname>Kumar</surname> <given-names>S</given-names></name></person-group>. <article-title>Mega6: molecular evolutionary genetics analysis version 6.0</article-title>. <source>Mol Biol Evol</source>. (<year>2013</year>) <volume>30</volume>:<fpage>2725</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1093/molbev/mst197</pub-id>, PMID: <pub-id pub-id-type="pmid">24132122</pub-id></citation></ref>
<ref id="ref51"><label>51.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wilson</surname> <given-names>EB</given-names></name></person-group>. <article-title>Probable inference, the law of succession, and statistical inference</article-title>. <source>J Am Stat Assoc</source>. (<year>1927</year>) <volume>22</volume>:<fpage>209</fpage>&#x2013;<lpage>12</lpage>. doi: <pub-id pub-id-type="doi">10.1080/01621459.1927.10502953</pub-id></citation></ref>
<ref id="ref52"><label>52.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Akkari</surname> <given-names>H</given-names></name> <name><surname>Jebali</surname> <given-names>J</given-names></name> <name><surname>Gharbi</surname> <given-names>M</given-names></name> <name><surname>Mhadhbi</surname> <given-names>M</given-names></name> <name><surname>Awadi</surname> <given-names>S</given-names></name> <name><surname>Darghouth</surname> <given-names>MA</given-names></name></person-group>. <article-title>Epidemiological study of sympatric <italic>Haemonchus</italic> species and genetic characterization of <italic>Haemonchus contortus</italic> in domestic ruminants in Tunisia</article-title>. <source>Vet Parasitol</source>. (<year>2013</year>) <volume>193</volume>:<fpage>118</fpage>&#x2013;<lpage>25</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2012.12.014</pub-id>, PMID: <pub-id pub-id-type="pmid">23333137</pub-id></citation></ref>
<ref id="ref53"><label>53.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Al-Hasnawy</surname> <given-names>MHM</given-names></name></person-group>. <article-title>Prevalence and pathogenicity of Haemonchosis in sheep and goats in Hilla City/Iraq</article-title>. <source>J Babylon Univ/Pure and Appl Sci</source>. (<year>2014</year>) <volume>7</volume>:<fpage>12</fpage>&#x2013;<lpage>20</lpage>.</citation></ref>
<ref id="ref54"><label>54.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>H&#x00F6;glund</surname> <given-names>J</given-names></name> <name><surname>Elmahalawy</surname> <given-names>ST</given-names></name> <name><surname>Halvarsson</surname> <given-names>P</given-names></name> <name><surname>Gustafsson</surname> <given-names>K</given-names></name></person-group>. <article-title>Detection of <italic>Haemonchus contortus</italic> on sheep farms increases using an enhanced sampling protocol combined with Pcr based diagnostics</article-title>. <source>Vet Parasitol</source>. (<year>2019</year>) <volume>276</volume>:<fpage>100018</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vpoa.2019.100018</pub-id>, PMID: <pub-id pub-id-type="pmid">32904718</pub-id></citation></ref>
<ref id="ref55"><label>55.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lindqvist</surname> <given-names>&#x00C5;</given-names></name> <name><surname>Ljungstr&#x00F6;m</surname> <given-names>B</given-names></name> <name><surname>Nilsson</surname> <given-names>O</given-names></name> <name><surname>Waller</surname> <given-names>P</given-names></name></person-group>. <article-title>The dynamics, prevalence and impact of nematode infections in organically raised sheep in Sweden</article-title>. <source>Acta Vet Scand</source>. (<year>2001</year>) <volume>42</volume>:<fpage>377</fpage>&#x2013;<lpage>89</lpage>. doi: <pub-id pub-id-type="doi">10.1186/1751-0147-42-377</pub-id>, PMID: <pub-id pub-id-type="pmid">11887398</pub-id></citation></ref>
<ref id="ref56"><label>56.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mushonga</surname> <given-names>B</given-names></name> <name><surname>Habumugisha</surname> <given-names>D</given-names></name> <name><surname>Kandiwa</surname> <given-names>E</given-names></name> <name><surname>Madzingira</surname> <given-names>O</given-names></name> <name><surname>Samkange</surname> <given-names>A</given-names></name> <name><surname>Segwagwe</surname> <given-names>BE</given-names></name> <etal/></person-group>. <article-title>Prevalence of <italic>Haemonchus contortus</italic> infections in sheep and goats in Nyagatare District, Rwanda</article-title>. <source>J Vet Med A</source>. (<year>2018</year>) <volume>2018</volume>:<fpage>1</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1155/2018/3602081</pub-id>, PMID: <pub-id pub-id-type="pmid">30271791</pub-id></citation></ref>
<ref id="ref57"><label>57.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aga</surname> <given-names>TS</given-names></name> <name><surname>Tolossa</surname> <given-names>YH</given-names></name> <name><surname>Terefe</surname> <given-names>G</given-names></name></person-group>. <article-title>Epidemiology of gastrointestinal nematodes of Horro sheep in Western Oromiya</article-title>. <source>Ethiopia J Vet Med Anim Health</source>. (<year>2013</year>) <volume>5</volume>:<fpage>296</fpage>&#x2013;<lpage>304</lpage>. doi: <pub-id pub-id-type="doi">10.5897/JVMAH2013.0234</pub-id></citation></ref>
<ref id="ref58"><label>58.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sohail</surname> <given-names>M</given-names></name> <name><surname>Nauman-ul-Islam</surname> <given-names>M</given-names></name> <name><surname>Shah</surname> <given-names>S</given-names></name> <name><surname>Shah</surname> <given-names>I</given-names></name> <name><surname>Raziq</surname> <given-names>A</given-names></name> <name><surname>Ilyas</surname> <given-names>M</given-names></name></person-group>. <article-title>Incidence of gastrointestinal parasites in Beetal goats at district Peshawar</article-title>. <source>Pakistan Adv Anim Vet Sci</source>. (<year>2017</year>) <volume>5</volume>:<fpage>205</fpage>&#x2013;<lpage>7</lpage>. doi: <pub-id pub-id-type="doi">10.17582/journal.aavs/2017/5.5.205.207</pub-id></citation></ref>
<ref id="ref59"><label>59.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Arsenopoulos</surname> <given-names>KV</given-names></name> <name><surname>Fthenakis</surname> <given-names>GC</given-names></name> <name><surname>Katsarou</surname> <given-names>EI</given-names></name> <name><surname>Papadopoulos</surname> <given-names>E</given-names></name></person-group>. <article-title>Haemonchosis: A challenging parasitic infection of sheep and goats</article-title>. <source>Animals</source>. (<year>2021</year>) <volume>11</volume>:<fpage>363</fpage>. doi: <pub-id pub-id-type="doi">10.3390/ani11020363</pub-id>, PMID: <pub-id pub-id-type="pmid">33535656</pub-id></citation></ref>
<ref id="ref60"><label>60.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yan</surname> <given-names>X</given-names></name> <name><surname>He</surname> <given-names>S</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <name><surname>Han</surname> <given-names>B</given-names></name> <name><surname>Zhang</surname> <given-names>N</given-names></name> <name><surname>Deng</surname> <given-names>H</given-names></name> <etal/></person-group>. <article-title>Molecular identification and phylogenetic analysis of gastrointestinal nematodes in different populations of Kazakh sheep</article-title>. <source>Exp Parasitol</source>. (<year>2023</year>) <volume>254</volume>:<fpage>26</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.exppara.2023.108625</pub-id></citation></ref>
<ref id="ref61"><label>61.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Santos</surname> <given-names>LL</given-names></name> <name><surname>Salgado</surname> <given-names>JA</given-names></name> <name><surname>Drummond</surname> <given-names>MG</given-names></name> <name><surname>Bastianetto</surname> <given-names>E</given-names></name> <name><surname>Santos</surname> <given-names>CP</given-names></name> <name><surname>Brasil</surname> <given-names>BSAF</given-names></name> <etal/></person-group>. <article-title>Molecular method for the Semiquantitative identification of gastrointestinal nematodes in domestic ruminants</article-title>. <source>Parasitol Res</source>. (<year>2020</year>) <volume>119</volume>:<fpage>529</fpage>&#x2013;<lpage>43</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s00436-019-06569-3</pub-id>, PMID: <pub-id pub-id-type="pmid">31834492</pub-id></citation></ref>
<ref id="ref62"><label>62.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zarlenga</surname> <given-names>DS</given-names></name> <name><surname>Chute</surname> <given-names>MB</given-names></name> <name><surname>Gasbarre</surname> <given-names>LC</given-names></name> <name><surname>Boyd</surname> <given-names>PC</given-names></name></person-group>. <article-title>A multiplex Pcr assay for differentiating economically important gastrointestinal nematodes of cattle</article-title>. <source>Vet Parasitol</source>. (<year>2001</year>) <volume>97</volume>:<fpage>201</fpage>&#x2013;<lpage>11</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0304-4017(01)00410-1</pub-id>, PMID: <pub-id pub-id-type="pmid">11390072</pub-id></citation></ref>
<ref id="ref63"><label>63.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zarlenga</surname> <given-names>DS</given-names></name> <name><surname>Higgins</surname> <given-names>J</given-names></name></person-group>. <article-title>Pcr as a diagnostic and quantitative technique in veterinary parasitology</article-title>. <source>Vet Parasitol</source>. (<year>2001</year>) <volume>101</volume>:<fpage>215</fpage>&#x2013;<lpage>30</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0304-4017(01)00568-4</pub-id>, PMID: <pub-id pub-id-type="pmid">11707298</pub-id></citation></ref>
<ref id="ref64"><label>64.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chilton</surname> <given-names>NB</given-names></name></person-group>. <article-title>The use of nuclear ribosomal DNA markers for the identification of Bursate nematodes (order Strongylida) and for the diagnosis of infections</article-title>. <source>Anim Health Res Rev</source>. (<year>2004</year>) <volume>5</volume>:<fpage>173</fpage>&#x2013;<lpage>87</lpage>. doi: <pub-id pub-id-type="doi">10.1079/AHR200497</pub-id>, PMID: <pub-id pub-id-type="pmid">15984323</pub-id></citation></ref>
<ref id="ref65"><label>65.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gasser</surname> <given-names>RB</given-names></name></person-group>. <article-title>Molecular tools&#x2014;advances, opportunities and prospects</article-title>. <source>Vet Parasitol</source>. (<year>2006</year>) <volume>136</volume>:<fpage>69</fpage>&#x2013;<lpage>89</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2005.12.002</pub-id></citation></ref>
<ref id="ref66"><label>66.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wimmer</surname> <given-names>B</given-names></name> <name><surname>Craig</surname> <given-names>B</given-names></name> <name><surname>Pilkington</surname> <given-names>J</given-names></name> <name><surname>Pemberton</surname> <given-names>J</given-names></name></person-group>. <article-title>Non-invasive assessment of parasitic nematode species diversity in wild Soay sheep using molecular markers</article-title>. <source>Int J Parasitol</source>. (<year>2004</year>) <volume>34</volume>:<fpage>625</fpage>&#x2013;<lpage>31</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijpara.2003.11.022</pub-id></citation></ref>
<ref id="ref67"><label>67.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Elmahalawy</surname> <given-names>ST</given-names></name> <name><surname>Halvarsson</surname> <given-names>P</given-names></name> <name><surname>Skarin</surname> <given-names>M</given-names></name> <name><surname>H&#x00F6;glund</surname> <given-names>J</given-names></name></person-group>. <article-title>Droplet digital polymerase chain reaction (Ddpcr) as a novel method for absolute quantification of major gastrointestinal nematodes in sheep</article-title>. <source>Vet Parasitol</source>. (<year>2018</year>) <volume>261</volume>:<fpage>1</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2018.07.008</pub-id>, PMID: <pub-id pub-id-type="pmid">30253846</pub-id></citation></ref>
<ref id="ref68"><label>68.</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Huby-Chilton</surname> <given-names>F</given-names></name> <name><surname>Chilton</surname> <given-names>NB</given-names></name> <name><surname>Lankester</surname> <given-names>MW</given-names></name> <name><surname>Gajadhar</surname> <given-names>AA</given-names></name></person-group>. <article-title>Single-Strand conformation polymorphism (Sscp) analysis as a new diagnostic tool to distinguish dorsal-Spined larvae of the Elaphostrongylinae (Nematoda: Protostrongylidae) from Cervids</article-title>. <source>Vet Parasitol</source>. (<year>2006</year>) <volume>135</volume>:<fpage>153</fpage>&#x2013;<lpage>62</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetpar.2005.08.001</pub-id>, PMID: <pub-id pub-id-type="pmid">16185812</pub-id></citation></ref>
</ref-list>
</back>
</article>
