Editorial

21 October 2022

Editorial: Systems modeling: Approaches and applications–Volume II

Daniel Garrido

Alberto J. M. Martín

and

Ernesto Pérez-Rueda

1,583 views

0 citations

Editors

Alberto Jesus Martin

Science for Life Foundation

Ernesto Perez-Rueda

Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas. Universidad Nacional Autónoma de México

Daniel Garrido

Pontificia Universidad Católica de Chile

Impact

Original Research

13 September 2022

Dynamic Modelling of DNA Repair Pathway at the Molecular Level: A New Perspective

Paola Lecca

and

Adaoha E. C. Ihekwaba-Ndibe

3,309 views

4 citations

Original Research

14 July 2022

Time-Optimal Adaptation in Metabolic Network Models

Markus A. Köbis

, 1 more and

Ralf Steuer

1,598 views

1 citations

Brief Research Report

14 July 2022

Generalized Property-Based Encoders and Digital Signal Processing Facilitate Predictive Tasks in Protein Engineering

David Medina-Ortiz

, 5 more and

Álvaro Olivera-Nappa

2,526 views

13 citations

Original Research

12 July 2022

Mapping CAR T-Cell Design Space Using Agent-Based Models

Alexis N. Prybutok

, 2 more and

Neda Bagheri

8,033 views

18 citations

Original Research

31 May 2022

An Epistatic Network Describes oppA and glgB as Relevant Genes for Mycobacterium tuberculosis

Ali-Berenice Posada-Reyes

, 3 more and

Salvador Fonseca-Coronado

2,393 views

2 citations

Original Research

18 May 2022

Modeling Calcium Signaling in S. cerevisiae Highlights the Role and Regulation of the Calmodulin-Calcineurin Pathway in Response to Hypotonic Shock

Simone Spolaor

, 4 more and

Daniela Besozzi

3,292 views

5 citations

Original Research

16 May 2022

Predicting Metabolic Adaptation Under Dynamic Substrate Conditions Using a Resource-Dependent Kinetic Model: A Case Study Using Saccharomyces cerevisiae

K. J. A. Verhagen

, 2 more and

S. A. Wahl

2,289 views

1 citations

Original Research

04 May 2022

Discrete Biochemical Systems Theory

Eberhard O. Voit

and

Daniel V. Olivença

2,705 views

8 citations

Review

29 April 2022

Generalized Structural Kinetic Modeling: A Survey and Guide

Jana C. Massing

and

Thilo Gross

2,043 views

0 citations

Original Research

27 April 2022

Combination of Genome-Scale Models and Bioreactor Dynamics to Optimize the Production of Commodity Chemicals

Jorge Lázaro

, 5 more and

Jorge Júlvez

3,040 views

2 citations

Original Research

11 April 2022

Cyclic Attractors Are Critical for Macrophage Differentiation, Heterogeneity, and Plasticity

Manuel Azaid Ordaz-Arias

, 3 more and

Yalbi Itzel Balderas-Martínez

3,669 views

10 citations

Original Research

06 April 2022

Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth

Miguel Ponce-de-Leon

, 4 more and

Alfonso Valencia

3,282 views

11 citations

Original Research

29 March 2022

Modeling and Optimization of a Molecular Biocontroller for the Regulation of Complex Metabolic Pathways

Yadira Boada

, 2 more and

Alejandro Vignoni

2,717 views

7 citations

Original Research

14 March 2022

GAL Regulon in the Yeast S. cerevisiae is Highly Evolvable via Acquisition in the Coding Regions of the Regulatory Elements of the Network

Rajeshkannan

, 1 more and

Supreet Saini

6,277 views

2 citations

Original Research

08 March 2022

Applications of Coarse-Grained Models in Metabolic Engineering

Dieu Thi Doan

, 2 more and

Andreas Kremling

2,776 views

6 citations

Methods

02 March 2022

UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling

Gautier Stoll

, 6 more and

Laurence Calzone

4,073 views

10 citations

Methods

23 February 2022

Optimal Experimental Design Based on Two-Dimensional Likelihood Profiles

Tim Litwin

, 1 more and

Clemens Kreutz

2,463 views

2 citations

Original Research

23 February 2022

Three-Dimensional Model of Sub-Plasmalemmal Ca2+ Microdomains Evoked by T Cell Receptor/CD3 Complex Stimulation

Diana Gil

, 2 more and

Geneviève Dupont

2,746 views

9 citations

Original Research

15 February 2022

Dynamic Control Balancing Cell Proliferation and Inflammation is Crucial for an Effective Immune Response to Malaria

Anuj Gupta

, 1 more and

Eberhard O. Voit

4,168 views

11 citations

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Systems Modeling: Approaches and Applications, Volume II

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