Small Scale Spatial and Temporal Patterns in Particles, Plankton, and Other Organisms

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An illustrative example showing the different steps in holographic data processing: (A) A sample raw unprocessed hologram; (B) The same image after background subtraction, with regions of interest highlighted, and showing only interference patterns; (C) The in-focus diatom chains at different reconstruction depths (z) within the sample volume in the highlighted region; and (D) The 2-D composite image, where all in-focus particles are collapsed onto the same plane for further analysis.
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Structured nutrient landscapes found in the ocean can be quantitatively reproduced in laboratory settings using microfluidics, photolysis of caged resources, and discrete nutrient particles. (A) Various biological processes produce resources which may be (i) dissolved, (ii) particulate, or (iii) a combination of both. (B) Realistic microenvironments can be recreated using (i) photolysis of caged compounds to produce custom DOM landscapes (Brumley et al., 2019; Carrara et al., 2020); (ii) spatial arrays of particles (e.g., chitin or alginate) (Datta et al., 2016); or (iii) both. Within these custom arenas, bacterial chemotaxis and population kinetics can be tracked over timescales from milliseconds to days. Transitions between planktonic (purple) and surface-attached bacteria (yellow) can also be quantified (Yawata et al., 2014).
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