Microbial Ecosystems of Plant-based Agricultural Production Systems: Methods, Impacts, and Implications for Crop Improvement and Yield Enhancement

The study of microbial ecosystems within plant-based agricultural production systems has garnered significant attention due to the intricate and complex interactions between plants and their associated microorganisms. These interactions are so interdependent that plants are now often viewed as "holobionts," encompassing both prokaryotic and eukaryotic species. This perspective challenges traditional notions of organisms as biologically independent units. Recent research has highlighted the potential of leveraging these interactions to enhance agricultural productivity. Key areas of interest include the identification of biocontrol and plant growth-promoting microorganisms, as well as the development of innovative crop production methods such as intercropping. Despite significant technological and analytical advancements, there remain substantial gaps in translating microbiome research into practical agricultural solutions. Addressing these gaps is crucial for achieving sustainable crop improvement and yield enhancement.

This research topic aims to provide a comprehensive forum for cutting-edge research on microbial ecosystems in crop production. The primary objectives include understanding the diverse array of microorganisms associated with agricultural plants and exploring their potential applications in agronomic practices. Specific questions to be addressed include how microbial interactions can be harnessed for crop pest mitigation, the identification of beneficial microbial taxa, and the development of methodologies for accurate and reproducible microbial data generation and analysis. By focusing on these areas, the research aims to bridge the gap between microbiome discoveries and their practical applications in agriculture.

To gather further insights into the microbial ecosystems of plant-based agricultural production systems, we welcome articles addressing, but not limited to, the following themes:

- Microbe-microbe and microbe-host interactions in agricultural contexts
- Effects of agronomic practices such as crop rotation, nutrient application, and intercropping on microbial life
- Crop breeding for traits that enhance beneficial microbial interactions
- Microbial ecotoxicology, including the impact of agricultural chemicals on microbial ecosystems
- Detection and mitigation of plant pathogens in various agricultural systems
- Novel diagnostic or analytical methods for studying microbial ecosystems
- Review papers identifying research gaps, providing historical context, or outlining promising future research directions

Article types and fees

This Research Topic accepts the following article types, unless otherwise specified in the Research Topic description:

• Brief Research Report
• Case Report
• Classification
• Clinical Trial
• Editorial
• FAIR² Data
• FAIR² DATA Direct Submission
• General Commentary
• Hypothesis and Theory
• ... View all formats

Articles that are accepted for publication by our external editors following rigorous peer review incur a publishing fee charged to Authors, institutions, or funders.

Article types

This Research Topic accepts the following article types, unless otherwise specified in the Research Topic description:

• Brief Research Report
• Case Report
• Classification
• Clinical Trial
• Editorial
• FAIR² Data
• FAIR² DATA Direct Submission
• General Commentary
• Hypothesis and Theory
• Methods
• Mini Review
• Opinion
• Original Research
• Perspective
• Review
• Systematic Review
• Technology and Code

Keywords: Biocontrol, Phytopathogen, Plant Growth Promoting Bacteria, Agronomic Practices, Crop Microbiome

Important note: All contributions to this Research Topic must be within the scope of the section and journal to which they are submitted, as defined in their mission statements. Frontiers reserves the right to guide an out-of-scope manuscript to a more suitable section or journal at any stage of peer review.