Viral Genetic Diversity | List of Frontiers open access articles

Review

Published on 11 Sep 2012

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

in Virology

Niko Beerenwinkel
Huldrych F. Günthard
Volker Roth
Karin J. Metzner

Frontiers in Microbiology

doi 10.3389/fmicb.2012.00329

29,653 views
222 citations

Methods

Published on 21 Feb 2022

Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages

in Infectious Diseases – Surveillance, Prevention and Treatment

Fatima Mostefai
Isabel Gamache
Arnaud N'Guessan
Justin Pelletier
Jessie Huang
Carmen Lia Murall
Ahmad Pesaranghader
Vanda Gaonac'h-Lovejoy
David J. Hamelin
Raphaël Poujol

Frontiers in Medicine

doi 10.3389/fmed.2022.826746

7,627 views
14 citations

Original Research

Published on 14 Jan 2022

Molecular Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 Isolates From Central Inner Sardinia

in Virology

Paolo Malune
Giovanna Piras
Maria Monne
Maura Fiamma
Rosanna Asproni
Tatiana Fancello
Antonio Manai
Franco Carta
Giovanna Pira
Patrizia Fancello

Frontiers in Microbiology

doi 10.3389/fmicb.2021.827799

2,637 views
5 citations

Original Research

Published on 06 Jun 2018

Identification of Conserved Amino Acid Substitutions During Serial Infection of Pregnant Cattle and Sheep With Bovine Viral Diarrhea Virus

in Virology

Thibaud Kuca
Thomas Passler
Benjamin W. Newcomer
John D. Neill
Patricia K. Galik
Kay P. Riddell
Yijing Zhang
Paul H. Walz

Frontiers in Microbiology

doi 10.3389/fmicb.2018.01109

2,652 views
12 citations

Original Research

Published on 09 Feb 2023

Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus

in Virology

Hepzibar Clilverd
Gerard Martín-Valls
Yanli Li
Marga Martín
Martí Cortey
Enric Mateu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1109881

5,141 views
14 citations

Original Research

Published on 15 Jul 2021

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China

in Virology

Nan Shao
Bo Liu
Yan Xiao
Xinming Wang
Lili Ren
Jie Dong
Lilian Sun
Yafang Zhu
Ting Zhang
Fan Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.679246

8,098 views
22 citations

Original Research

Published on 08 Aug 2023

Tracking the evolution of the SARS-CoV-2 Delta variant of concern: analysis of genetic diversity and selection across the whole viral genome

in Infectious Agents and Disease

Katherine Li
Stephanie Melnychuk
Paul Sandstrom
Hezhao Ji

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1222301

2,499 views
4 citations

Original Research

Published on 31 Aug 2022

Spatiotemporal dynamics of HIV-1 CRF63_02A6 sub-epidemic

in Virology

Mariya V. Sivay
Lada V. Maksimenko
Irina P. Osipova
Anastasiya A. Nefedova
Mariya P. Gashnikova
Dariya P. Zyryanova
Vasiliy E. Ekushov
Alexei V. Totmenin
Tatyana M. Nalimova
Vladimir V. Ivlev

Frontiers in Microbiology

doi 10.3389/fmicb.2022.946787

2,991 views
3 citations

Articles

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages

Molecular Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 Isolates From Central Inner Sardinia

Identification of Conserved Amino Acid Substitutions During Serial Infection of Pregnant Cattle and Sheep With Bovine Viral Diarrhea Virus

Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China

Tracking the evolution of the SARS-CoV-2 Delta variant of concern: analysis of genetic diversity and selection across the whole viral genome

Spatiotemporal dynamics of HIV-1 CRF63_02A6 sub-epidemic