Abstract
The exquisite intricacies of neural circuits are fundamental to an animal’s diverse and complex repertoire of sensory and motor functions. The ability to precisely map neural circuits and to selectively manipulate neural activity is critical to understanding brain function and has, therefore been a long-standing goal for neuroscientists. The recent development of optogenetic tools, combined with transgenic mouse lines, has endowed us with unprecedented spatiotemporal precision in circuit analysis. These advances greatly expand the scope of tractable experimental investigations. Here, in the first half of the review, we will present applications of optogenetics in identifying connectivity between different local neuronal cell types and of long-range projections with both in vitro and in vivo methods. We will then discuss how these tools can be used to reveal the functional roles of these cell-type specific connections in governing sensory information processing, and learning and memory in the visual cortex, somatosensory cortex, and motor cortex. Finally, we will discuss the prospect of new optogenetic tools and how their application can further advance modern neuroscience. In summary, this review serves as a primer to exemplify how optogenetics can be used in sophisticated modern circuit analyses at the levels of synapses, cells, network connectivity and behaviors.
Introduction
In the past decades, numerous newly developed techniques have greatly assisted in dissecting connectivity and function of the brain. However, only a handful of them have influenced and advanced modern neuroscience as heavily as optogenetics. This state-of-the-art technique utilizes light-sensitive channels or pumps, known as opsins, to manipulate the activity of neurons. In addition, when it is combined with the Cre-Lox recombinase system, it provides a spatiotemporally precise method to reversibly turn on and off the activity of genetically defined or projection-specific groups of neurons. In this review, we will first highlight the use of optogenetics in the investigation of neural connectivity, both within and between brain regions, and then its applications in identifying the functional roles of specific neural circuit components in behavior and physiology. Finally, we will discuss some of the limitations and future directions of optogenetics. Although most of the examples in this review come from studies of sensory and motor systems, their diverse experimental designs and underlying principles are potentially useful for advancing our understanding of the structure and function of other brain circuits.
Opsins used in optogenetics were first discovered in microbes (Soliman and Trüper, 1982; ) and later cloned and introduced into neurons (). These microbial opsins can be divided into excitatory opsins and inhibitory opsins. The most commonly used excitatory opsin is channelrhodopsin (ChR2), a cation channel that opens in the presence of blue light (∼470 nm) to depolarize neurons (). In contrast, inhibitory opsins, such as the chloride pump halorhodopsin (eNpHR) and the proton pump Archaerhodospin (Arch), mediate hyperpolarizing currents which impede action potentials upon yellow light illumination (∼580 nm) (Zhang et al., 2007; ). In this review, we will primarily focus on the applications of commonly used opsins, rather than covering all the different variants. However, we will introduce a few recently developed opsins in order to illustrate the diverse properties of optogenetics and its unique applications.
Connectivity
Neural circuits consist of heterogeneous cell-types receiving distinct inputs from both local and long-range sources. Dissecting the intricate connections of these neural circuits has been a long-standing challenge for neuroscientists, largely due to technical limitations in identifying and targeting specific neuronal cell-types. Although traditional methods of circuit analysis have been useful in gaining a gross understanding of macroscale and mesoscale features of brain connectivity, these techniques are limited. For example, anatomical circuit tracing with anterograde or retrograde reagents can only suggest potential innervations, without confirming the presence of functional synaptic contacts (Zeng, 2018); electron microscopy, despite its capability of identifying synapses, is labor and time intensive and cannot reveal the type or function of the synapse (); electrical stimulation of axonal tracts, which is used to reveal functional connectivity, indiscriminately activates all fibers passing the stimulation site (); pairwise whole-cell recording, a gold standard for establishing connectivity, is technically challenging and time consuming and suffers from a small yield (Xue et al., 2014). Mitigating all the above issues, optogenetics, combined with the Cre-Lox recombinase system, provides a cell-type specific and high-throughput method for dissecting circuit connectivity.
Local Connectivity
Neural circuits are characterized by entangled connections between various types of neurons within the network, making detailed dissection of local circuit connectivity extremely difficult. Optogenetics has simplified experimental designs for analysis of local connectivity and has greatly boosted the efficiency of data collection. For example, by selectively expressing ChR2 in a specific population of neurons, one can study the connectivity from those ChR2-expressing neurons onto other non-ChR2 expressing neurons with ease and speed (; ). In this experimental design, optogenetic stimulation replaces the electrical stimulation in paired whole-cell clamp recordings and greatly increases the yield and the chance of detecting connectivity, since multiple presynaptic neurons can be activated simultaneously by the light-evoked current (Seeman et al., 2018) and the spatiotemporal pattern of optogenetic stimulation can be flexibly readjusted (; ). Notably, when this optogenetic method of local circuit analysis was compared to traditional pairwise patch clamp methods, both gave rise to similar connection probabilities, validating the utility of optogenetics in the study of local circuit connectivity (Seeman et al., 2018).
When combined with cell-type specific Cre mouse lines, optogenetics can also be used to study the connectivity of genetically-defined populations within local circuits. For instance, in the visual cortex, Pfeffer et al. (2013) examined the pattern of connectivity between three major subtypes of GABAergic inhibitory interneurons, parvalbumin (Pvalb), somatostatin (Sst), and vasoactive intestinal peptide (VIP) expressing interneurons (Figure 1A). Until recently, these different GABAergic subtypes were poorly characterized, as they are intermingled in the cerebral cortex and could not be specifically targeted with electrical or pharmacological manipulations. By expressing ChR2 in one population at a time and recording from different interneuron subtypes identified by single-cell reverse-transcription PCR, the authors were able to elucidate microcircuit motifs. They found that Pvalb interneurons preferentially inhibit pyramidal neurons and other Pvalb interneurons; Sst interneurons preferentially inhibit pyramidal neurons and all other interneuron types except themselves; and VIP interneurons preferentially inhibit Sst interneurons (Pfeffer et al., 2013). The sample sizes required to deduce connection probabilities and circuit motifs are difficult to achieve using paired recordings. But with a high-throughput optogenetic design, as the above experiment, cell-type specific connectivity analysis becomes surmountable.
FIGURE 1
Local connectivity can also be investigated between layers of the cortex. For instance, used optogenetics to investigate how layer 6 (L6) excitatory neurons can regulate the strength of cortical responses throughout cortical depth. With the help of the L6 specific Cre mouse line, neurotensin receptor 1 (NTSR1)-Cre, they optogenetically stimulated L6 neurons and identified the recruitment of unique L6 fast-spiking interneurons with massive translaminar axons whose activation suppresses neurons across laminar layers.
Projection-Specific Connectivity
Prior to the development of optogenetics, it was practically impossible to activate only a specific group of axonal projections. Electrical stimulation of axon tracts indiscriminately activates all fibers that pass through the stimulated area, including axons originating from different brain structures and ones projecting to different areas (Schwarz et al., 2015). Therefore, electrical stimulation will activate several pathways in parallel, which complicates data interpretation. These off-target effects can now be mitigated through the use of optogenetics. Optogenetics enables specificity at several levels: the injection location of the opsin-expressing virus provides a degree of spatial specificity for presynaptic source; the use of the Cre-lox system enables cell-type specificity; and the range of the light illumination provides a final level of specificity. For example, this method was successfully applied to explore the differential connectivity of thalamocortical and corticothalamic pathways that are entwined with each other (). This approach was also applied to dissect specific basolateral amygdala projections to the central nucleus of the amygdala (Tye et al., 2011).
The power of optogenetic-based projection analysis is exemplified by a study that dissected the laminar organization of long-range callosal projections linking the barrel cortices of the two hemispheres in slice preparation (Petreanu et al., 2007). Layer 2/3 of the barrel cortex receives input from several structures such as the thalamus, other cortical areas including the contralateral barrel cortex, and local circuits (). Since the axons of these inputs are intermingled in the barrel cortex, it is impossible to electrically stimulate only axons coming from the contralateral barrel cortex, namely the callosal axons, in order to investigate the laminar organization of their innervations. Therefore to address this question, Petreanu et al. (2007) unilaterally expressed ChR2 in layer 2/3 of the barrel cortex contralateral to the recording sites (Figure 1B). Because ChR2 was expressed throughout the neurons, including their axons projecting to the recording site of the barrel cortex, blue light illumination over the recording sites activated ChR2-expressing axons directly and thus stimulated only callosal input. Using this so-called ChR2-assisted circuit mapping (CRACM), the authors (Petreanu et al., 2007) systematically examined the strength of long-range callosal innervation received by neurons in individual layers of the barrel cortex and found that laminar specificity of this long-range cortical innervation is identical to local innervation (Petreanu et al., 2007). This study demonstrated that the CRACM method can reliably drive projection-specific inputs without the need to preserve their tracts in slices. However, one should be cautious of some limitations of this technique: its validation requires knowledge of the anatomy and cell types of the circuits under investigation; and severed axons in slice preparation have a limited supply of synaptic vesicles, which can be quickly depleted if one uses prolonged or particularly strong stimulation ().
Optogenetics can also be used to locate the synaptic innervation of long-range projections tagged by the expression of ChR2. In a subsequent study, Petreanu et al. (2009) slightly modified their CRACM protocol (Figure 1B): a blue laser beam was restricted to a small spot and raster scanned the area containing the dendritic tree of a cortical pyramidal neuron; direct activation of presynaptic terminals was achieved by pharmacologically blocking the propagation of optogenetically evoked action potentials. By recording from a postsynaptic neuron while systematically photostimulating its inputs at different locations, one can generate a 2D map of the long-range connections, a method named subcellular ChR2-assisted circuit mapping (sCRACM). With this elegant design, Petreanu et al. examined the spatial distribution of synaptic inputs onto the dendritic arborization of layer 3 and layer 5 pyramidal neurons in the barrel cortex (Petreanu et al., 2009). They found that different inputs target different apical or basal domains of those neurons.
Establishing Polysynaptic vs. Monosynaptic Connections
Optogenetic stimulation of long-range projections can induce responses in recorded neurons via direct synaptic contacts (monosynaptic input) and/or indirectly via recurrent connections from other neurons in the network (polysynaptic input). To establish monosynaptic connectivity, one can pair ChR2 assisted optogenetic stimulation with pharmacology. By blocking voltage-gated sodium channels with tetrodotoxin (TTX) and potassium channels with 4-Aminopyridine (4AP), action potentials and thereby polysynaptic inputs will be prevented. Consequently, any remaining light-evoked response in recorded neurons must come directly from the activation of axon terminals that express ChR2. For instance, the long-range connectivity between the visual cortex and the brainstem accessory optic nuclei (AOS) was investigated by ; Figure 1C). The authors expressed ChR2 in the visual cortex and then photostimulated terminals of corticofugal axons while performing whole-cell recordings from AOS neurons. By suppressing action potentials with two different cocktails of drugs, they definitively confirmed the presence of monosynaptic connections from the visual cortex to the AOS. Without optogenetics, this experiment would not be possible, as the corticofugal axons from the visual cortex to AOS do not form a single nerve bundle, which is required for effective electrical stimulation, but instead intermingle with axons of other types of inputs. A similar design was also used to examine monosynaptic connectivity from burst-firing neurons in the subiculum to the neurons in the entorhinal cortex (Wozny et al., 2018). ChR2 was selectively expressed in burst-firing neurons by injecting the Cre-dependent ChR2 virus into the subiculum of VGLUT2-ires-Cre mice, where Cre exists only in burst-firing neurons. In the presence of TTX, the authors elucidated monosynaptic connections from the axons of those burst-firing subiculum neurons with slice electrophysiology.
Characterization of the Synapse
Beyond the identification of connectivity, when combined with pharmacology, optogenetics can be used to probe the properties of synapses. It was thought that dopaminergic projections might co-release glutamate and dopamine (Stuber et al., 2010). However, evidence supporting this idea came from studies where electrical stimulation was used to activate dopaminergic neurons, which could activate glutamatergic neurons in the neighborhood (). The non-specific activation makes it difficult to discern whether the release of glutamate and dopamine indeed occur from the same terminal or two different termimals (). To solve this issue, Tritsch et al. (2012) expressed ChR2, using the Slc6a3-IRES-Cre mouse line, in dopaminergic neurons to specifically activate dopaminergic neurons in the substantia nigra pars compacta (SNc) and pharmacologically isolated currents mediated by different neurostransmitters. Surprisingly, when they activated these neurons in the SNc and recorded from neurons in the dorsal striatum, they found both glutamatergic excitatory post-synaptic current and GABAergic inhibitory post-synaptic current, as well as amperometric dopamine transients. By combining cell-type specific optogenetics with pharmacology, they were able to definitively identify co-release of dopamine, glutamate and GABA (Tritsch et al., 2012). A similar method was also used to identify the co-release of both glutamate and dopamine by dopaminergic axonal terminals coming from the ventral tagmental area (VTA) to the prefrontal cortex (Perez-Lopez et al., 2018).
The ability to selectively activate specific projections using optogenetics also enables the characterization of synapses of local versus long-range neuronal populations. The VTA receives long-range inhibitory input from GABAergic neurons in the rostromedial tegmental area. Using ChR2, Polter et al. (2018) activated this inhitibitory input and observed that glycine receptor blocker, strychnine, significantly reduced the amplitude of inhibitory postsynaptic currents (IPSCs) in VTA neurons. They then added bicuculline, a GABAA receptor blocker, along with strychnine and all residual IPSCs were abolished, suggesting this inhibitory projection co-releases GABA and glycine. They also performed the same recording with ChR2 expressed in VTA GABAergic interneurons to stimulate local inhibition, but did not find co-release of glycine (Polter et al., 2018). They proceeded to perform further characterization of these two inhibitory inputs received by VTA neurons. For example, they utilized light stimulation to compare paired-pulse ratios of those two types of inhibitory synapses, demonstrating how optogenetics can be used to characterize synaptic properties of distinct neuronal populations.
Dual-Channel Mapping
A single neuron might receive multiple inputs coming from different regions, representing multiplexed streams of information transmission (Petreanu et al., 2009; ). Understanding this input convergence is a fundamental but difficult task since it requires the technical capability of individually manipulating different types of inputs. This independent control of different inputs is impossible with electrical stimulation when the axons of those inputs are intermingled. This technical challenge was solved through the use of dual-color optogenetics when Hooks et al. studied the convergence of two different intermingled inputs in the primary motor cortex (; Figure 1D). In order to achieve this, they chose two opsin variants that prefer different wavelengths of light: blue light sensitive ChR2 was used to excite axons originating from the barrel cortex and ReaChR, an opsin activated by orange light (), to perturb input from the posterior medial thalamic nucleus. Despite the distinct optimal excitation wavelengths of the two opsins, blue light can in fact excite ReaChR as well as ChR2. Therefore, when illuminated by blue light, both pathways will be stimulated, complicating data interpretation. To solve this complication, the authors created a clever protocol that reversibly inactivates ReaChR prior to activating ChR2 (), allowing complete separation of the two inputs. Indeed, with whole-cell recording they found that the input from the somatosensory cortex and that from the thalamus converge on the same layer 2/3 neurons in the motor cortex. Since this optogenetic dual-channel stimulation does not require the spatial segregation of axons of different inputs – a condition demanded by electrical stimulation – this mapping method can in principle be generalized on any convergent circuit system and is especially indispensable in the case where axons of distinct origins intermingle.
In vitro slice electrophysiology is a gold standard to determine connectivity between pairs of neurons. Although care is taken to preserve the integrity of the circuit during slice preparation and to maintain similar physiological conditions to live animals during recording, some damage and cell death is inevitable, and impedes faithful quantification of neuronal connectivity. To address this issue, efforts had been made to examine connectivity in a physiologically pristine environment with the help of optogenetics. For example, Pala and Petersen (2015) performed in vivo whole-cell recordings from GABAergic interneurons in L2/3 of the barrel cortex to examine the connection from excitatory pyramidal neurons. To precisely measure unitary excitatory postsynaptic potentials (uEPSPs) in GABAergic interneurons, these researchers introduced plasmid DNA encoding ChR2 into a single L2/3 pyramidal cell with electroporation and elicited one action potential per stimulus with very brief light pulses. In particular, they compared the uEPSPs response between Pvalb and Sst inhibitory neurons, finding that each inhibitory population differed in the probability, time course, strength, reliability, and short-term synaptic plasticity of their response to excitatory stimulation. This finding largely agrees with previous in vitro results (Pala and Petersen, 2015).
Functional Dissection
Thus far, we have discussed how optogenetic strategies can aid the dissection of circuit connectivity. Beyond characterizing connectivity, optogenetics is also an extremely powerful tool when investigating the functional roles of specific neural circuits in animal behavior and physiology. In vivo investigations present a unique set of demands and limitations. For many years, researchers have relied on extracellular recordings to investigate neural activity in vivo. Although this method allows monitoring activity from large populations of neurons, the type of neuron recorded cannot be identified in most cases, limiting its applications in the study of cell-type specific functions. Optogenetic tagging provides a feasible solution to this problem. For example, restricted the expression of ChR2 to Pvalb interneurons in the auditory cortex and inserted a recording electrode into this cortical area. When they illuminated this area with brief pulses of blue light, short latency spikes that are precisely synchronized with the light pulse were reliably elicited in a population of neurons, distinguishing them as Pvalb interneurons expressing ChR2. These authors also used this approach to identify auditory cortical neurons projecting to the contralateral hemisphere, namely callosal projection neurons, for which a retrograde herpes simplex virus-1 (HSV-1) encoding ChR2 injected to the auditory cortex in one hemisphere was used to tag callosal projection neurons in the other hemisphere (). These two examples demonstrate the utility of this optogenetic tagging technique for both cell-type and projection-type specific functional circuit analyses.
In addition to identifying neuron type in vivo, optogenetics can also be used to manipulate neuronal activity during behavior. The canonical experiment to define a neural correlate of a behavior is to activate or silence the putative correlate in vivo and assess whether and how the behavior is altered. For decades, the field had relied on electrical stimulation/lesions and pharmacological activation/silencing, however, these techniques of circuit manipulation have intrinsic problems. They offer little to no temporal precision, nor cell-type specificity; furthermore, lesions are permanent and can result in unpredicted plasticity and compensatory mechanisms that confound results (Whishaw, 2000; ). The advent of optogenetics enables immediately reversible manipulation and allows trial-by-trial and within-animal comparisons in a single session. The remainder of the review will examine how the use of optogenetics has enabled cell-type and projection-specific circuit dissection of visual, somatosensory and motor function in vivo.
Visual Cortex
Since Hubel and Weisel first discovered the fundamentals of visual processing in the primary visual cortex (, , ), numerous studies have extensively examined and characterized visual processing in different model systems. These studies revealed that stimulus features such as orientation and direction are encoded in the mammalian visual cortex through tuned neural responses at both the level of single neurons and cortical columns. However, due to the prevalence of pyramidal neurons over GABAergic inhibitory neurons in the cortex, the “blind” electrophysiological recording methods used in these studies primarily characterized pyramidal neurons and could not clearly elucidate how other cell-types might contribute to this neural code.
A long-standing question in the field has been to understand how orientation selectivity emerges in the visual cortex. For many years it had been speculated that inhibition from GABAergic interneurons may shape tuning of pyramidal neurons (Sillito et al., 1980; Sato et al., 1996; Ringach et al., 2003; ), although findings have been inconclusive until recently since this hypothesis could not be directly examined before the invention of optogenetics and inhibitory neuron-specific mouse lines. Using high-speed calcium imaging or in vivo cell-attached recordings paired with subtype-specific optogenetic activation, Wilson et al. (2012) demonstrated that different subtypes of GABAergic interneurons indeed have distinct roles in shaping pyramidal neuron responses to visual stimuli. The authors expressed ChR2 in either Pvalb or Sst interneurons in the primary visual cortex in order to activate each subtype independently while showing the mouse oriented drifting gratings (Figure 2A). They also used simultaneous calcium imaging or cell-attached recordings to characterize the orientation tuning of pyramidal neurons. By comparing pyramidal neuron tuning curves with and without optogenetic activation of Sst or Pvalb interneurons, they found that Pvalb and Sst populations exert distinct computational control on the responses of pyramidal neurons. Sst interneuron activation resulted in uniform subtractive inhibition in pyramidal neurons across all directions of drifting gratings. Pvalb interneuron activation, on the other hand, led to divisive inhibition in pyramidal cells, where the effects of inhibition were strongest when the grating was at the neuron’s preferred orientation. In this way, Sst interneurons sharpen stimulus selectivity in the visual cortex, while Pvalb interneurons modulate response gain but preserve stimulus selectivity (Wilson et al., 2012). Moreover, bidirectional manipulation of Pvalb interneurons in another study using ChR2 or Arch to activate or silence Pvalb interneurons respectively, further supports the role of Pvalb interneurons in modulating the gain of pyramidal neuron responses without strongly altering tuning properties (). Importantly, without this cell-type specific optogenetics, it would be impossible to target or manipulate different types of neurons.
FIGURE 2
In addition to its applications in local microcircuitry, optogenetics has also been used to investigate the role of long-range inputs in visual processing. To parse the role of specific inputs to the visual cortex, Zhang et al. (2014) used a virus to express ChR2 in the cingulate cortex and then shone blue light on the visual cortex, thus exciting only the axons projecting from the cingulate cortex to the visual cortex. Activation of this top-down projection sharpened tuning of pyramidal neurons in the visual cortex and improved behavioral performance in a visual discrimination task (Zhang et al., 2014). The authors further examined which cell-types in the visual cortex might be receiving this input from the cingulate cortex. Tracing experiments revealed that Pvalb, Sst and VIP interneurons in the visual cortex all receive long-range top-down input from the cingulate cortex. Hence, to delineate subtype-specific roles in this projection, the authors again, expressed ChR2 in the cingulate cortex, but they additionally expressed the inhibitory opsin, eNpHR, in either Pvalb, Sst or VIP interneurons in the visual cortex. By patching pyramidal neurons in the visual cortex and either (i) silencing one subtype of local inhibitory neurons, (ii) activating cingulate axons, or (iii) doing both simultaneously, the effect of cingulate cortex projections on the different inhibitory populations was dissected. By taking advantage of projection-based and cell-type based optogenetics, the researchers were able to demonstrate that cingulate cortex input activates all three types of inhibitory neurons. However, Sst and Pvalb interneuron activation inhibited a broad cortical area, while VIP interneuron activation selectively enhances responses in the center region. Therefore, VIP interneurons may have a unique role of disinhibiting the center, while Sst interneurons inhibit the surround, thus explaining a facilitatory center and a suppressive surround of top-down modulation during visual processing.
Somatosensory Cortex
Optogenetics has also been employed in the somatosensory cortex to dissect the function of specific projections during perception of sensory stimuli. By expressing the inhibitory opsin Arch in the secondary motor cortex (M2),
Another study used optogenetics in S1 to reveal the importance of dendritic activity in layer 5 (L5) pyramidal neurons in sensory perception (Takahashi et al., 2016). The authors first trained mice to lick for a reward following whisker deflection until an 80% success rate was achieved. They then constructed a psychometric curve by varying the intensity of the whisker deflection to uncover the intensity threshold for perceptual detection (Figure 2B). A multi-pronged approach was then employed to dissect the neural correlate of sensory perception in S1. Remarkably, using three distinct optogenetic approaches, the animal’s detection probability curve was shifted bidirectionally. First, the authors used iChloC, an inhibitory chloride-conducting channelrhodopsin (Wietek et al., 2015), expressed in L5 pyramidal neurons to silence apical dendrites of L5 pyramidal neurons in behaving mice, which was achieved by calibrating light intensity ex vivo to target superficial layers of S1 without affecting activity at the soma of L5 pyramidal neurons located deeper in the cortex. Silencing the L5 pyramidal neuron dendrites shifted the detection probability curve to higher intensity values when compared to light-off trials, implying mice had impaired detection ability. Second, to further understand the local microcircuit, the authors expressed ChR2 in Sst interneurons, which preferentially inhibit apical dendrites of pyramidal neurons. Activating Sst interneurons also significantly shifted the detection probability to higher intensities. Finally, activation of ChR2 expressed in L5 pyramidal neurons shifted the detection probability to significantly lower detection probabilities and caused a substantial increase in false detection rates. The use of optogenetics enables a reversible approach for within animal and within session comparisons between light on and light off trials.
Motor Cortex
The motor cortex is unique among primary cortical areas in that its primary function is to activate muscles and execute movements. Inactivation techniques such as pharmacological inactivation or lesions lack the temporal resolution needed to dissect circuit contributions to specific aspects or components of a movement, such as an arm movement versus digit movement in a reaching task. Additionally, motor cortex lesions impair movement but do not result in the complete loss of movement (
The ultra-fine temporal precision of optogenetics makes it an ideal tool for addressing these open questions regarding the motor cortex. In recent years, the use of optogenetics in the motor cortex has elicited a range of results, some of which do not support previous findings in lesion studies, further demonstrating how lesion and pharmacological studies can be limiting when probing complex systems conveying multiplexed information. To test the role of the motor cortex in learned behaviors,
Furthermore, learning a new movement has been shown to be associated with the emergence of a reproducible neuronal activation pattern in the motor cortex that is specific to the learned movement (Peters et al., 2014). Subcellularly, motor learning also induces the addition and selective elimination of dendritic spines on pyramidal neurons to reorganize synaptic connections in the motor cortex (Xu et al., 2009; Peters et al., 2014;
The contribution of long-range input to motor function has also been examined using optogenetics. To understand the role of thalamus and the anterior motor lateral area (ALM), two main sources of inputs to the primary motor cortex, in movement,
Optogenetic activation of GABAergic inhibitory neurons in the visual cortex or in the thalamic reticular nucleus has also been used to shut down local recurrent excitation or long-range thalamocortical excitation respectively, in order to elucidate their contribution to cortical visual processing (
Optogenetics in Diverse Animal Models
This review has primarily focused on the use of optogenetics in mice because of the extensive availability of transgenic mouse lines that permit cell-type specific circuit dissection. However, it is important to note that optogenetics can also be used in other animal models. In particular, rats present a desirable animal model, because they can learn more complex tasks, and because their larger size, relative to mice, enables them to tolerate implants more easily. Recently, more and more transgenic rat lines have become available, which makes the aforementioned cell-type specific experimental designs feasible for this animal model. For example, Witten et al. (2011) used Tyrosine hydroxylase (Th):Cre transgenic rats to drive the expression of the Cre recombinase under the dopaminergic specific Th promoter. By injecting Cre-dependent ChR2 virus in the VTA, the expression of ChR2 was restricted to dopaminergic neurons in the VTA. With this model, they investigated cell-type specific circuitry driving positive reinforcement during intracranial self-stimulation (ICSS). During a freely moving ICSS task, optogenetic stimulation of dopaminergic neurons in the VTA occurred when rats nosepoked one of the two identical ports, but not when they poked the other one. This simple optogenetic activation of dopaminergic system during behavior strongly biased rats to the port associated with optogenetic stimulation, but not the other port, thus demonstrating that activation of dopaminergic cells in the VTA is sufficient to drive ICSS.
Optogenetics has also been used in rats to investigate projection-specific contributions to motivation. For instance, Warden et al. (2012) targeted medial prefrontal cortex (mPFC) neurons that project to the dorsal raphe nucleus (DRN) by virally expressing ChR2 in mPFC neurons and photostimulating their axons in the DRN. The authors used a protocol of alternating 2 min light-on epochs followed by 2 min light-off epochs for five cycles during the forced swim test, allowing multiple within session comparisons. They observed a robust increase in kick frequency during light-on epochs relative to light-off epochs. In contrast, when they activated the mPFC-lateral habenula pathway in the same way, kick frequency during light-on epochs was robustly decreased. These projection-specific, opposing behavioral phenomena were not seen when all mPFC neurons were non-selectively photostimulated. These results demonstrate that optogenetic activation of projection-specific pathways arising from the same brain area can result in opposite behavioral effects and further corroborate the need for circuit specific perturbation in behavioral studies.
Optogenetics has also been used in higher mammals, such as Rhesus monkeys, enabling the causal study of circuits involved in complex behaviors and neurological diseases (
Future Directions
New Variants of Opsins
Over the past decade, several newly developed variants of opsins have enabled the use of optogenetics in investigations that were not technically possible with earlier variants. Although this review is not intended to provide a comprehensive overview of different opsins, this section will highlight some experimental designs that leveraged unique properties of engineered opsin variants.
When first introduced into neurons, ChR2 was demonstrated to drive spike trains ranging from 5 to 30 Hz (
One advantage of these ultra fast opsins was demonstrated when studying the importance of long-term potentiation (LTP) for memory formation (
In addition to ChR2 variants with faster kinetics, step function opsin (SFO) (
The level of control achieved through optogenetics can be extended even further using the opto-XR family of opsins. This family of opsins was engineered by replacing the intracellular loops of rhodopsin with those from specific G-protein coupled receptors, allowing photoactivation with light to initiate intracellular signaling pathways (
Single Cell Optogenetics
Neurons in the cortex, even of the same cell type, fire at different times, and this asynchronous firing across space and time is essential for information coding (
In addition to the development of single-cell photostimulation, the engineering of new opsins also contributes to single-cell optogenetics. For example, neurons in most of the brain areas are surrounded by numerous neurites of nearby cells, and most methods for expressing opsins will lead to opsin expression in neighboring neurites as well. As a consequence, even with single-cell photostimulation methods mentioned above, the stimulation light will inevitably stimulate dendrites and axons which pass by the targeted neurons. To address this issue, a high-performance somatic opsin, soCoChR, was generated (Shemesh et al., 2017). The expression of the high-photocurrent channelrhodopsin (CoChR) was restricted primarily to the cell bodies of cortical neurons by fusing a short amino-terminal segment of the kainate receptor KA2 subunit to this opsin. With the help of two-photon CGH, soCoChR allows the activation of individual neurons at cellular resolution with sub-millisecond temporal precision. Future work employing both single-cell stimulation and soCoChR will enable more reliable mapping of neuronal connectivity in intact brain circuits.
Moreover, sub-millisecond optogenetics can also be helpful for exploring the connectivity of fast-spiking neurons, such as interneurons (
Limitations And Alternative Strategies
Optogenetics is, however, not without limitations. In fact, in some circumstances, it can result in paradoxical and undesirable effects. Inhibitory chloride pumps such as eNpHR can lead to a change in inhibitory signaling that outlasts the photostimulation (Raimondo et al., 2012;
Another option for photoinhibition is to use ChR2 to activate GABAergic inhibitory neurons. Although this method is more effective than direct photoinhibition by the proton pumps Arch and Jaws (
Moreover, the methods of expression should also be carefully considered. Transgenic lines result in global opsin expression, which leads to at least two complications: first, photostimulation may activate neurons that are located outside of the target region but have axons passing through this region; second, one-photon photostimulation, which has poor spatial resolution, may activate opsin expressing neurons which neighbor the target region. While the use of virus can resolve the issues associated with transgenenic lines by spatially confining opsin expression, some caveats associated with this expression method should also be considered. First,
Furthermore, in vivo optogenetics is heavily limited by the level of invasiveness. Implementing optogenetics in vivo requires either a cranial window for superficial brain areas or an optical fiber implant to deliver light. For deep brain regions, implants also require aspiration of tissue superficial to the target site. Chemogenetics is therefore an appealing alternative as it is effective, minimally invasive, reversible and highly specific. Chemogenetic approaches include Pharmacologically Selective Actuator Modules (PSAMs) and their corresponding Pharmacologically Selective Effector Modules (PSEMs) (
Other less prevalent solutions to the invasiveness of optogenetics also exist. Transcranial near-infrared optogenetics utilizes synthesized Lanthanide-doped upconversion nanoparticles (UCNPs), which convert near infrared photons into high energy visible light sufficient to activate opsins (
Statements
Author contributions
All authors contributed to writing the review.
Funding
This work was supported by grants from Natural Sciences and Engineering Research Council of Canada (NSERC).
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
optogenetics, neural connectivity, GABAergic neurons, neural circuit function, neural circuits and behavior
Citation
Lee C, Lavoie A, Liu J, Chen SX and Liu B (2020) Light Up the Brain: The Application of Optogenetics in Cell-Type Specific Dissection of Mouse Brain Circuits. Front. Neural Circuits 14:18. doi: 10.3389/fncir.2020.00018
Received
30 December 2019
Accepted
31 March 2020
Published
24 April 2020
Volume
14 - 2020
Edited by
Edward S. Ruthazer, McGill University, Canada
Reviewed by
Jonathan T. Ting, Allen Institute for Brain Science, United States; Antoine Adamantidis, University of Bern, Switzerland
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Copyright
© 2020 Lee, Lavoie, Liu, Chen and Liu.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Simon X. Chen, schen2@uottawa.ca; schen84@gmail.comBao-hua Liu, baohua.liu@utoronto.ca
Disclaimer
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