3d Segmentation | List of Frontiers open access articles

Original Research

Published on 27 Jul 2023

Automatic segmentation of white matter hyperintensities and correlation analysis for cerebral small vessel disease

in Applied Neuroimaging

Bin Xu
Xiaofeng Zhang
Congyu Tian
Wei Yan
Yuanqing Wang
Doudou Zhang
Xiangyun Liao
Xiaodong Cai

Frontiers in Neurology

doi 10.3389/fneur.2023.1242685

3,114 views
4 citations

Methods

Published on 15 Jul 2024

Petal segmentation in CT images based on divide-and-conquer strategy

in Technical Advances in Plant Science

Yuki Naka
Yuzuko Utsumi
Masakazu Iwamura
Hirokazu Tsukaya
Koichi Kise

Frontiers in Plant Science

doi 10.3389/fpls.2024.1389902

2,678 views

Original Research

Published on 13 Mar 2025

3D segmentation of uterine fibroids based on deep supervision and an attention gate

in Cancer Imaging and Image-directed Interventions

ZhiWei Liu
ChengNv Sun
ChengWei Li
FaJin Lv

Frontiers in Oncology

doi 10.3389/fonc.2025.1522399

2,063 views
6 citations

Original Research

Published on 24 Jul 2020

AutoPath: Image-Specific Inference for 3D Segmentation

Dong Sun
Yi Wang
Dong Ni
Tianfu Wang

Frontiers in Neurorobotics

doi 10.3389/fnbot.2020.00049

4,114 views
5 citations

Original Research

Published on 10 Jan 2022

Comparison of Two-Dimensional- and Three-Dimensional-Based U-Net Architectures for Brain Tissue Classification in One-Dimensional Brain CT

Meera Srikrishna
Rolf A. Heckemann
Joana B. Pereira
Giovanni Volpe
Anna Zettergren
Silke Kern
Eric Westman
Ingmar Skoog
Michael Schöll

Frontiers in Computational Neuroscience

doi 10.3389/fncom.2021.785244

11,835 views
20 citations

Review

Published on 29 May 2025

A comprehensive overview of focused ion beam-scanning electron microscopy (FIB-SEM) applications for the evaluation of outer retina

in Molecular and Cellular Pathology

Sanjay Ch
Rayne R. Lim
Shermaine W. Y. Low
Deana G. Grant
Sam Patterson
Aparna Ramasubramanian
Ashish K. Gadicherla
Shyam S. Chaurasia

Frontiers in Cell and Developmental Biology

doi 10.3389/fcell.2025.1586029

4,832 views
1 citation

Original Research

Published on 28 Oct 2022

Automated 3D segmentation of the aorta and pulmonary artery for predicting outcomes after thoracoscopic lobectomy in lung cancer patients

in Thoracic Oncology

Hsin-Ying Lee
Yu-Jung Chung
Hao-Jen Wang
Xu-Heng Chiang
Li-Wei Chen
Yan-Ting Lin
Yi-Chieh Lee
Hsao-Hsun Hsu
Yeun-Chung Chang
Chung-Ming Chen

Frontiers in Oncology

doi 10.3389/fonc.2022.1027036

2,873 views

Original Research

Published on 18 Jan 2023

2.5D and 3D segmentation of brain metastases with deep learning on multinational MRI data

Jon André Ottesen
Darvin Yi
Elizabeth Tong
Michael Iv
Anna Latysheva
Cathrine Saxhaug
Kari Dolven Jacobsen
Åslaug Helland
Kyrre Eeg Emblem
Daniel L. Rubin

Frontiers in Neuroinformatics

doi 10.3389/fninf.2022.1056068

11,096 views
30 citations

Technology Report

Published on 05 Nov 2015

Crowdsourcing the creation of image segmentation algorithms for connectomics

Ignacio Arganda-Carreras
Srinivas C. Turaga
Daniel R. Berger
Dan Cireşan
Alessandro Giusti
Luca M. Gambardella
Jürgen Schmidhuber
Dmitry Laptev
Sarvesh Dwivedi
Joachim M. Buhmann

Frontiers in Neuroanatomy

doi 10.3389/fnana.2015.00142

44,311 views
311 citations

Methods

Published on 23 May 2018

MultiMap: A Tool to Automatically Extract and Analyse Spatial Microscopic Data From Large Stacks of Confocal Microscopy Images

Gherardo Varando
Ruth Benavides-Piccione
Alberto Muñoz
Asta Kastanauskaite
Concha Bielza
Pedro Larrañaga
Javier DeFelipe

Frontiers in Neuroanatomy

doi 10.3389/fnana.2018.00037

7,979 views
5 citations

Original Research

Published on 21 Oct 2021

Three-Dimensional Segmentation and in silico Comparison of Equine Deep Digital Flexor Tendon Pathology in Horses Undergoing Repeated MRI Examination

in Veterinary Imaging

Kimberly D. Trolinger-Meadows
Adam H. Biedrzycki
Hongjia He
Natasha Werpy

Frontiers in Veterinary Science

doi 10.3389/fvets.2021.706046

3,706 views
1 citation

Original Research

Published on 12 Jan 2021

One-Shot Learning With Attention-Guided Segmentation in Cryo-Electron Tomography

in Molecular Diagnostics and Therapeutics

Bo Zhou
Haisu Yu
Xiangrui Zeng
Xiaoyan Yang
Jing Zhang
Min Xu

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2020.613347

5,305 views
22 citations

Original Research

Published on 19 Sep 2024

Three-dimensional secondary reconstruction of mistreated zygomatic fractures using patient specific surgical guides and implants

in Oral and Maxillofacial Surgery

Andrei Krasovsky
Ahmad Hija
Nidal Zeineh
Amir Bilder
Omri Emodi
Adi Rachmiel
Dekel Shilo

Frontiers in Oral Health

doi 10.3389/froh.2024.1464012

2,902 views
1 citation

Original Research

Published on 04 Apr 2023

3D segmentation of plant root systems using spatial pyramid pooling and locally adaptive field-of-view inference

in Technical Advances in Plant Science

Jonas Alle
Roland Gruber
Norbert Wörlein
Norman Uhlmann
Joelle Claußen
Thomas Wittenberg
Stefan Gerth

Frontiers in Plant Science

doi 10.3389/fpls.2023.1120189

4,584 views
6 citations

Original Research

Published on 27 May 2022

Automated 2D, 2.5D, and 3D Segmentation of Coral Reef Pointclouds and Orthoprojections

in Robot Vision and Artificial Perception

Hugh Runyan
Vid Petrovic
Clinton B. Edwards
Nicole Pedersen
Esmeralda Alcantar
Falko Kuester
Stuart A. Sandin

Frontiers in Robotics and AI

doi 10.3389/frobt.2022.884317

6,868 views
15 citations

Technology and Code

Published on 25 Nov 2022

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling

William Silversmith
Aleksandar Zlateski
J. Alexander Bae
Ignacio Tartavull
Nico Kemnitz
Jingpeng Wu
H. Sebastian Seung

Frontiers in Neural Circuits

doi 10.3389/fncir.2022.977700

8,697 views
24 citations

Articles

Automatic segmentation of white matter hyperintensities and correlation analysis for cerebral small vessel disease

Petal segmentation in CT images based on divide-and-conquer strategy

3D segmentation of uterine fibroids based on deep supervision and an attention gate

AutoPath: Image-Specific Inference for 3D Segmentation

Comparison of Two-Dimensional- and Three-Dimensional-Based U-Net Architectures for Brain Tissue Classification in One-Dimensional Brain CT

A comprehensive overview of focused ion beam-scanning electron microscopy (FIB-SEM) applications for the evaluation of outer retina

Automated 3D segmentation of the aorta and pulmonary artery for predicting outcomes after thoracoscopic lobectomy in lung cancer patients

2.5D and 3D segmentation of brain metastases with deep learning on multinational MRI data

Crowdsourcing the creation of image segmentation algorithms for connectomics

MultiMap: A Tool to Automatically Extract and Analyse Spatial Microscopic Data From Large Stacks of Confocal Microscopy Images

Three-Dimensional Segmentation and in silico Comparison of Equine Deep Digital Flexor Tendon Pathology in Horses Undergoing Repeated MRI Examination

One-Shot Learning With Attention-Guided Segmentation in Cryo-Electron Tomography

Three-dimensional secondary reconstruction of mistreated zygomatic fractures using patient specific surgical guides and implants

3D segmentation of plant root systems using spatial pyramid pooling and locally adaptive field-of-view inference

Automated 2D, 2.5D, and 3D Segmentation of Coral Reef Pointclouds and Orthoprojections

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling