Articles

Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach

in Genomic Analysis

• Jan Rothörl
• Maarten A. Brems
• Tim J. Stevens
• Peter Virnau

Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim

• Harilal Parasuram
• Bipin Nair
• Egidio D'Angelo
• Michael Hines
• Giovanni Naldi
• Shyam Diwakar

Computational inference of chemokine-mediated roles for the vagus nerve in modulating intra- and inter-tissue inflammation

in Data and Model Integration

• Ashti M. Shah
• Ruben Zamora
• Derek Barclay
• Jinling Yin
• Fayten El-Dehaibi
• Meghan Addorisio
• Tea Tsaava
• Aisling Tynan
• Kevin Tracey
• Sangeeta S. Chavan

Gradient Matching Methods for Computational Inference in Mechanistic Models for Systems Biology: A Review and Comparative Analysis

in Systems Biology Archive

• Benn Macdonald
• Dirk Husmeier

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets

in Technical Advances in Plant Science

• Keiichi Mochida
• Satoru Koda
• Komaki Inoue
• Ryuei Nishii

Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds

in Plant Systems and Synthetic Biology

• Neelam Redekar
• Guillaume Pilot
• Victor Raboy
• Song Li
• M. A. Saghai Maroof

Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer

in Gastrointestinal Cancers: Colorectal Cancer

• Paige N. Vega
• Avlant Nilsson
• Manu P. Kumar
• Hiroaki Niitsu
• Alan J. Simmons
• James Ro
• Jiawei Wang
• Zhengyi Chen
• Brian A. Joughin
• Wei Li

Improved diagnosis of inflammatory bowel disease and prediction and monitoring of response to anti-TNF alpha treatment based on measurement of signal transduction pathway activity

in Inflammation Pharmacology

• Wilbert Bouwman
• Wim Verhaegh
• Anja van de Stolpe