Articles

GeneCloudOmics: A Data Analytic Cloud Platform for High-Throughput Gene Expression Analysis

in Data Visualization

• Mohamed Helmy
• Rahul Agrawal
• Javed Ali
• Mohamed Soudy
• Thuy Tien Bui
• Kumar Selvarajoo

Assessment of a Highly Multiplexed RNA Sequencing Platform and Comparison to Existing High-Throughput Gene Expression Profiling Techniques

in Computational Genomics

• Eric Reed
• Elizabeth Moses
• Xiaohui Xiao
• Gang Liu
• Joshua Campbell
• Catalina Perdomo
• Stefano Monti

Cortical type: a conceptual tool for meaningful biological interpretation of high-throughput gene expression data in the human cerebral cortex

• Ariadna Sancha-Velasco
• Alicia Uceda-Heras
• Miguel Ángel García-Cabezas

BioVDB: biological vector database for high-throughput gene expression meta-analysis

in Medicine and Public Health

• Michał J. Winnicki
• Chase A. Brown
• Hunter L. Porter
• Cory B. Giles
• Jonathan D. Wren

Gene Set Analysis: Challenges, Opportunities, and Future Research

in Computational Genomics

• Farhad Maleki
• Katie Ovens
• Daniel J. Hogan
• Anthony J. Kusalik

Application of perturbation gene expression profiles in drug discovery—From mechanism of action to quantitative modelling

in Translational Systems Biology and In Silico Trials

• Bence Szalai
• Dániel V. Veres

Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution

in Computational Genomics

• Katie Ovens
• B. Frank Eames
• Ian McQuillan

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

in Predictive Toxicology and Exposomics

• Pierre R. Bushel
• Richard S. Paules
• Scott S. Auerbach

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets

in Technical Advances in Plant Science

• Keiichi Mochida
• Satoru Koda
• Komaki Inoue
• Ryuei Nishii

A comprehensive survey on computational learning methods for analysis of gene expression data

in Molecular Diagnostics and Therapeutics

• Nikita Bhandari
• Rahee Walambe
• Ketan Kotecha
• Satyajeet P. Khare

HNCDB: An Integrated Gene and Drug Database for Head and Neck Cancer

in Cancer Genetics

• Qingbin Zhang
• Xingyang Li
• Xuan Su
• Hongwan Zhang
• Hanbing Wang
• Sanjun Yin
• Xiaoqing Pei
• Ankui Yang
• Zhixiang Zuo

A Bootstrap Based Measure Robust to the Choice of Normalization Methods for Detecting Rhythmic Features in High Dimensional Data

in Computational Genomics

• Yolanda Larriba
• Cristina Rueda
• Miguel A. Fernández
• Shyamal D. Peddada

Inferring Differential Networks by Integrating Gene Expression Data With Additional Knowledge

in Computational Genomics

• Chen Liu
• Dehan Cai
• WuCha Zeng
• Yun Huang

Investigation of chicken housekeeping genes using next-generation sequencing data

in Livestock Genomics

• Karim Hasanpur
• Sevda Hosseinzadeh
• Atiye Mirzaaghayi
• Sadegh Alijani

Extra virgin olive oil extract rich in secoiridoids induces an anti-inflammatory profile in peripheral blood mononuclear cells from obese children

in Food Chemistry

• Stefania De Santis
• Pasquale Crupi
• Laura Piacente
• Anna Mestice
• Nicola Antonio Colabufo
• Loredana Amodio
• Paola Pontrelli
• Loreto Gesualdo
• Antonio Moschetta
• Maria Lisa Clodoveo

Rat embryonic stem cell-based in vitro testing platform for mammalian embryo toxicology at pre- and post-implantation stages

in Developmental and Reproductive Toxicology

• Corinne Quadalti
• Marzia Moretti
• Fabio Ferrazzi
• Laura Calzà
• Luciana Giardino
• Vito Antonio Baldassarro