Metagenomic Binning | List of Frontiers open access articles

Original Research

Published on 07 Feb 2017

Metagenomic Binning Recovers a Transcriptionally Active Gammaproteobacterium Linking Methanotrophy to Partial Denitrification in an Anoxic Oxygen Minimum Zone

in Marine Biogeochemistry

Cory C. Padilla
Anthony D. Bertagnolli
Laura A. Bristow
Neha Sarode
Jennifer B. Glass
Bo Thamdrup
Frank J. Stewart

Frontiers in Marine Science

doi 10.3389/fmars.2017.00023

11,775 views
56 citations

Original Research

Published on 06 Dec 2019

Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol

in Systems Microbiology

Zhou Li
Qiuming Yao
Xuan Guo
Alexander Crits-Christoph
Melanie A. Mayes
William Judson Hervey IV
Sarah L. Lebeis
Jillian F. Banfield
Gregory B. Hurst
Robert L. Hettich

Frontiers in Microbiology

doi 10.3389/fmicb.2019.02706

10,933 views
40 citations

Original Research

Published on 16 Feb 2021

A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities

in Food Microbiology

Marko Verce
Jorn Schoonejans
Carlos Hernandez Aguirre
Ramón Molina-Bravo
Luc De Vuyst
Stefan Weckx

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641185

11,688 views
54 citations

Original Research

Published on 23 Dec 2015

Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation

in Microbial Physiology and Metabolism

Connor T. Skennerton
Lewis M. Ward
Alice Michel
Kyle Metcalfe
Chanel Valiente
Sean Mullin
Ken Y. Chan
Viviana Gradinaru
Victoria J. Orphan

Frontiers in Microbiology

doi 10.3389/fmicb.2015.01425

10,820 views
41 citations

Technology and Code

Published on 19 Sep 2019

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples

in Computational Genomics

Alice Chiodi
Francesco Comandatore
Davide Sassera
Giulio Petroni
Claudio Bandi
Matteo Brilli

Frontiers in Genetics

doi 10.3389/fgene.2019.00853

5,478 views

Original Research

Published on 13 Oct 2025

Investigation of the role of sulfide oxidation in the gill-associated microbiota of freshwater mussel Limnoperna fortunei

in Microbial Symbioses

Yu Peng
Duanyi Huang
Juechun Li
Xiaoxu Sun
Qifan Zhang
Ruijian Zhang
Rui Yang
Baoqin Li
Tianle Kong
Zhiming Xiong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1671425

1,909 views

Original Research

Published on 22 Feb 2022

Characteristics of Antibiotic Resistance Genes and Antibiotic-Resistant Bacteria in Full-Scale Drinking Water Treatment System Using Metagenomics and Culturing

in Food Microbiology

Qihui Gu
Ming Sun
Tao Lin
Youxiong Zhang
Xianhu Wei
Shi Wu
Shuhong Zhang
Rui Pang
Juan Wang
Yu Ding

Frontiers in Microbiology

doi 10.3389/fmicb.2021.798442

10,780 views
38 citations

Original Research

Published on 23 Mar 2022

Effects of Short-Chain Fatty Acid Modulation on Potentially Diarrhea-Causing Pathogens in Yaks Through Metagenomic Sequencing

in Microbiome in Health and Disease

Kun Li
Zhibo Zeng
Juanjuan Liu
Lulu Pei
Yaping Wang
Aoyun Li
Muhammad Fakhar-e-Alam Kulyar
Muhammad Shahzad
Khalid Mehmood
Jiakui Li

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2022.805481

7,081 views
22 citations

Articles

Metagenomic Binning Recovers a Transcriptionally Active Gammaproteobacterium Linking Methanotrophy to Partial Denitrification in an Anoxic Oxygen Minimum Zone

Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol

A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities

Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples

Investigation of the role of sulfide oxidation in the gill-associated microbiota of freshwater mussel Limnoperna fortunei

Characteristics of Antibiotic Resistance Genes and Antibiotic-Resistant Bacteria in Full-Scale Drinking Water Treatment System Using Metagenomics and Culturing

Effects of Short-Chain Fatty Acid Modulation on Potentially Diarrhea-Causing Pathogens in Yaks Through Metagenomic Sequencing