Microbiological Methods | List of Frontiers open access articles

Original Research

Published on 13 Jun 2016

Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome

in Infectious Agents and Disease

Steven J. Schiff
Julius Kiwanuka
Gina Riggio
Lan Nguyen
Kevin Mu
Emily Sproul
Joel Bazira
Juliet Mwanga-Amumpaire
Dickson Tumusiime
Eunice Nyesigire

Frontiers in Medicine

doi 10.3389/fmed.2016.00022

36,234 views
15 citations

Original Research

Published on 16 Nov 2021

Bacterial Characteristics of Intestinal Tissues From Patients With Crohn’s Disease

in Clinical and Diagnostic Microbiology and Immunology

Desen Sun
Xiaolong Ge
Shasha Tang
Yaxin Liu
Jun Sun
Yuping Zhou
Liang Luo
Zhengping Xu
Wei Zhou
Jinghao Sheng

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2021.711680

4,764 views
8 citations

Brief Research Report

Published on 18 Aug 2021

Antibiotic Resistance Pattern of Extended Spectrum Beta Lactamase Producing Escherichia coli Isolated From Patients With Urinary Tract Infection in Morocco

in Clinical and Diagnostic Microbiology and Immunology

Mohamed Kettani Halabi
Fatima Azzahra Lahlou
Idrissa Diawara
Younes El Adouzi
Rabiaa Marnaoui
Rachid Benmessaoud
Imane Smyej

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2021.720701

17,272 views
45 citations

Original Research

Published on 18 Dec 2025

Micromycete diversity and pathogenic potential in soils of long-term cultivated apple orchards

in Terrestrial Microbiology

O. Demyanyuk
V. Oliferchuk
R. Yakovenko
D. Synenko
M. N. Coelho Pinheiro
L. Symochko

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1673468

2,047 views

Original Research

Published on 05 Jan 2026

Description on the prevalence of Proteus mirabilis through an integrated sampling framework for health, food, and environment in Northeast India and an integrative review with reference to one health context

in Food Microbiology

Goutam Chowdhury
Tapan Majumdar
Dilem Modi
Karma G. Dolma
Suranjana Chaliha Hazarika
Pallab Sarmah
Samaresh Das
Asish K. Mukhopadhyay
Anup Kumar Ojha
Madhuchhanda Das

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1708233

1,117 views

Original Research

Published on 05 Feb 2021

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events

in Food Microbiology

Benjamin Zwirzitz
Stefanie U. Wetzels
Emmanuel D. Dixon
Svenja Fleischmann
Evelyne Selberherr
Sarah Thalguter
Narciso M. Quijada
Monika Dzieciol
Martin Wagner
Beatrix Stessl

Frontiers in Microbiology

doi 10.3389/fmicb.2021.632935

11,050 views
62 citations

Original Research

Published on 31 Jul 2017

Comparison of the Microbiological Quality and Safety between Conventional and Organic Vegetables Sold in Malaysia

in Food Microbiology

Chee-Hao Kuan
Yaya Rukayadi
Siti H. Ahmad
Che W. J. Wan Mohamed Radzi
Tze-Young Thung
Jayasekara M. K. J. K. Premarathne
Wei-San Chang
Yuet-Ying Loo
Chia-Wanq Tan
Othman B. Ramzi

Frontiers in Microbiology

doi 10.3389/fmicb.2017.01433

16,652 views
37 citations

Original Research

Published on 04 Nov 2022

Antibiotic-resistant Campylobacter coli and Campylobacter jejuni in commercial and smallholder farm animals in the Asante Akim North Municipality of Ghana

in Food Microbiology

Ellis Kobina Paintsil
Linda Aurelia Ofori
Charity Wiafe Akenten
Andreas E. Zautner
Joyce Mbwana
Anna Jaeger
Maike Lamshöft
Jürgen May
Kwasi Obiri-Danso
Richard Odame Philipps

Frontiers in Microbiology

doi 10.3389/fmicb.2022.983047

4,303 views
10 citations

Original Research

Published on 24 Feb 2023

Real-time PCR has advantages over culture-based methods in identifying major airway bacterial pathogens in chronic obstructive pulmonary disease: Results from three clinical studies in Europe and North America

in Infectious Agents and Disease

Sonia Schoonbroodt
Jean-Laurent Ichanté
Sophie Boffé
Nathalie Devos
Jeanne-Marie Devaster
Laura Taddei
Simona Rondini
Ashwani Kumar Arora
Thierry Pascal
Ludovic Malvaux

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1098133

8,124 views
20 citations

Original Research

Published on 20 Jan 2025

Identification of serotype O3b and high-risk clone ST37 of Klebsiella pneumoniae revealed by comparative genomic analysis

in Extra-intestinal Microbiome

Sivaraman Gopalan Krishnan
Sudha Sajeev
Visnuvinayagam Sivam
Raja Swaminathan T.
Rakshit Ojha
Bibek Ranjan Shome
Mark Holmes
Thanigaivel Sundaram
Ramesh M. D.
Saranya Vinayagam

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2024.1517125

3,683 views
2 citations

Original Research

Published on 15 Aug 2013

The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults

in Microbiome in Health and Disease

Debbie Ann Lewis
Richard Brown
Jon Williams
Paul White
Susan Kim Jacobson
Julian Marchesi
Marcus John Drake

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2013.00041

41,600 views
368 citations

Articles

Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome

Bacterial Characteristics of Intestinal Tissues From Patients With Crohn’s Disease

Antibiotic Resistance Pattern of Extended Spectrum Beta Lactamase Producing Escherichia coli Isolated From Patients With Urinary Tract Infection in Morocco

Micromycete diversity and pathogenic potential in soils of long-term cultivated apple orchards

Description on the prevalence of Proteus mirabilis through an integrated sampling framework for health, food, and environment in Northeast India and an integrative review with reference to one health context

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events

Comparison of the Microbiological Quality and Safety between Conventional and Organic Vegetables Sold in Malaysia

Antibiotic-resistant Campylobacter coli and Campylobacter jejuni in commercial and smallholder farm animals in the Asante Akim North Municipality of Ghana

Real-time PCR has advantages over culture-based methods in identifying major airway bacterial pathogens in chronic obstructive pulmonary disease: Results from three clinical studies in Europe and North America

Identification of serotype O3b and high-risk clone ST37 of Klebsiella pneumoniae revealed by comparative genomic analysis

The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults