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6 articles related to "Network Reconstructions"

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Articles

Mini Review

Published on 06 Aug 2012

Integration of expression data in genome-scale metabolic network reconstructions

in Computational Physiology and Medicine

Anna S. Blazier
Jason A. Papin

Frontiers in Physiology

doi 10.3389/fphys.2012.00299

39,289 views
255 citations

Perspective

Published on 24 Jul 2024

Transporter annotations are holding up progress in metabolic modeling

in Data and Model Integration

John Casey
Brian Bennion
Patrik D’haeseleer
Jeffrey Kimbrel
Gianna Marschmann
Ali Navid

Frontiers in Systems Biology

doi 10.3389/fsysb.2024.1394084

4,095 views
10 citations

Original Research

Published on 26 Nov 2020

ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species

in Metabolomics

Eileen Marie Hanna
Xiaokang Zhang
Marta Eide
Shirin Fallahi
Tomasz Furmanek
Fekadu Yadetie
Daniel Craig Zielinski
Anders Goksøyr
Inge Jonassen

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2020.591406

5,289 views
17 citations

Review

Published on 11 Mar 2014

Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease

in Computational Physiology and Medicine

Swagatika Sahoo
Maike Kathrin Aurich
Jon Johannes Jonsson
Ines Thiele

Frontiers in Physiology

doi 10.3389/fphys.2014.00091

34,045 views
97 citations

Original Research

Published on 14 Nov 2018

Modeling Meets Metabolomics—The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans

in Metabolomics

Michael Witting
Janna Hastings
Nicolas Rodriguez
Chintan J. Joshi
Jake P. N. Hattwell
Paul R. Ebert
Michel van Weeghel
Arwen W. Gao
Michael J. O. Wakelam
Riekelt H. Houtkooper

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2018.00096

12,898 views
38 citations

Original Research

Published on 14 Sep 2017

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling

in Fungi and Their Interactions

Sergio Triana
Hans de Cock
Robin A. Ohm
Giovanna Danies
Han A. B. Wösten
Silvia Restrepo
Andrés F. González Barrios
Adriana Celis

Frontiers in Microbiology

doi 10.3389/fmicb.2017.01772

15,323 views
44 citations