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ORIGINAL RESEARCH article

Front. Genet.
Sec. Computational Genomics
Volume 15 - 2024 | doi: 10.3389/fgene.2024.1344960

Chromosome Classification Involving Multi-scale Feature Fusion Guided by Dual-attention Mechanisms

Provisionally accepted
Xin Wang Xin Wang 1Gui R. Xie Gui R. Xie 2*Wen Wang Wen Wang 1*Jiao Y. Zhang Jiao Y. Zhang 3*Guang Y. Cong Guang Y. Cong 4*Han Xiang Han Xiang 5*Yin Y. Zeng Yin Y. Zeng 5*Lin X. Fang Lin X. Fang 5*Xin S. Li Xin S. Li 1*
  • 1 Dongguan First Hospital affiliated to Guangdong Medical University, Dongguan, China
  • 2 The Centre for Medical Genetics and Key Laboratory of Maternal and Child Metabolic Genetics, Dongguan Maternal and Child Health Hospital, Dongguan, China
  • 3 School of Basic Medicine, Guangdong Medical University, Dongguan, Guangdong Province, China
  • 4 Clinical Laboratory, The First Affiliated Hospital of Guangdong Pharmaceutical University, Guangzhou, China
  • 5 School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China

The final, formatted version of the article will be published soon.

    Chromosome classification plays a crucial role in identifying chromosomal abnormalities and is considered a challenging and significant task in karyotype analysis. Although deep learning techniques have shown promising results in chromosome classification tasks, their reliance on stacked convolutional blocks for extracting low-resolution high-level features may limit their ability to utilize high-resolution low-level semantic features for accurate characterization. To overcome this limitation and achieve precise chromosome classification, we propose a novel architecture called Multi-Scale Dual-Attention Network (MSDA-Net). MSDA-Net integrates a multi-scale feature extraction module and a multi-scale fusion module. The multi-scale feature extraction module includes several nested dense dual-attention modules, which not only capture feature information at different scales but also identify more discriminative features in terms of position and spatial dimensions. Subsequently, the multi-scale fusion module combines the acquired feature representations to predict chromosome image into one of the classes. In the chromosomal classification task, when evaluated on a large dataset of 24 types of images containing normal and abnormal single chromosomes that we created, our method demonstrates impressive accuracy, precision, recall, and F1-score of 99.03%, with good classification performance for all 24 types of chromosomes. Furthermore, extensive comparative experiments validate the superiority of our method over the current state-of-the-art convolutional neural network algorithms and can achieve the best classification results with fewer parameters and shorter training time. This study has significant clinical implications for the identification of diseases associated with abnormal chromosomes.

    Keywords: Chromosome classification, Densenet, Daul attention mechanism, Karyotyping, Deep learning,Multi-scale feature fusion

    Received: 28 Nov 2023; Accepted: 21 May 2024.

    Copyright: © 2024 Wang, Xie, Wang, Zhang, Cong, Xiang, Zeng, Fang and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Gui R. Xie, The Centre for Medical Genetics and Key Laboratory of Maternal and Child Metabolic Genetics, Dongguan Maternal and Child Health Hospital, Dongguan, China
    Wen Wang, Dongguan First Hospital affiliated to Guangdong Medical University, Dongguan, China
    Jiao Y. Zhang, School of Basic Medicine, Guangdong Medical University, Dongguan, 524023, Guangdong Province, China
    Guang Y. Cong, Clinical Laboratory, The First Affiliated Hospital of Guangdong Pharmaceutical University, Guangzhou, China
    Han Xiang, School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, 511436, China
    Yin Y. Zeng, School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, 511436, China
    Lin X. Fang, School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, 511436, China
    Xin S. Li, Dongguan First Hospital affiliated to Guangdong Medical University, Dongguan, China

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