Biocomputing | List of Frontiers open access articles

Perspective

Published on 11 Mar 2019

High-Performance Biocomputing in Synthetic Biology–Integrated Transcriptional and Metabolic Circuits

in Synthetic Biology

Angel Goñi-Moreno
Pablo I. Nikel

Frontiers in Bioengineering and Biotechnology

doi 10.3389/fbioe.2019.00040

27,774 views
47 citations

Perspective

Published on 06 Nov 2014

The Essential Component in DNA-Based Information Storage System: Robust Error-Tolerating Module

in Synthetic Biology

Aldrin Kay-Yuen Yim
Allen Chi-Shing Yu
Jing-Woei Li
Ada In-Chun Wong
Jacky F. C. Loo
King Ming Chan
S. K. Kong
Kevin Y. Yip
Ting-Fung Chan

Frontiers in Bioengineering and Biotechnology

doi 10.3389/fbioe.2014.00049

8,779 views
24 citations

Original Research

Published on 28 Apr 2025

Engineered biological neuronal networks as basic logic operators

Joël Küchler
Katarina Vulić
Haotian Yao
Christian Valmaggia
Stephan J. Ihle
Sean Weaver
János Vörös

Frontiers in Computational Neuroscience

doi 10.3389/fncom.2025.1559936

1,282 views

Original Research

Published on 20 Mar 2023

Evolutionary approach to construct robust codes for DNA-based data storage

in Computational Genomics

Abdur Rasool
Qingshan Jiang
Yang Wang
Xiaoluo Huang
Qiang Qu
Junbiao Dai

Frontiers in Genetics

doi 10.3389/fgene.2023.1158337

3,212 views
11 citations

Frontiers in Science Lead Article

Published on 28 Feb 2023

Organoid intelligence (OI): the new frontier in biocomputing and intelligence-in-a-dish

Lena Smirnova
Brian S. Caffo
David H. Gracias
Qi Huang
Itzy E. Morales Pantoja
Bohao Tang
Donald J. Zack
Cynthia A. Berlinicke
J. Lomax Boyd
Timothy D. Harris

Frontiers in Science

doi 10.3389/fsci.2023.1017235

281,774 views
143 citations

Original Research

Published on 16 Sep 2022

Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping

in Protein Biochemistry for Basic and Applied Sciences

Giulia Babbi
Castrense Savojardo
Davide Baldazzi
Pier Luigi Martelli
Rita Casadio

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.966927

2,590 views
1 citation

Original Research

Published on 07 May 2021

Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes

in Biological Modeling and Simulation

Castrense Savojardo
Giulia Babbi
Pier Luigi Martelli
Rita Casadio

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.617016

3,648 views
8 citations

Original Research

Published on 02 Nov 2023

S-Net: a multiple cross aggregation convolutional architecture for automatic segmentation of small/thin structures for cardiovascular applications

in Computational Physiology and Medicine

Nan Mu
Zonghan Lyu
Mostafa Rezaeitaleshmahalleh
Cassie Bonifas
Jordan Gosnell
Marcus Haw
Joseph Vettukattil
Jingfeng Jiang

Frontiers in Physiology

doi 10.3389/fphys.2023.1209659

1,838 views
4 citations

Original Research

Published on 31 Jan 2024

The coherence between PSMC6 and α-ring in the 26S proteasome is associated with Alzheimer’s disease

in Brain Disease Mechanisms

Jing Xiong
Xinping Pang
Xianghu Song
Lin Yang
Chaoyang Pang

Frontiers in Molecular Neuroscience

doi 10.3389/fnmol.2023.1330853

3,418 views
5 citations

Original Research

Published on 07 Jan 2021

Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences

in Structural Biology

Castrense Savojardo
Matteo Manfredi
Pier Luigi Martelli
Rita Casadio

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2020.626363

19,282 views
113 citations

Original Research

Published on 17 Jul 2020

Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus)

in Molecular Bacterial Pathogenesis

Hasan C. Tekedar
Mark A. Arick
Chuan-Yu Hsu
Adam Thrash
Jochen Blom
Mark L. Lawrence
Hossam Abdelhamed

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2020.00348

8,646 views
42 citations

Perspective

Published on 06 Apr 2021

Convergence of Blockchain, Autonomous Agents, and Knowledge Graph to Share Electronic Health Records

in Blockchain for Good

Yao Yao
Meghana Kshirsagar
Gauri Vaidya
Jens Ducrée
Conor Ryan

Frontiers in Blockchain

doi 10.3389/fbloc.2021.661238

7,303 views
15 citations

Original Research

Published on 22 Aug 2022

Transcriptome analysis of the 2,4-dichlorophenoxyacetic acid (2,4-D)-tolerant cotton chromosome substitution line CS-B15sh and its susceptible parental lines G. hirsutum L. cv. Texas Marker-1 and G. barbadense L. cv. Pima 379

in Plant Breeding

Loida M. Perez
Ramil Mauleon
Mark A. Arick
Zenaida V. Magbanua
Daniel G. Peterson
Jeffrey F. D. Dean
Te Ming Tseng

Frontiers in Plant Science

doi 10.3389/fpls.2022.910369

3,489 views
9 citations

Original Research

Published on 14 Feb 2023

RNA sequencing least shrew (Cryptotis parva) brainstem and gut transcripts following administration of a selective substance P neurokinin NK1 receptor agonist and antagonist expands genomics resources for emesis research

in RNA

Kristopher J. L. Irizarry
Weixia Zhong
Yina Sun
Brent A. Kronmiller
Nissar A. Darmani

Frontiers in Genetics

doi 10.3389/fgene.2023.975087

2,693 views
2 citations

Original Research

Published on 02 Feb 2017

Distinctive Nuclear Localization Signals in the Oomycete Phytophthora sojae

in Plant Pathogen Interactions

Yufeng Fang
Hyo Sang Jang
Gregory W. Watson
Dulani P. Wellappili
Brett M. Tyler

Frontiers in Microbiology

doi 10.3389/fmicb.2017.00010

12,250 views
19 citations

Original Research

Published on 04 Jul 2018

Single-Cell Tracking of A549 Lung Cancer Cells Exposed to a Marine Toxin Reveals Correlations in Pedigree Tree Profiles

in Pharmacology of Anti-Cancer Drugs

Mónica Suárez Korsnes
Reinert Korsnes

Frontiers in Oncology

doi 10.3389/fonc.2018.00260

8,942 views
13 citations

Articles

High-Performance Biocomputing in Synthetic Biology–Integrated Transcriptional and Metabolic Circuits

The Essential Component in DNA-Based Information Storage System: Robust Error-Tolerating Module

Engineered biological neuronal networks as basic logic operators

Evolutionary approach to construct robust codes for DNA-based data storage

Organoid intelligence (OI): the new frontier in biocomputing and intelligence-in-a-dish

Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping

Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes

S-Net: a multiple cross aggregation convolutional architecture for automatic segmentation of small/thin structures for cardiovascular applications

The coherence between PSMC6 and α-ring in the 26S proteasome is associated with Alzheimer’s disease

Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences

Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus)

Convergence of Blockchain, Autonomous Agents, and Knowledge Graph to Share Electronic Health Records

Transcriptome analysis of the 2,4-dichlorophenoxyacetic acid (2,4-D)-tolerant cotton chromosome substitution line CS-B15sh and its susceptible parental lines G. hirsutum L. cv. Texas Marker-1 and G. barbadense L. cv. Pima 379

RNA sequencing least shrew (Cryptotis parva) brainstem and gut transcripts following administration of a selective substance P neurokinin NK1 receptor agonist and antagonist expands genomics resources for emesis research

Distinctive Nuclear Localization Signals in the Oomycete Phytophthora sojae

Single-Cell Tracking of A549 Lung Cancer Cells Exposed to a Marine Toxin Reveals Correlations in Pedigree Tree Profiles