Conformational Variability | List of Frontiers open access articles

Original Research

Published on 19 May 2021

HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes

in Biological Modeling and Simulation

Mohamad Harastani
Mikhail Eltsov
Amélie Leforestier
Slavica Jonic

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.663121

6,506 views
48 citations

Original Research

Published on 03 Feb 2021

Computational Ways to Enhance Protein Inhibitor Design

in Biological Modeling and Simulation

Robert L. Jernigan
Kannan Sankar
Kejue Jia
Eshel Faraggi
Andrzej Kloczkowski

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2020.607323

8,176 views
2 citations

Original Research

Published on 06 Jun 2022

Structure-Based Modulation of the Ligand Sensitivity of a Tomato Dimeric Abscisic Acid Receptor Through a Glu to Asp Mutation in the Latch Loop

in Plant Biophysics and Modeling

Lourdes Infantes
Maria Rivera-Moreno
Miguel Daniel-Mozo
Juan Luis Benavente
Javier Ocaña-Cuesta
Alberto Coego
Jorge Lozano-Juste
Pedro L. Rodriguez
Armando Albert

Frontiers in Plant Science

doi 10.3389/fpls.2022.884029

4,422 views
10 citations

Opinion

Published on 05 Apr 2021

Molecular Dynamics to Predict Cryo-EM: Capturing Transitions and Short-Lived Conformational States of Biomolecules

in Biological Modeling and Simulation

Łukasz Nierzwicki
Giulia Palermo

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.641208

10,322 views
28 citations

Original Research

Published on 02 May 2022

Comparative Structural Dynamics of Isoforms of Helicobacter pylori Adhesin BabA Bound to Lewis b Hexasaccharide via Multiple Replica Molecular Dynamics Simulations

in Biological Modeling and Simulation

Rajarshi Roy
Nisha Amarnath Jonniya
Md Fulbabu Sk
Parimal Kar

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.852895

3,973 views
7 citations

Original Research

Published on 11 Apr 2022

Computational Investigation of Bending Properties of RNA AUUCU, CCUG, CAG, and CUG Repeat Expansions Associated With Neuromuscular Disorders

in Biological Modeling and Simulation

Amirhossein Taghavi
Ilyas Yildirim

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.830161

4,942 views
3 citations

Articles

HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes

Computational Ways to Enhance Protein Inhibitor Design

Structure-Based Modulation of the Ligand Sensitivity of a Tomato Dimeric Abscisic Acid Receptor Through a Glu to Asp Mutation in the Latch Loop

Molecular Dynamics to Predict Cryo-EM: Capturing Transitions and Short-Lived Conformational States of Biomolecules

Comparative Structural Dynamics of Isoforms of Helicobacter pylori Adhesin BabA Bound to Lewis b Hexasaccharide via Multiple Replica Molecular Dynamics Simulations

Computational Investigation of Bending Properties of RNA AUUCU, CCUG, CAG, and CUG Repeat Expansions Associated With Neuromuscular Disorders