Articles

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System

• Jonathan Passerat-Palmbach
• Romain Reuillon
• Mathieu Leclaire
• Antonios Makropoulos
• Emma C. Robinson
• Sarah Parisot
• Daniel Rueckert

Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2

in Genomic Analysis

• Attayeb Mohsen
• Yi-An Chen
• Rodolfo S. Allendes Osorio
• Chihiro Higuchi
• Kenji Mizuguchi

Automated cleaning and pre-processing of immunoglobulin gene sequences from high-throughput sequencing

in B Cell Biology

• Miri Michaeli
• Hila Noga
• Hilla Tabibian-Keissar
• Iris Barshack
• Ramit Mehr

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

• Werner Van Geit
• Michael Gevaert
• Giuseppe Chindemi
• Christian Rössert
• Jean-Denis Courcol
• Eilif B. Muller
• Felix Schürmann
• Idan Segev
• Henry Markram

Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model

in Data Visualization

• Maxime Maria
• Valentin Guillaume
• Simon Guionnière
• Nicolas Dacquay
• Cyprien Plateau–Holleville
• Vincent Larroque
• Jean Lardé
• Yassine Naimi
• Jean-Philip Piquemal
• Guillaume Levieux

Combining globally search for a regular expression and print matching lines with bibliographic monitoring of genomic database improves diagnosis

in Genetics of Common and Rare Diseases

• Frédéric Tran Mau-Them
• Alexis Overs
• Ange-Line Bruel
• Romain Duquet
• Mylene Thareau
• Anne-Sophie Denommé-Pichon
• Antonio Vitobello
• Arthur Sorlin
• Hana Safraou
• Sophie Nambot

A Unified and Comprehensible View of Parametric and Kernel Methods for Genomic Prediction with Application to Rice

in Statistical Genetics and Methodology

• Laval Jacquin
• Tuong-Vi Cao
• Nourollah Ahmadi

Unix Philosophy and the Real World: Control Software for Humanoid Robots

in Humanoid Robotics

• Neil T. Dantam
• Kim Bøndergaard
• Mattias A. Johansson
• Tobias Furuholm
• Lydia E. Kavraki

StatFaRmer: cultivating insights with an advanced R shiny dashboard for digital phenotyping data analysis

in Plant Bioinformatics

• Daniil S. Ulyanov
• Alana A. Ulyanova
• Dmitry Y. Litvinov
• Alina A. Kocheshkova
• Alexandra Yu. Kroupina
• Nadejda M. Syedina
• Viktoria S. Voronezhskaya
• Andrey V. Vasilyev
• Gennady I. Karlov
• Mikhail G. Divashuk

Topology-Inspired Method Recovers Obfuscated Term Information From Induced Software Call-Stacks

in Mathematics of Computation and Data Science

• Kelly Maggs
• Vanessa Robins

RTHybrid: A Standardized and Open-Source Real-Time Software Model Library for Experimental Neuroscience

• Rodrigo Amaducci
• Manuel Reyes-Sanchez
• Irene Elices
• Francisco B. Rodriguez
• Pablo Varona

OpenCOR: a modular and interoperable approach to computational biology

in Computational Physiology and Medicine

• Alan Garny
• Peter J. Hunter

A non-intrusive fine-grained load identification method based on three-dimensional voltage–current trajectories

in Smart Grids

• Haihong Bian
• Zhiyuan Zhang

DataViewer3D: An open-source, cross-platform multi-modal neuroimaging data visualization tool

• Andre D Gouws
• Will Woods
• Rebecca E Millman
• Antony B Morland
• Gary G R Green

Predicting Protein Therapeutic Candidates for Bovine Babesiosis Using Secondary Structure Properties and Machine Learning

in Computational Genomics

• Stephen J. Goodswen
• Paul J. Kennedy
• John T. Ellis

GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes

in Evolutionary and Genomic Microbiology

• Eric Altermann
• Jingli Lu
• Alan McCulloch