Abstract
The striatum as part of the basal ganglia is central to both motor, and cognitive functions. Here, we propose a large-scale biophysical network for this part of the brain, using modified Hodgkin-Huxley dynamics to model neurons, and a connectivity informed by a detailed human atlas. The model shows different spatio-temporal activity patterns corresponding to lower (presumably normal) and increased cortico-striatal activation (as found in, e.g., obsessive-compulsive disorder), depending on the intensity of the cortical inputs. By applying equation-free methods, we are able to perform a macroscopic network analysis directly from microscale simulations. We identify the mean synaptic activity as the macroscopic variable of the system, which shows similarity with local field potentials. The equation-free approach results in a numerical bifurcation and stability analysis of the macroscopic dynamics of the striatal network. The different macroscopic states can be assigned to normal/healthy and pathological conditions, as known from neurological disorders. Finally, guided by the equation-free bifurcation analysis, we propose a therapeutic close loop control scheme for the striatal network.
1 Introduction and context
Complex dynamical systems of interacting units appear in nature across several disciplines. Examples of these systems are networks of coupled neurons in the brain, epidemiological networks of interacting individuals during a virus spreading, and social or economic networks of human action and perception. A common characteristic of these networks is the existence of well-defined rules for each individual entity, the so-called microscopic description, while the emergent network behaviour evolves on a different level, the macroscopic scale.
The macroscopic description, say, in the form of ordinary or partial differential equations, governs the time evolution of few macroscopic variables, which are often given by low order statistics such as densities or correlation functions. It is however very challenging, if possible at all, to derive such a macroscopic description from a microscopic model, without making assumptions about the connectivity of the system, see, e.g., (; Montbrió et al., 2015). In neuroscience, and specifically for brain networks, the microscopic description is based on the electrochemical activity of individual cells which is frequently modelled by Hodgkin-Huxley equations (; Terman et al., 2002; Spiliotis et al., 2022b). These cell-neurons interact through synaptic connections, and the mathematical description results in large systems of coupled nonlinear differential equations. The heterogeneous connectivity, the nonlinear behaviour of each cell, and the stochastic environment are factors which increase the complexity of the emergent network behaviour. Existence of multiple stationary states, sustained oscillations (; Spiliotis and Siettos, 2011; ), as well as travelling waves and spatio-temporal chaos (; ; Palkar et al., 2023), are signatures of the rich nonlinear behaviour of neural networks at the macroscopic level (; Spiliotis and Siettos, 2011; ; ; ; Siettos and Starke, 2016; Spiliotis et al., 2022b).
In previous studies (Spiliotis et al., 2022a; Spiliotis et al., 2022b; Spiliotis et al., 2024) we developed a large-scale computational model of the basal ganglia network and thalamus to describe movement disorders and treatment effects of deep brain stimulation. The model of this complex network covers three areas of the basal ganglia region: the subthalamic nucleus, the globus pallidus, both pars externa and pars interna, and the thalamus and motor and pre-motor cortex. Macroscopic analysis of the network dynamics allowed us to study the differences in neural activation patterns that will emerge within the brain’s structural network when simulating different medical conditions. For example, our computational model suggests that spatio-temporal activity in the basal ganglia network shows travelling wave solutions with more varying structures in the normal state as compared to the Parkinsonian state, see (Spiliotis et al., 2022b). In addition, the macroscopic analysis yields optimal frequency ranges for deep brain stimulation as well as optimal positions for the electrodes (Spiliotis et al., 2022a).
In this work, we focus on the striatum, an essential intermediate area of the brain that connects cortical to deep brain regions. The striatum belongs to the basal ganglia area and orchestrates activities for controlling movement, decision-making, choosing actions, and those maximising reward and other psychological behaviours (; ; ). The striatum integrates cortical signals to create motor activities based on experience and forthcoming selections. The significance of striatum functionality is also accentuated by its involvement in a vast number of neurological diseases ranging from Parkinson’s disease, Huntington’s disease, and dystonia to psychological disorders such as obsessive-compulsive disorder, depression, impulsivity, and attention-deficit hyperactivity disorder (Remijnse et al., 2006; ).
Our main aim is the development of a mathematical-computational framework to analyse the macroscopic network behaviour of the striatum area, using data from microscopic simulations of a modified Hodgkin-Huxley network of neurons. We achieve our goal by an equation-free approach (; ; Marschler et al., 2014a; Laing, 2018). We identify the mean synaptic activity as the appropriate macroscopic variable that captures the network dynamics. This is also justified from other computational and medical-clinical studies Popovych and Tass (2019); ; Parasuram et al. (2016) since neural network activity like synchronisation, is also reflected by the amplitude of the local field potential (LFP) which is modelled as an ensemble-averaged synaptic activity of neurons. The equation-free method allows to perform a numerical bifurcation and stability analysis for the macroscopic dynamics. Our analysis will reveal an interesting property which is not accessible by straightforward simulations of the network, namely, the existence of two macroscopic network states, a high activation state and an unstable low activation state. The different macroscopic states can be related to healthy and pathological conditions existing in neurological disorders. During obsessive-compulsive disorder there is an increased cortico-striatal activity (Maltby et al., 2005; Marsh et al., 2014). Our computational model also predicts this high activation solution. Additionally the model shows a second solution which provides a low activation state, leading the striatum activity to a less pathological activation. Such a state is a potential healthy target for deep brain stimulation and may result in strategies for an efficient treatment. In fact, based on our analysis we propose a closed loop macroscopic control scheme which provides better performance compared to a straightforward deep brain stimulation approach.
2 Construction of the striatum model
We extract the surface of the striatum using magnetic resonance medical data taken from a previously published atlas () and transform into the MNI (Montreal Neurological Institute) coordinate system. We place neurons randomly inside this area, see Figure 1A.
FIGURE 1
2.1 Modelling the striatum network by small word connectivity
We place in total 1995 neurons as network nodes in the striatum area. In line with medical studies (Yager et al., 2015) we assume that the vast majority of nodes (i.e., 95% of nodes) represent medium spiny neurons (MSN) while the remaining 5% of nodes are interneurons. The actual connectivity of the striatum is constructed following the idea of the small-world algorithm (Watts and Strogatz, 1998;
2.2 Modelling of the neuron dynamics
Our striatum network contains two types of neurons, the medium spiny neurons (MSN) representing 95% of all neurons and fast spiking neurons (FSI) which are the remaining ones. For the equations of motion of the neuron dynamics we follow (
An MSN or FS neuron at node is modelled by current balance equations for the membrane potential where is the membrane capacity. The current balance Eq. 1 contains four membrane currents, the fast sodium and potassium currents , , the leak current . For MSN neurons an M-current occurs whereas FS neurons contain a D-current (
The gating variables , , , , at node each obey, following the Hodgkin-Huxley formalism (
TABLE 1
| Parameters and | MSN | FS |
|---|---|---|
| 80 | ||
| 100 | ||
| 1.3 | - | |
| - | ||
| −67 mV | −70 mV | |
| −100 mV | −90 mV | |
| 50 mV | 50 mV | |
| −100 mV | - | |
| - | −90 mV |
Values for the conductance and inverse potential for the MSN and FS neurons.
The current in Eq. 1 is written as , where predominantly represents a network activation current which describes the dependence of the neuronal activation due to intensity of cortical-striatal connectivity. The coupling between the neurons in Eq. 1 is described by the synaptic current . Details will be outlined in the next Section 2.3. Since our network model contains realistic spatial details about the actual neural system we would be able to model the impact of deep brain stimulation as well. Thus, the term representing the deep brain stimulation, enters here as an additive contribution. In our analysis we keep , except the last section where we discuss the implementation of DBS in our model.
2.3 Description of the network inhibitory synaptic activity
We model the activation of a synapse using the activation variable for the -th neuron (
The synaptic current for the MSNs consists of two parts, first the sum of synaptic currents over medium spiny neurons (describing the inhibition between MSN-MSN neurons) and second, the sum over interneurons (interneurons inhibition of MSN), so that Eq. 8 yields
Similarly for an interneuron the synaptic current is given byHere the first sum represents the rare case of FS-FS inhibition, while the second term governs the feedback inhibitory loop of MSN to interneurons. For the conductivity values we use and .
In summary, Eqs 1, 2, 3, 4, 6, 7, 9, and 10 constitute a high dimensional heterogeneous set of coupled nonlinear differential equations defined on a graph with adjacency matrix . The state of each neuron at node is described by the set of variables . Figures 1B,C illustrates the temporal dynamics of the network.
3 Equation-free method for analysing macroscopic network behaviour
To describe the main idea in basic terms, consider a high-dimensional dynamical system, for instance the dynamics of the neural network presented in the previous section. The network model evolves in time under specified known microscopic rules, e.g., the equations of motion for each node described above. Denote by the state of the full network. Its time evolution over a time interval is given bywhere the so-called flow can be obtained from the (numerical) integration of the microscopic equations of motion.
We are interested in analysing the network behaviour on a different macroscopic scale. Assume there exists a suitable low-dimensional macroscopic variable with , which captures the emergent collective behaviour of the network dynamics. Such collective coordinates depend on the degree of freedoms of the system, and are determined by a restriction map . Often one uses suitable averages for the purpose to capture the dynamics of a system at a macroscopic scale, see, e.g., (
4 Equation-free analysis of the striatum model
In this section, we apply the theoretical framework of an equation-free approach (
4.1 Lifting and restriction operator
The mean synaptic activity of MSNs turns out to be a suitable macroscopic variableWhile such a choice looks appealing, and can be justified with hindsight, one can also support this choice by a more subtle data analysis using for instance diffusion maps, a data-driven method for dimensional reduction and manifold learning (
The crucial step to build the timestepper is the lifting operator. The construction of the lifting operator is based on two steps. First, we record a microscopic realisation of the system from a previous simulation, i.e., we store all the microscopic variables after a short period of 20 ms. Then, in the second step, we assign synaptic variables to the 1856 MSNs in the following way: Given a mean synaptic activity , we assign synaptic variables to the 1856 MSNs by randomisation, where are uncorrelated normal random variables, while we keep the other microscopic degrees of freedom unchanged. Then, we numerically integrate the coupled Hodgkin-Huxley equations for all neurons for a (macroscopically) short time , to derive the new network microstate . The time is chosen such that the other variables become enslaved to the mean synaptic activity . In fact, relatively short bursts on short time scales establish such a slaving relation (
Finally, we apply the restriction operator to the new network microstate , i.e., we compute the mean synaptic activity which then defines the macroscopic evolution law . Here we have explicitly noted a constant network activation current as a static parameter of our model (see Eq. 1). Figure 2 shows a graphical representation of the numerical procedure.
FIGURE 2

Equation-free construction of the timestepper: Start with the macroscopic variable , the mean synaptic activity. Transform this value into a consistent microscopic network state through a lifting operator. We simulate the network equations for the all neurons and for a short macroscopic time to derive the new network microstate . Finally, average the synaptic variables to obtain the macroscopic variable .
Since the macroscopic variable changes little on the time scale we can approximate the time discrete dynamics by a time continuous first order differential equationwhere the right hand side in the difference quotient is determined by our equation free approach.
4.2 Data-driven system identification, stability and bifurcation analysis
Using Eq. 12 we can construct the right hand side of the macroscopic equation of motion. We perform independent parallel computations by covering the phase space with an equidistant mesh of initial values for the macroscopic variable, and the axis with an equidistant lattice of parameter values. We thus obtain the right hand side with fairly high numerical resolution. The results for in dependence on are depicted in Figure 3, for , 10, 12, 12.8, 13, and . Despite a quite noisy neuron dynamics we obtain a rather smooth result for which shows little fluctuations. The computation of has been based on macroscopic averages over at about 2000 neurons and an ensemble average of 20 realisations, resulting in statistical errors of about , in line with the data shown in Figure 3. The fixed points of the macroscopic dynamics are given by the zeros of the function , while the sign of the slope at the zero determines the stability of the fixed point. The fixed point is stable for negative slope, while the fixed point is unstable for positive slope. Here stability refers to stability with respect to the macroscopic dynamics which is solely governed by the mean synaptic activity . While the internal microscopic dynamics is still highly complex, at the macroscopic level the motion is captured by the single scalar quantity . With our equation free approach we have been able to determine the right hand side of the macroscopic equation of motion (22), see Figure 3. Thus, the zeros of this right hand side and the sign of the slope allow us to determine the location and the macroscopic linear stability of the macroscopic stationary state.
FIGURE 3

Equation-free system identification: For different values of parameter , we construct numerically the right hand side in dependence on the mean synaptic activity . Red dots indicate the zeros of , i.e., the fixed point solutions of the macroscopic dynamics. Clearly, the right hand side shows one fixed point at , two fixed points in the range and finally, no fixed point for .
We observe that the shape of right hand side is smooth and the graph shifts down, as the value of parameter increases. As a consequence the number of macroscopic fixed points changes. For we obtain one stable fixed point. As the value of increases, e.g., for , we see two fixed points, an unstable one at small values and a second stable one at with high network activation. For increasing values of the parameter these two fixed points still persist with stability properties unchanged, but at a critical value close to the two fixed points collide and disappear in a saddle-node bifurcation. We can condense this information in a bifurcation diagram, see Figure 4. There are two branches of steady state solutions. The high neural activation solutions are stable (solid red line in Figure 4) while the low activation branch is unstable (dashed blue line in Figure 4). These two branches bifurcate in a saddle node bifurcation at . In general, an increased intensity of the current changes the rhythmicity and the density of activation. In the pathological case which corresponds to high activation, neurons exhibit spiking activity with variable periods (i.e., non-constant period between two spikes), and some neurons appear to show brief intervals of synchronised activity, preceded and followed by non-synchronous firing. Such synchrony could either be due to transient common activation via network inputs (e.g., inhibition of fast-spiking neurons), or it could actually occur by chance with this tonic firing at a relatively high frequency. The equation-free method remarkably reveals also an unstable low neural activation branch. Such an unstable state is not accessible by direct numerical simulations of the network model, it is a genuine outcome of the equation free approach. In terms of the microscopic dynamics such a state corresponds to an invariant saddle in the full phase space containing all microscopic degrees of freedom. For a potential neurophysiological interpretation of this state we recall that during the pathological case of obsessive-compulsive disorder, there is a hyperactivity of the striatum network. Thus, the stable high-activation branch of the solution can be seen as a pathological condition. The unstable low activation state that cannot be reached in direct simulations is nevertheless accessible by control techniques, such as closed loop deep brain stimulations. When successful, stabilising this unstable low activation state will produce a therapeutic effect on the striatum network hyperactivity.
FIGURE 4

Macroscopic system analysis of the striatum network: Bifurcation diagram as obtained from the equation-free analysis of the striatum network. The network activation current is used as the bifurcation parameter, and the mean synaptic activity of MSNs acts as macroscopic variable. Solid line (red) are stable fixed points, dashed line (blue) are unstable fixed points. The two branches disappear in a saddle-node bifurcation at . The insets show temporal simulations of mean synaptic activity S, for . Simulations converge to the upper stable branch of the bifurcation diagram.
5 Discussion
The recently invented field of network physiology aims at inferring dynamical interactions in complex biological or medical systems from observed data. With its inherently interdisciplinary intention this field aims to understand, based on data analysis, modelling approaches, or clinical practice, how diverse biological or physiological sub-systems interact from the cellular microscopic to the phenomenological macroscopic level, to explain diverse physiological phenomena, such as healthy or unhealthy states (see, e.g., (Schöll, 2022) for a recent editorial). Looking at the emerging field of network physiology from an equation free perspective has the potential to add an additional facet to this area of research. An equation free approach aims at uncovering the complex dynamical behaviour at a macroscopic level without the need to reconstruct the complex underlying microscopic dynamical network, thus addressing a main goal of network physiology from the outset. We have showcased a computational framework to analyse biophysical neuronal network models, and we applied the method to the striatum area. Based on a realistic mathematical model for the microscopic dynamics of the striatum we have been able to detect relevant macrostates and their dynamical features using an equation-free approach. One major contribution of this research work is that the method bridges the different levels of spatio-temporal scales, the microscopic ones where the physics of neurons is known and the macroscopic ones where the analysis is performed. The activity of neurons and the individual synaptic activity is given using the Hodgkin-Huxley formalism, which constitutes the microscopic description of the model. The network connects these neurons and produces a macroscopic or emergent behaviour with different spatio-temporal properties. Importantly, our equation-free approach allows us to study this emergent behaviour in detail, i.e., to perform stability and bifurcation analysis. The synaptic activity shows steady behaviour, which corresponds to the high network activity, the upper branch of solution in Figure 4, while the corresponding spectrum of the mean membrane activity shows a characteristic peak at the gamma band (see as well Figure 1D). Several other studies also analyse the macroscopic network activity or the emergent network behaviour (
Our realistic microscopic model was based on an FDA-approved state-of-the-art human atlas (
Within an equation-free approach we were able to investigate the crucial macroscopic behaviour for the mean synaptic activity. Such an analysis not just reproduces the dynamically stable high activity branch, but also shows an unstable low activity state which is inaccessible by direct simulations of the model. Such unstable dynamical states could be promising targets for treating pathological conditions.
Deep brain stimulation (DBS) of the striatum has evolved as a promising therapy for patients with severe and resistant forms of obsessive compulsive disorders (OCD) and mental impairments (Rodriguez-Romaguera et al., 2012;
FIGURE 5

Deep brain stimulation (DBS) on the striatum model: Simulation of the network model with the current Eq. 13 added to the network equations.
Thanks to the equation-free framework we are now able to design a macroscopic proportional feedback controller for DBS. For instance, for , the equation-free analysis showed the existence of one unstable fixed point at mean synaptic activity . We use the amplitude of DBS, that means , as control variable which is adjusted due to linear proportional feedbackwhere denotes the gain of the control. By choosing the gain appropriately we aim at driving the system towards the low activation state. Figure 6 shows the application of DBS at the point and for frequency 200Hz. We observe that after switching on the feedback control (ms) the macroscopic activity gets closer to the healthy low activation state, see Figure 6B, and that synchronisation is destroyed in favour of a desynchronised state, see Figure 6A. In general, explaining the mechanism of DBS and how it acts in the evolved brain network is still a mystery. For example, in Parkinson’s disease, it is unclear whether DBS suppresses or enhances the neural activity of the targeted areas (Rubin and Terman, 2004; Montgomery and Gale, 2008). In Figure 6, we present two stages of DBS: the first 150 ms without a control scheme and the second part after 150 ms. While DBS without control induces synchronised activity of neurons such a synchronised state is suppressed when control is turned on. In that respect the closed-loop DBS results in realistic patterns closer to healthy conditions.
FIGURE 6

Closed loop control scheme for DBS on the striatum network: Application of DBS with constant amplitude along the line of Eq. 13 for (red). Close loop control scheme for DBS, using Eq. 14, adjusting the DBS amplitude by linear proportional feedback for . (A) Raster plot for randomly chosen neurons. Black dots represent activated neurons (i.e., time dependent action potentials passing through −15 mV towards positive values. (B) The mean synaptic activity for DBS without control (red), and DBS with linear proportional feedback (blue).
There are still considerable unknowns for a successful application of DBS such as the anatomical targets of stimulation, optimal stimulation parameters like amplitude and frequency of stimulation, as well as long-term effects of stimulation. In obsessive compulsive disorders hyperactive frontal-striatal activity has been reported (Maltby et al., 2005; Marsh et al., 2014). We conjecture that this hyperactivity is qualitatively similar to the stable upper branch solution as depicted in the bifurcation diagram Figure 4. Since our network model allows for properly modelling the network activation current a corresponding equation-free analysis of the model may then provide some answers to the open questions raised above. Our successful simple showcase provides evidence that such an ambitious program may succeed.
Statements
Data availability statement
The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding authors.
Author contributions
KS: Formal Analysis, Investigation, Methodology, Software, Writing–original draft, Writing–review and editing. RK: Conceptualization, Investigation, Methodology, Writing–review and editing. WJ: Methodology, Writing–review and editing. JS: Conceptualization, Funding acquisition, Methodology, Supervision, Writing–original draft, Writing–review and editing.
Funding
The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - SFB 1270/2 - 299150580 - Collaborative Research Centre ELAINE.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
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References
1
BassettD.BullmoreE. (2006). Small-world brain networks. Neuroscientist12, 512–523. 10.1177/1073858406293182
2
BassettD. S.BullmoreE. T. (2017). Small-world brain networks revisited. Neurosci.23, 499–516. PMID: 27655008. 10.1177/1073858416667720
3
BermanB.SmucnyJ.WylieK.SheltonE.KronbergE.LeeheyM.et al (2016). Levodopa modulates small-world architecture of functional brain networks in Parkinson’s disease. Mov. Disord.31, 1676–1684. 10.1002/mds.26713
4
BhattacharyaS.BrincatS. L.LundqvistM.MillerE. K. (2022). Traveling waves in the prefrontal cortex during working memory. PLOS Comput. Biol.18, e1009827. 10.1371/journal.pcbi.1009827
5
BlomstedtP.SjöbergR. L.HanssonM.BodlundO.HarizM. I. (2013). Deep brain stimulation in the treatment of obsessive-compulsive disorder. World Neurosurg.80, e245–e253. 10.1016/j.wneu.2012.10.006
6
BullmoreE.SpornsO. (2009). Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci.10, 186–198. 10.1038/nrn2575
7
BuzsákiG. (2004). Large-scale recording of neuronal ensembles. Nat. Neurosci.7, 446–451. 10.1038/nn1233
8
CalabresiP.PicconiB.TozziA.Di FilippoM. (2007). Dopamine-mediated regulation of corticostriatal synaptic plasticity. Trends Neurosci.30, 211–219. Fifty years of dopamine research. 10.1016/j.tins.2007.03.001
9
CalabresiP.PicconiB.TozziA.GhiglieriV.Di FilippoM. (2014). Direct and indirect pathways of basal ganglia: a critical reappraisal. Nat. Neurosci.17, 1022–1030. 10.1038/nn.3743
10
ChartoveJ. A. K.McCarthyM. M.Pittman-PollettaB. R.KopellN. J. (2020). A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control. PLOS Comput. Biol.16, e1007300–e1007330. 10.1371/journal.pcbi.1007300
11
CoifmanR. R.LafonS. (2006). Diffusion maps. Appl. Comput. Harmon. Analysis21, 5–30. Special Issue: Diffusion Maps and Wavelets. 10.1016/j.acha.2006.04.006
12
CompteA.BrunelN.Goldman-RakicP.WangX.-J. (2000). Synaptic mechanisms and network dynamics underlying spatial working memory in a cortical network model. Cereb. Cortex10, 910–923. 10.1093/cercor/10.9.910
13
CrittendenJ.GraybielA. (2011). Basal ganglia disorders associated with imbalances in the striatal striosome and matrix compartments. Front. Neuroanat.5, 59. 10.3389/fnana.2011.00059
14
CrowellA.Ryapolova-WebbE.OstremJ.GalifianakisN.ShimamotoS.LimD.et al (2012). Oscillations in sensorimotor cortex in movement disorders: an electrocorticography study. Brain135, 615–630. 10.1093/brain/awr332
15
DecoG.JirsaV.RobinsonP.BreakspearM.FristonK. (2008). The dynamic brain: from spiking neurons to neural masses and cortical fields. PLoS Comput. Biol.4, e1000092. 10.1371/journal.pcbi.1000092
16
DecoG.Ponce-AlvarezA.MantiniD.RomaniG. L.HagmannP.CorbettaM. (2013). Resting-state functional connectivity emerges from structurally and dynamically shaped slow linear fluctuations. J. Neurosci.33, 11239–11252. 10.1523/JNEUROSCI.1091-13.2013
17
de Santos-SierraD.Sendiña-NadalI.LeyvaI.AlmendralJ. A.AnavaS.AyaliA.et al (2014). Emergence of small-world anatomical networks in self-organizing clustered neuronal cultures. Plos One9, 1–8. 10.1371/journal.pone.0085828
18
DsilvaC. J.TalmonR.CoifmanR. R.KevrekidisI. G. (2018). Parsimonious representation of nonlinear dynamical systems through manifold learning: a chemotaxis case study. Appl. Comput. Harmon. Analysis44, 759–773. 10.1016/j.acha.2015.06.008
19
ErmentroutB.TermanD. (2012). Neural networks as spatio-temporal pattern-forming systems. New York: Springer.
20
FangJ.ChenH.CaoZ.JiangY.MaL.MaH.et al (2017). Impaired brain network architecture in newly diagnosed Parkinson’s disease based on graph theoretical analysis. Neurosci. Lett.657, 151–158. 10.1016/j.neulet.2017.08.002
21
FesceR. (2024). The emergence of identity, agency and consciousness from the temporal dynamics of neural elaboration. Front. Netw. Physiology4, 1292388. 10.3389/fnetp.2024.1292388
22
GearC.KaperT.KevrekidisI.ZagarisA. (2005). Projecting to a slow manifold: singularly perturbed systems and legacy codes. SIAM J. Appl. Dyn. Syst.4, 711–732. 10.1137/040608295
23
GearC. W.HymanJ. M.KevrekididP. G.KevrekidisI. G.RunborgO.TheodoropoulosC. (2003). Equation-free, coarse-grained multiscale computation: enabling mocroscopic simulators to perform system-level analysis. Commun. Math. Sci.1, 715–762. 10.4310/cms.2003.v1.n4.a5
24
GolombD.DonnerK.ShachamL.ShlosbergD.AmitaiY.HanselD. (2007). Mechanisms of firing patterns in fast-spiking cortical interneurons. PLOS Comput. Biol.3, e156. 10.1371/journal.pcbi.0030156
25
HodgkinA. L.HuxleyA. F. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. J. Physiology117, 500–544. 10.1113/jphysiol.1952.sp004764
26
IaconoM. I.NeufeldE.AkinnagbeE.BowerK.WolfJ.Vogiatzis OikonomidisI.et al (2015). Mida: a multimodal imaging-based detailed anatomical model of the human head and neck. PLOS ONE10, e0124126. 10.1371/journal.pone.0124126
27
KalenscherT.LansinkC. S.LankelmaJ. V.PennartzC. M. A. (2010). Reward-associated gamma oscillations in ventral striatum are regionally differentiated and modulate local firing activity. J. Neurophysiol.103, 1658–1672. 10.1152/jn.00432.2009
28
KevrekidisI.SamaeyG. (2009). Equation-free multiscale computation: algorithms and applications. Annu. Rev. Phys. Chem.60, 321–344. 10.1146/annurev.physchem.59.032607.093610
29
KozmaR.PuljicM.BalisterP.BollobásB.FreemanW. J. (2005). Phase transitions in the neuropercolation model of neural populations with mixed local and non-local interactions. Neurocomputing92, 367–379. 10.1007/s00422-005-0565-z
30
KromerJ. A.TassP. A. (2024). Coordinated reset stimulation of plastic neural networks with spatially dependent synaptic connections. Front. Netw. Physiology4, 1351815. 10.3389/fnetp.2024.1351815
31
LaingC.ChowC. (2002). A spiking neuron model for binocular rivalry. J. Comput. Neurosci.12, 39–53. 10.1023/a:1014942129705
32
LaingC. R. (2018). On the application of “equation-free modelling” to neural systems. J. Comput. Neurosci.20, 5–23. 10.1007/s10827-006-3843-z
33
LaingC. R.FrewenT.KevrekidisI. G. (2010). Reduced models for binocular rivalry. J. Comput. Neurosci.28, 459–476. 10.1007/s10827-010-0227-6
34
MaltbyN.TolinD. F.WorhunskyP.O’KeefeT. M.KiehlK. A. (2005). Dysfunctional action monitoring hyperactivates frontal-striatal circuits in obsessive-compulsive disorder: an event-related fmri study. NeuroImage24, 495–503. 10.1016/j.neuroimage.2004.08.041
35
MarschlerC.Faust-EllsässerC.StarkeJ.Van HemmenJ. (2014a). Bifurcation of learning and structure formation in neuronal maps. EPL108, 48005. 10.1209/0295-5075/108/48005
36
MarschlerC.SieberJ.BerkemerR.KawamotoA.StarkeJ. (2014b). Implicit methods for equation-free analysis: convergence results and analysis of emergent waves in microscopic traffic models. SIAM J. Appl. Dyn. Syst.13, 1202–1238. 10.1137/130913961
37
MarshR.HorgaG.ParasharN.WangZ.PetersonB. S.SimpsonH. B. (2014). Altered activation in fronto-striatal circuits during sequential processing of conflict in unmedicated adults with obsessive-compulsive disorder. Biol. Psychiatry75, 615–622. Obsessive-Compulsive Disorder and the Connectome. 10.1016/j.biopsych.2013.02.004
38
MelzerS.GilM.KoserD. E.MichaelM.HuangK. W.MonyerH. (2017). Distinct corticostriatal gabaergic neurons modulate striatal output neurons and motor activity. Cell Rep.19, 1045–1055. 10.1016/j.celrep.2017.04.024
39
MontbrióE.PazóD.RoxinA. (2015). Macroscopic description for networks of spiking neurons. Phys. Rev. X5, 021028. 10.1103/PhysRevX.5.021028
40
MontgomeryE. B.GaleJ. T. (2008). Mechanisms of action of deep brain stimulation (dbs). Neurosci. Biobehav. Rev.32, 388–407. Special section: Neurobiology of Deep Brain Stimulation: Innovations in Treatment and Basal Ganglia Function. 10.1016/j.neubiorev.2007.06.003
41
Muñoz-ManchadoA.FoldiC.SzydlowskiS.SjulsonL.FarriesM.WilsonC.et al (2016). Novel striatal gabaergic interneuron populations labeled in the 5ht3a(egfp) mouse. Cereb. Cortex26, 96–105. 10.1093/cercor/bhu179
42
NadlerB.LafonS.CoifmanR. R.KevrekidisI. G. (2006). Diffusion maps, spectral clustering and reaction coordinates of dynamical systems. Appl. Comput. Harmon. Analysis21, 113–127. Special Issue: Diffusion Maps and Wavelets. 10.1016/j.acha.2005.07.004
43
NetoffT.ClewleyR.ArnoS.KeckT.WhiteJ. (2004). Epilepsy in small-world networks. J. Neurosci.24, 8075–8083. 10.1523/JNEUROSCI.1509-04.2004
44
PalkarG.WuJ.-y.ErmentroutB. (2023). The inhibitory control of traveling waves in cortical networks. PLOS Comput. Biol.19, e1010697. 10.1371/journal.pcbi.1010697
45
ParasuramH.NairB.D’AngeloE.HinesM.NaldiG.DiwakarS. (2016). Computational modeling of single neuron extracellular electric potentials and network local field potentials using lfpsim. Front. Comput. Neurosci.10, 65. 10.3389/fncom.2016.00065
46
PopovychO.TassP. (2019). Adaptive delivery of continuous and delayed feedback deep brain stimulation - a computational study. Sci. Rep.9, 10585. 10.1038/s41598-019-47036-4
47
RemijnseP. L.NielenM. M. A.van BalkomA. J. L. M.CathD. C.van OppenP.UylingsH. B. M.et al (2006). Reduced orbitofrontal-striatal activity on a reversal learning task in obsessive-compulsive disorder. Archives General Psychiatry63, 1225–1236. 10.1001/archpsyc.63.11.1225
48
Rodriguez-RomagueraJ.MonteF. H. M. D.QuirkG. J. (2012). Deep brain stimulation of the ventral striatum enhances extinction of conditioned fear. Proc. Natl. Acad. Sci.109, 8764–8769. 10.1073/pnas.1200782109
49
RubinJ.TermanD. (2004). High frequency stimulation of the subthalamic nucleus eliminates pathological thalamic rhythmicity in a computational model. J. Comput. Neurosci.16, 211–235. 10.1023/B:JCNS.0000025686.47117.67
50
SchöllE. (2022). Network physiology, insights in dynamical systems: 2021. Front. Netw. Physiol.2, 1–3. 10.3389/fnetp.2022.961339
51
SheQ.ChenG.ChanR. (2016). Evaluating the small-world-ness of a sampled network: functional connectivity of entorhinal-hippocampal circuitry. Sci. Rep.6, 21468. 10.1038/srep21468
52
SieberJ.MarschlerC.StarkeJ. (2018). Convergence of equation-free methods in the case of finite time scale separation with application to deterministic and stochastic systems. SIAM J. Appl. Dyn. Syst.17, 2574–2614. 10.1137/17M1126084
53
SiettosC.StarkeJ. (2016). Multiscale modeling of brain dynamics: from single neurons and networks to mathematical tools. Wiley Interdiscip. Rev. Syst. Biol. Med.8, 438–458. 10.1002/wsbm.1348
54
SiettosC. I. (2011). Equation-free multiscale computational analysis of individual-based epidemic dynamics on networks. Appl. Math. Comput.218, 324–336. 10.1016/j.amc.2011.05.067
55
SpiliotisK.ButenkoK.StarkeJ.van RienenU.KöhlingR. (2024). Towards an optimised deep brain stimulation using a large-scale computational network and realistic volume conductor model. J. Neural Eng.20, 066045. 10.1088/1741-2552/ad0e7c
56
SpiliotisK.ButenkoK.van RienenU.StarkeJ.KöhlingR. (2022a). Complex network measures reveal optimal targets for deep brain stimulation and identify clusters of collective brain dynamics. Front. Phys.10. 10.3389/fphy.2022.951724
57
SpiliotisK.SiettosC. (2011). A timestepper-based approach for the coarse-grained analysis of microscopic neuronal simulators on networks: bifurcation and rare-events micro-to macro-computations. Neurocomputing74, 3576–3589. 10.1016/j.neucom.2011.06.018
58
SpiliotisK.StarkeJ.FranzD.RichterA.KöhlingR. (2022b). Deep brain stimulation for movement disorder treatment: exploring frequency-dependent efficacy in a computational network model. Biol. Cybern.116, 93–116. 10.1007/s00422-021-00909-2
59
StamC.ReijneveldJ. (2007). Graph theoretical analysis of complex networks in the brain. Nonlinear Biomed. Phys.1, 3. 10.1186/1753-4631-1-3
60
SzalisznyóK.SilversteinD. N. (2021). Computational predictions for ocd pathophysiology and treatment: a review. Front. Psychiatry12, 687062. 10.3389/fpsyt.2021.687062
61
TepperJ. M.TecuapetlaF.KoósT.Ibáñez-SandovalO. (2010). Heterogeneity and diversity of striatal gabaergic interneurons. Front. Neuroanat.4 (150), 1–18. 10.3389/fnana.2010.00150
62
TermanD.RubinJ.YewA.WilsonC. (2002). Activity patterns in a model for the subthalamopallidal network of the basal ganglia. J. Neurosci.22, 2963–2976. 10.1523/JNEUROSCI.22-07-02963.2002
63
VenkadeshS.ShaikhA.ShakeriH.BarretoE.Van HornJ. D. (2024). Biophysical modulation and robustness of itinerant complexity in neuronal networks. Front. Netw. Physiology4, 1302499. 10.3389/fnetp.2024.1302499
64
WattsD.StrogatzS. (1998). Collective dynamics of 'small-world' networks. Nature393, 440–442. 10.1038/30918
65
WidgeA. S.ZorowitzS.BasuI.PaulkA. C.CashS. S.EskandarE. N.et al (2019). Deep brain stimulation of the internal capsule enhances human cognitive control and prefrontal cortex function. Nat. Commun.10, 1536. 10.1038/s41467-019-09557-4
66
WuH.HarizM.Visser-VandewalleV.ZrinzoL.CoenenV. A.ShethS. A.et al (2021). Deep brain stimulation for refractory obsessive-compulsive disorder (ocd): emerging or established therapy?Mol. psychiatry26, 60–65. 10.1038/s41380-020-00933-x
67
YagerL.GarciaA.WunschA.FergusonS. (2015). The ins and outs of the striatum: role in drug addiction. Neuroscience301, 529–541. 10.1016/j.neuroscience.2015.06.033
68
ZandtM. V.FlanaganD.PittengerC. (2024). Sex differences in the distribution and density of regulatory interneurons in the striatum. BioRxiv [Preprint]. 10.1101/2024.02.29.582798
Summary
Keywords
network physiology, equation free method, complex network dynamics, obsessive compulsive disorders, control of neurological disorders
Citation
Spiliotis K, Köhling R, Just W and Starke J (2024) Data-driven and equation-free methods for neurological disorders: analysis and control of the striatum network. Front. Netw. Physiol. 4:1399347. doi: 10.3389/fnetp.2024.1399347
Received
11 March 2024
Accepted
16 July 2024
Published
07 August 2024
Volume
4 - 2024
Edited by
Eckehard Schöll, Technical University of Berlin, Germany
Reviewed by
Oleksandr Popovych, Helmholtz Association of German Research Centres (HZ), Germany
Ali Foroutannia, University of Canberra, Australia
Rossella Rizzo, University of Palermo, Italy
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© 2024 Spiliotis, Köhling, Just and Starke.
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*Correspondence: Konstantinos Spiliotis, konstantinos.spiliotis@uni-rostock.de; Wolfram Just, wolfram.just@uni-rostock.de
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