Skip to main content

PERSPECTIVE article

Front. Genet., 09 February 2022
Sec. Computational Genomics
This article is part of the Research Topic SARS-CoV-2: From Genetic Variability to Vaccine Design View all 13 articles

ORF8 and Health Complications of COVID-19 in Down Syndrome Patients

  • 1Laboratorio de Dinámica de Redes Genéticas, Centro de Investigación en Dinámica Celular, Universidad Autónoma del Estado de Morelos, Cuernavaca, Mexico
  • 2Centro de Ciencias de la Complejidad (C3), Universidad Nacional Autónoma de México, Ciudad de México, Mexico
  • 3Laboratorio de Genética Molecular, Epigenética, Desarrollo y Evolución de Plantas, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico

This manuscript intends to be a “letter to the editor” with some complementary commentaries to the manuscript by Valcarcel et al. (2021). In that work, ORF8 was characterized as a notable SARS-CoV-2 protein able to downregulate the function of MHC-I (Zhang et al., 2021) and which shares structural similarities with human immunoglobulins (including interleukins) that can eventually produce immune dysregulation (Valcarcel et al., 2021). It is not still clear if all COVID-19 patients are equally susceptible to this ORF8-mediated immune dysregulation, but Down syndrome (Ds) patients with COVID-19 have more health complications, such as cardiac diseases, and higher rate of mortality than the general population, especially in those over 40 years old (Hüls et al., 2021). Ds is an important comorbidity since these patients have an extra copy of the TMPRSS2 gene, which probably produces enhanced levels of the transmembrane TMPRSS2 protease for S protein priming, facilitating the SARS-CoV-2 infection of the target cells (Hoffmann et al., 2020; De Toma and Dierssen, 2021).

Therefore, we proposed a minimal mathematical model of the effect of the extra copy of TMPRSS2 on ORF8 production and persistence in the infected cells (Figure 1A), which reasonably fits with the experimental data reported in literature. According to the model results, we found that systemic levels of ORF8 are considerably higher and persists up to 40 days in patients with Ds (Figures 1B, C) in contrast with patients without Ds. These results support our hypothesis that the high susceptibility of people with Ds to be infected by SARS-CoV-2 is a consequence of the overproduction of TMPRSS2, which produces high systemic levels of ORF8 with the subsequent immune dysregulation, lung inflammatory effects, and cardiac damage that worsen the disease (Espinosa, 2020).

FIGURE 1
www.frontiersin.org

FIGURE 1. Down syndrome patients have higher levels of ORF8 during SARS-COV-2 infection. (A) Once the SARS-CoV-2 ACE2-Spike complexes enter the cells (IC), the production of genomic RNA (gRNA) originates ORF8 antigens by several editing steps. These copies of ORF8 may be naturally degraded or eliminated by antibodies. (A) The simplified model of ORF8 production used in this work. In the model k1 = 0.4 days−1, s1 = 100 days−1, k2 = 1.3 days−1, s2 = 20 days−1, kab = 0.3 days−1, and k1/2 = 0.5 days−1. (B) Mean levels of ORF8 obtained from the model simulations at 2, 4, 6, 30, and 40 days. These results suggest that ORF8 persists even if the patient is discharged 15 days after viral onset. (C) Effect of the presence of an extra copy of TMPRSS2. These simulations show that an extra copy of TMPRSS2 gene is able to dramatically increase systemic levels of ORF8, which implies that Down syndrome patients are more susceptible to medical complications produced by ORF8.

Additional consequences of the overproduction of ORF8 in Ds patients with COVID-19 are as follows: 1) the several structural similarities of this viral protein with the nitric oxide synthase can alter the serum concentrations of NO, reducing the protective function of this gas against arrhythmias (Burger and Feng, 2011); 2) ORF8 can also be an important factor to aggravate the cytokine storm due its high degree of structural mimicry with immunoglobulins and their receptors (Valcarcel et al., 2021), with the subsequent small protoembolic events that cause a cardiovascular damage similar to that of older Ds patients never infected with Covid-19 (Colvin and Yeager, 2017; De Toma and Dierssen, 2020). 3) Taking into consideration that chromosome 21 also harbors multiple genes involved in the immune response, and their overexpression induces the dysregulation of interleukins IL-10, IL-22, and IL-26 prior to infection (De Weerd and Nguyen, 2020), the presence of high levels of ORF8 could also be an important factor to aggravate the cytokine storm in Ds patients with COVID-19.

However, it is necessary to do more theoretical, experimental, and clinical research to elucidate the precise role of ORF8 in the immune dysregulation, lung inflammatory effects, and cardiac damage in this group of patients.

Author Contributions

AB and AV have contributed equally to this work and share first authorship. AB made the in silico analysis of the model. All authors participated equally in the writing of the manuscript.

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Acknowledgments

AB and AV thank CONACYT for the postdoctoral fellowship. We thank Erika Juarez Luna for her logistical support.

References

Bar-On, Y. M., Flamholz, A., Phillips, R., and Milo, R. (2020). Sars-CoV-2 (Covid-19) by the Numbers. eLife 9, e57309. doi:10.7554/eLife.57309

PubMed Abstract | CrossRef Full Text | Google Scholar

Can, H., Köseoğlu, A. E., Erkunt Alak, S., Güvendi, M., Döşkaya, M., Karakavuk, M., et al. (2020). In Silico discovery of Antigenic Proteins and Epitopes of SARS-CoV-2 for the Development of a Vaccine or a Diagnostic Approach for COVID-19. Sci. Rep. 10, 22387. doi:10.1038/s41598-020-79645-9

PubMed Abstract | CrossRef Full Text | Google Scholar

Colvin, K. L., and Yeager, M. E. (2017). What People with Down Syndrome Can Teach Us about Cardiopulmonary Disease. Eur. Respir. Rev. 26, 160098. doi:10.1183/16000617.0098-2016

PubMed Abstract | CrossRef Full Text | Google Scholar

De Toma, I., and Dierssen, M. (2021). Network Analysis of Down Syndrome and SARS-CoV-2 Identifies Risk and Protective Factors for COVID-19. Sci. Rep. 11, 1930. doi:10.1038/s41598-021-81451-w

PubMed Abstract | CrossRef Full Text | Google Scholar

Espinosa, J. M., (2020). Down Syndrome and COVID-19: A Perfect Storm?. Cell Reports Medicine 1, 1–8. doi:10.1016/j.xcrm.2020.100019

PubMed Abstract | CrossRef Full Text | Google Scholar

Burger, D. E., and Feng, Q. (2011). Protective Role of Nitric Oxide against Cardiac Arrhythmia - an Update. Tonoj 3 (Suppl. 1-M6), 38–47. doi:10.2174/1875042701103010038

CrossRef Full Text | Google Scholar

Hachim, A., Kavian, N., Cohen, C. A., Chin, A. W. H., Chu, D. K. W., Mok, C. K. P., et al. (2020). ORF8 and ORF3b Antibodies Are Accurate Serological Markers of Early and Late SARS-CoV-2 Infection. Nat. Immunol. 21, 1293–1301. doi:10.1038/s41590-020-0773-7

PubMed Abstract | CrossRef Full Text | Google Scholar

Hoffmann, M., Kleine-Weber, H., Schroeder, S., Krüger, N., Herrler, T., Erichsen, S., et al. (2020). SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor. Cell 181, 271–280. doi:10.1016/j.cell.2020.02.052

PubMed Abstract | CrossRef Full Text | Google Scholar

Hüls, A., Costa, A. C. S., Dierssen, M., Baksh, R. A., Bargagna, S., Baumer, N. T., et al. (2021). Medical Vulnerability of Individuals with Down Syndrome to Severe COVID-19-Data from the Trisomy 21 Research Society and the UK ISARIC4C Survey. EClinicalMedicine 33, 100769. doi:10.1016/j.eclinm.2021.100769

PubMed Abstract | CrossRef Full Text | Google Scholar

Peng, Y., Mentzer, A. J., Liu, G., Yao, X., Yin, Z., Dong, D., et al. (2020). Broad and strong Memory CD4+ and CD8+ T Cells Induced by SARS-CoV-2 in UK Convalescent Individuals Following COVID-19. Nat. Immunol. 21, 1336–1345. doi:10.1038/s41590-020-0782-6

PubMed Abstract | CrossRef Full Text | Google Scholar

Valcarcel, A., Bensussen, A., Álvarez-Buylla, E. R., and Díaz, J. (2021). Structural Analysis of SARS-CoV-2 ORF8 Protein: Pathogenic and Therapeutic Implications. Front. Genet. 12, 1–8. doi:10.3389/fgene.2021.693227

CrossRef Full Text | Google Scholar

Weerd, N. A., and Nguyen, T. (2012). The Interferons and Their Receptors-Distribution and Regulation. Immunol. Cel Biol 90, 483–491. doi:10.1038/icb.2012.9

CrossRef Full Text | Google Scholar

Wölfel, R., Corman, V. M., Guggemos, W., Seilmaier, M., Zange, S., Müller, M. A., et al. (2020). Virological Assessment of Hospitalized Patients with COVID-2019. Nature 581, 465–469. doi:10.1038/s41586-020-2196-x

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, Y., Chen, Y., Li, Y., Huang, F., Luo, B., Yuan, Y., et al. (2021). The ORF8 Protein of SARS-CoV-2 Mediates Immune Evasion through Down-Regulating MHC-Ι. Proc. Natl. Acad. Sci. USA 118, e2024202118. doi:10.1073/pnas.2024202118

PubMed Abstract | CrossRef Full Text | Google Scholar

Appendix

The model we used in this work takes into account the levels of the Spike-ACE2-TMPRSS2 complex (IC) that allows the internalization of the SARS-CoV-2 genomic RNA (gRNA) and the systemic levels of ORF8. To model ORF8 systemic levels, we considered the half-life of the protein (Can et al., 2020) as well as the effect of neutralizing antibodies against ORF8 (Hachim et al., 2020) (Figure 1A). Next, we used ex vivo data obtained from COVID-19 patients (Bar-On et al., 2020; Hachim et al., 2020; Peng et al., 2020; Wölfel et al., 2020) to estimate parameters and to calibrate the model congruently with previous observations (Peng et al., 2020). The model was numerically solved using the Runge–Kutta 4-5 method and MATLAB software.

Keywords: SARS-CoV-2, COVID-19, ORF8, Down syndrome, Cardiac damage

Citation: Bensussen A, Valcarcel A, Álvarez-Buylla ER and Díaz J (2022) ORF8 and Health Complications of COVID-19 in Down Syndrome Patients. Front. Genet. 13:830426. doi: 10.3389/fgene.2022.830426

Received: 07 December 2021; Accepted: 10 January 2022;
Published: 09 February 2022.

Edited by:

Dariusz Plewczynski, Warsaw University of Technology, Poland

Reviewed by:

Roopa Biswas, Uniformed Services University of the Health Sciences, United States

Copyright © 2022 Bensussen, Valcarcel, Álvarez-Buylla and Díaz. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Elena R. Álvarez-Buylla, elenabuylla@protonmail.com; José Díaz, biofisica@yahoo.com

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.