Peripheral Blood-Based Biopsy for Breast Cancer Risk Prediction and Early Detection
Farah J. Nassar
Ghada Chamandi
Mohamad Ali Tfaily
Nathalie Khoueiry Zgheib
Rihab Nasr- 1Department of Internal Medicine, Faculty of Medicine, American University of Beirut, Beirut, Lebanon
- 2Department of Anatomy, Cell Biology and Physiological Sciences, Faculty of Medicine, American University of Beirut, Beirut, Lebanon
- 3Department of Pharmacology and Toxicology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon
Among women, breast cancer (BC) is not only the most common cancer worldwide but also the leading cause of cancer death. Only 5–10% of breast cancer cases are attributed to inherited mutations (BRCA1, BRCA2, and other breast cancer susceptibility genes). Breast cancer incidence has been rising particularly in young women who are not eligible for mammography, and it has been acting as a burden especially in developing countries that lack screening and awareness programs. For this reason, research has shifted to use minimally invasive liquid biopsies especially blood-based biomarkers with potential value for breast cancer risk prediction and early detection. This mini-review will tackle the different blood-based biomarkers focusing mainly on circulating miRNA, circulating proteins, cell-free nucleic acids, methylation patterns, and exosomes. It also introduces the potential opportunities for the clinical use of these blood-based biomarkers for breast cancer risk prediction.
Introduction
Breast cancer (BC) is the second most common cancer worldwide, with an incidence and mortality of 2,088,849 and 626,679, respectively in 2018. These alarming numbers are expected to continue rising by the year 2040 (1), hence the need to develop newer strategies for early detection and predisposition to BC. Predisposition to BC is not solely dependent on one risk factor; thus several BC risk assessment models were developed for that purpose. Regarding early detection, several randomized trials showed that screening can decrease BC burden and mortality, with a 0.74 relative risk of mortality among women who underwent mammography compared to those who did not, particularly for the age groups between 50 and 74 years (2–4). The selection of screening age depends on the age of BC onset in each population as well as the poor sensitivity of this screening method before the age of 40 (5, 6). Notably, the median age of BC diagnosis in developing countries remains a decade lower than that of Western Europe and the United States, which is 62 years (7, 8). For example, 70% of BC patients in Sub-Saharan Africa present with BC before the age of 50 years, making mammography a poor screening tool for the majority of this population (8–10). In addition to that, mammography can cause discomfort, overdiagnosis, and false-positive results accompanied by patient distress and anxiety (6). Imaging based diagnostic tools are also expensive and may not have the same performance and quality everywhere as well as may not be available equally for all populations especially people residing in rural areas.
Therefore, investigators shifted their scientific focus toward developing novel minimally invasive methods for early BC detection and risk prediction. Recently, liquid biopsy is the measurement of markers from easily accessible biologic fluids such as saliva, urine, and peripheral blood has become an attractive and increasingly investigated field of research. It was first introduced by Diaz et al. (11) in 2014 for the detection and examination of circulating tumor DNA in the blood. Then, its use was extended for the analysis of other circulating biomarkers such as microRNAs, exosomes, cell-free DNA, proteins, and methylated genes. There has been accumulating evidence for the potential clinical value of peripheral blood-based biopsy for cancer risk prediction and diagnosis, tracking of disease relapse and resistance, and stratification of patients for targeted therapy.
In this mini-review, we introduce the novel circulating blood-based biomarkers that are being investigated for either early BC detection or risk prediction. We focus on circulating microRNAs, proteins, cell-free nucleic acids, DNA methylation patterns, and exosomes (Figure 1).
Figure 1. Peripheral blood-based biopsy for breast cancer risk prediction and early detection.
Methodology
The research strategy for this review was guided by the main objective of reviewing the role of peripheral blood-based biopsy for BC risk prediction and early detection. The guiding specific question was: what empirical research is available on specific blood-based biomarkers in BC? This comprehensive research strategy targeted mainly journal articles published in English with no year specification. Only PubMed database was used with the following MeSH (Medical Subjects Headings) key terms.
(1) breast neoplasms AND microRNA
(2) breast neoplasms AND circulating AND protein
(3) breast neoplasms AND circulating AND DNA/RNA/lnRNA
(4) breast neoplasms AND circulating AND DNA AND methylation
(5) breast neoplasms AND exosomes.
Following this, the compiled abstracts were discussed among the research team. Only articles that were on human samples and concerned with BC risk prediction and early detection were exported to EndNote software.
Circulating microRNA
microRNAs (miRNA) are small non-coding RNA that regulate gene expression at the post-transcriptional level (12). miRNAs can act as oncogenes or tumor suppressors; thus playing an important role in tumor pathogenesis (13). As such, different miRNAs were shown to be dysregulated in cancer tissues, especially in BC as compared to normal tissues (14, 15). Moreover, miRNA dysregulation may be reflected in the biological fluids of BC patients including serum, plasma, and whole blood. miRNA are easily quantifiable, stable and resistant to degradation in the extracellular environment, hence supporting their potential role as biomarkers for BC screening and diagnosis (16, 17).
Dysregulation of circulating miRNA was noted in women who were at risk of developing BC. miR-144-3p, miR-451a, and miR-144-5p were found to be upregulated, while miR-708-5p was found to be downregulated in prospectively collected PBMC of 20 women who were unaffected at the time of recruitment and later diagnosed with breast cancer, as compared to 20 unaffected control women. However, these results failed to be confirmed using quantitative reverse transcription polymerase chain reaction (RT-PCR) in a validation set (18). Another study worth noting found that miR-195-5p and miR-495 are downregulated in PBMC of BC patients compared to healthy subjects, with a 77.8 and 100% sensitivity and 100 and 66.7% specificity, respectively, enabling them to be valuable diagnostic tools (19). It was not until 2009 when Zhu et al. (20) demonstrated that miRNA deregulation can also be detected in the serum of BC patients. In a following prospective cohort study on 205 cases of BC matched with 205 controls from the Sister Study Cohort with all recruited women BC free at the time of enrollment, global miRNA expression patterns revealed 21 differentially expressed miRNAs in the serum of BC patients when compared to healthy subjects (21). Several of these dysregulated miRNA such as the downregulated miR-99a-5p (22), miR-4634, miR-6875-5p (23), miR-18a, and miR-139-5p (24) or the upregulated miR-1246, miR-1307-3p, miR-6861-5p (23), and miR-21 (22) were later validated to be promising serum biomarkers for BC detection. In a meta-analysis by Li et al. (25), diagnosing BC by measuring serum miR-21 levels were found to be associated with high sensitivity and specificity of 0.79 and 0.85, respectively.
Even though several candidate miRNAs were individually studied as potential biomarkers for BC detection, they all failed to replace currently available detection models. This is due to the absence of standardization in the pre-analytical variables such as sample processing, storage, and handling, as well as data normalization strategy for miRNA quantification. This led several investigators to assess early detection with combinations of different miRNAs in the body fluids, an endeavor that translated into promising results in terms of sensitivity and specificity. For example, a study showed that selected miRNA signatures (such as in miR-21-3p, miR-21-5p, and miR-99a-5p) from miRNA profiles of 409 early breast cancer patients and 87 healthy controls from The Cancer Genome Atlas database were successfully validated as serum miRNA signatures with a diagnostic sensitivity and specificity of 97.9 and 73.5%, respectively (22). Also, a large cohort study investigated a combination of five miRNAs (miR-1246, miR-1307-3p, miR-4634, miR-6861-5p, and miR-6875-5p) in sera of 1,206 BC patients using microarray for expression analysis and quantitative RT-PCR for validation. This combination was shown to have a sensitivity of 97.3%, a specificity of 82.9%, and an accuracy of 89.7%, with the potential to detect early BC and to differentiate it from other possible tumors (23). As for plasma, other combinations of miRNAs were also able to detect BC with high sensitivity (26). These combinations included miR-192-5p/miR-382-5p and miR-192-5p/miR-574-5p (26).
Besides their growing role in early detection of BC, miRNAs have been evaluated as potential circulating biomarkers to predict BC risk. As such, a study measured serum miRNA deregulation in 48 patients at high risk of developing BC, 24 of whom eventually developed the disease. A panel of 6 miRNA showed an ability to predict the risk of BC with high accuracy and precision (27). Nevertheless, and despite these encouraging results, more studies are needed to investigate circulating miRNA's role in BC risk prediction.
Circulating Proteins
Several tumor proteins are detected in circulation though their origin is not known; however, only a few of them were shown to be clinically useful biomarkers in BC. The most currently measured circulating tumor protein markers are Carcinoembryonic antigen (CEA) and Cancer antigen (CA) 15-3 (also known as MUC1). These are however more useful for assessment of BC prognosis and recurrence rather than diagnosis since they lack specificity and sensitivity for low-volume disease (28, 29).
Recently, 8-hydroxy-2'-deoxyguanosine (8-OHdG), a nucleic acid damage marker due to oxidative stress, was reported to be a potential circulating biomarker for early detection of BC by two studies conducted on two different ethnic groups (Spain and Saudi Arabia). For instance, blood levels of 8-OHdG were significantly higher in women with BC group as compared to healthy women. The same pattern of 8-OHdG was observed with another diagnostic marker, which is cancer antigen CA 15-3 (30, 31). Moreover, in a prospective study including 2,835 cases and 3,122 matched controls from 10 cohorts, circulating anti-Müllerian hormone that is usually produced by ovaries also correlated with BC risk, particularly with ER+/PR+ tumors, with a 60% higher risk for women in the top quartile as compared to the bottom quartile of anti-Müllerian blood concentration (32).
Other circulating proteins under active investigation include the circulating adipose fatty acid-binding protein (A-FABP) that was recently shown to promote the development of BC in obese patients (33). Also, adipose metabolism has been linked to BC risk as plasma concentrations of adipose-derived fatty acid-binding protein 4 (FABP4) were found to be higher in 98 BC patients when compared to 96 healthy controls (34). Other protein regulators involved in bone resorption such as the Receptor Activator of NF-kB Ligand (RANKL), its receptor RANK, and the natural antagonist osteoprotegerin (OPG) were also found to be involved in BC (35–37). For instance, high serum levels of RANKL and RANKL/OPG ratios were reported in postmenopausal women at high risk for BC (38). Another study identified high serum OPG levels to be mainly associated with increased risk for ER- BC (39). On the other hand, a large scale investigation with a cohort of 1,976 incident invasive BC cases, of which 1,598 were ER+, showed limited evidence for correlating circulating RANKL levels with BC risk (40). Notably, and despite the availability of a myriad of BC studies in the proteomics literature (41, 42), the field is still lacking invalidated protein markers for both BC risk prediction and early detection.
Cell-Free Nucleic Acids
In 1977, cell-free DNA (cfDNA) was first reported in the serum of cancer patients after surgery and/or chemotherapy, and its concentration varied depending on the response to therapy (43). Later in 1989, a detectable amount of cfDNA was found in the plasma of cancer patients as compared to that of normal subjects (44). The origin of this extracellular DNA was shown to be mainly from the apoptosis and necrosis of degenerating cells in tumor tissue (45). cfDNA could be analyzed for specific genetic alterations including microsatellite alterations, allelic imbalance, translocations, mutations, and presence of viral genes (46, 47).
PIK3CA is the most commonly evaluated mutation detected in BC and occurring at a frequency of 20–45%. For instance, a prospective study assessed cfDNA PIK3CA mutations in the plasma of early BC patients before and after breast surgery and detected PIK3CA mutations preoperatively with 93.3% sensitivity and 100% specificity (48). Also, a meta-analysis that evaluated the overall diagnostic performance of cfDNA for PIK3CA mutation detection in BC from five different studies concluded that cfDNA PIK3CA mutation has a pooled sensitivity and specificity of 86 and 98%, respectively, with highest diagnostic accuracy in metastatic BC (49). More recently, next-generation sequencing of cfDNA in plasma of 100 women pretreated for advanced BC revealed the presence of a landscape of somatic mutations in different genes, such as TP53, PIK3CA, ESR1, and NOTCH1, in different subtypes of advanced BC (50). These results underscore the fact that BC is a heterogeneous disease, hence several mutations could be present, and researchers ought to analyze combinations of multiple cDNA targets.
Other recently studied cfDNA biomarkers for early BC detection are LINE1 and ALU. These are transposable elements that were referred to as “junk DNA” in the past. A pilot study showed that LINE1 copy number is significantly higher in the serum of 36 BC patients as compared to 29 healthy subjects (51). Similarly, serum ALU115 levels and ALU247/115 index or ratio were significantly higher in 40 patients newly diagnosed with BC patients as compared to 40 healthy controls. Serum ALU247/115 index or ratio was the best in terms of sensitivity, specificity, positive and negative prediction values, and total efficiency of BC diagnosis when compared to ALU115 levels and serum concentration of CEA and CA15 proteins. Notably, that improved sensitivity (97.5%) and negative prediction values (96.4%) were attained when all of the latter biomarkers were combined (52). Another study identified plasma cfDNA ALU-247, ALU-115, and DNA integrity (ratio between ALU 247 and 115) as potential biomarkers for BC diagnosis upon evaluating them in 40 BC patients and 10 healthy volunteers (53).
In addition to DNA, cfRNA can be found in the circulation. For example, long non-coding RNA (lncRNA), has also been examined as a potential biomarker for BC early detection. As such, large intergenic non-coding RNA-ROR (lncROR) measured in 96 plasma samples from BC patients had a high sensitivity (80.0%) and specificity (73.3%) for BC detection, and these values were greater than those of CEA and CA15-3 measured from the same patients (54). Similarly, two other lncRNA, H19, and HOX transcript antisense intergenic ribonucleic acid (HOTAIR), were identified as promising markers for BC detection in plasma (55, 56).
Circulating DNA Methylation Patterns
DNA methylation is one of the hallmarks of epigenetic modifications associated with cancer. Several studies on DNA methylation in cancer have utilized cell-free DNA from plasma and serum to assess differences in methylation levels between BC patients and healthy controls (57). For example, significant DNA hypermethylation of APC and RARβ2 were detected in the serum of patients with malignant BC as compared to serum from subjects with benign lesions and healthy controls, with both sensitivities and specificities of these two methylated genes being superior to traditional tumor markers (CEA and CA 15-3) for BC detection (58). Another study revealed that the hypermethylation of at least one of these genes (APC, GSTP1, RASSF1A, and RARβ2) can be detected with a sensitivity of 62% and a specificity of 87% in BC (59). Another study examined the promoter methylation of six genes, SFN, P16, hMLH1, HOXD13, PCDHGB7, and RASSF1a in the serum of 749 subjects including patients with BC, patients with benign breast diseases, and healthy women. Results indicated that methylation analysis of the six-gene panel had significantly high sensitivities of 82.4 and 79.6% and specificities of 78.1 and 72.4% in the diagnosis of BC when compared to subjects with benign disease and healthy controls, respectively (60). In contrast, a recent paper showed that there were no significant differences in the levels of methylation of RASSF1a and ATM in peripheral blood DNA of 229 sporadic BC patients compared to that of 151 healthy controls (61). Other investigators evaluated DNA methylation of 14-3-3 σ promoter in circulation and produced controversial results (62, 63). Results from all of the above-described studies highlight the fact that the measurement of circulating DNA methylation patterns requires further investigation before being translated to clinical practice in BC (57).
Circulating Exosomes
Exosomes are membrane-derived nanoscale vesicles that are actively released by most cells into the circulation (64). The content of these tiny particles, which are also shed by cancer cells, includes DNA, lipids, messenger RNA, microRNA, and other small regulatory RNA. Relevant molecular information can be obtained by analyzing exosomes' content. Exosomes and their cargo have been shown to play an important role in cell-cell communication between the tumor and the stroma, and in establishing the pre-metastatic niche. They demonstrate a promising blood-based biomarker for early cancer detection (65–67), as well as for BC since much higher levels of exosomes with altered cargo were found in sera of BC patients relative to healthy subjects (68).
It was also reported that exosomes released by BC cells into biological fluids contain important information about the primary tumor (69). For example, miRNA-containing exosomes (Exo-miR), an important and abundant exosomal cargo, were shown to potentially represent an ideal biomarker of disease onset (70, 71). As such, the diagnostic value of serum exosomal miRNA in BC was studied (72), nevertheless, no exosomal analysis was reported in subjects with a high risk of developing cancers. However, Exo-miR-233-3p was able to discriminate between ductal carcinoma in situ and infiltrating ductal cancer, suggesting its potential role for the early detection of invasive BC (73). Moreover, exosomal miR-21 and miR-1246 were found to be higher in plasma of BC patients or mice transplanted with patients derived breast tumors as compared to healthy controls (74). Furthermore, there exists a differential expression of exosomal miR based on the tumor molecular subtypes. For instance, higher levels of exosomal miR-373 were indicative of triple-negative BC (75). In addition to miRNAs, the exosomal proteins fibronectin and developmental endothelial Locus-1 (Del-1) are promising biomarkers for early-stage BC (76, 77). Although circulating exosomes have emerged as potential candidates for a non-invasive biomarker for BC, recent efforts have focused on the detection of metastasis and assessment of disease prognosis as well as on optimizing their isolation. Few promising exo-miR candidates for early detection were reported (71). However, until now, there is no compelling evidence for the potential clinical utility of exosomes for BC risk assessment.
Conclusions
In order to identify BC predisposition of healthy subjects, numerous BC risk prediction tools that take into consideration multiple risk factors are available (78, 79). Yet, only a few examples of peripheral blood-based biopsy have been evaluated for BC risk assessment. As for BC screening and early detection, several blood-based biomarkers are likely to be clinically used as easily accessible and minimally invasive substitutes or supplements to routine screening tests such as mammography. A comparison in the sensitivity and specificity of various blood- and serum-based biomarkers to imaging methods in the diagnosing and screening for breast cancer is required. Based on the literature (Table 1), several biomarkers have better sensitivity and specificity than imaging-based methods. For instance, miR-495 alone, a miRNA panel of miR-21-3p, miR-21-5p, and miR-99a-5p, a miRNA panel of miR-1246, miR-1307-3p, miR-4634, miR-6861-5p, and miR-6875-5p, PIK3CA proteins, ALU115 combined with ALU247/115 cfDNA, CEA, and CA15-3, methylated APC and RARβ2, as well as Del-1 exosomes, appear to have the highest sensitivities, even as compared to the current imaging screening standards, making them potential screening tool for early breast cancer. On the other hand, miR-195-5p, mutated PIK3CA, and methylated APC and RARβ2 and 14-3-3 σ promoter have the highest specificities. This makes them powerful diagnostic tools for breast cancer, especially for PIK3CA protein, and methylated 14-3-3 σ promoter as the evidence is based on meta-analyses. Further studies and meta-analyses are needed to provide stronger evidence for these data before adopting these biomarkers for screening and early detection of breast cancer.
Table 1. Sensitivities and specificities of different breast cancer detection methods (Imaging and blood-based biomarkers).
The field of liquid biopsy research is still in its infancy but it is evolving rapidly and providing a rich space for discovery. To speed up the process of discovery and clinical translation, research should resolve some of the overarching challenges. Most of the studies on blood based biomarkers are retrospective case-control with a small sample size and with variable methodologies of sample handling and storage. Hence, studies should examine biomarkers in large ethnically diverse populations as well as prospectively measuring levels in healthy subjects especially those with a high risk of developing cancer well before the appearance of symptoms. Furthermore, the deficiency of standardized and robust methods for sample isolation, quantification and analysis, and the lack of benchmarking the sensitivity and specificity of biomarkers in large and ethnically diverse BC cohorts in comparison not only to healthy subjects but also to other cancer patients (84). By overcoming these drawbacks, the clinical application of these small molecules will surely amaze the world and save lives due to more accurate risk prediction and earlier detection of BC.
Author Contributions
All authors contributed to the writing and critical reviewing of the article.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
We acknowledge the Medical Plan Practice (MPP) for the financial support. RN is a member of the International Breast Cancer and Nutrition.
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Keywords: breast cancer, liquid biopsy, early detection, risk prediction, microRNA, cfDNA, exosome, methylation patterns
Citation: Nassar FJ, Chamandi G, Tfaily MA, Zgheib NK and Nasr R (2020) Peripheral Blood-Based Biopsy for Breast Cancer Risk Prediction and Early Detection. Front. Med. 7:28. doi: 10.3389/fmed.2020.00028
Received: 04 April 2019; Accepted: 20 January 2020;
Published: 11 February 2020.
Edited by:
Victoria Seewaldt, Beckman Research Institute, City of Hope, United StatesReviewed by:
Eron Grant Manusov, University of Texas Rio Grande Valley Brownsville, United StatesEric C. Dietze, City of Hope National Medical Center, United States
Copyright © 2020 Nassar, Chamandi, Tfaily, Zgheib and Nasr. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Nathalie Khoueiry Zgheib, nk16@aub.edu.lb; Rihab Nasr, rn03@aub.edu.lb