In the original article, there was a mistake in the provided supplementary material for the datasets Dash (Dash et al., 2017), 10X (10XGenomics, 2020), and newVdj (Bagaev et al., 2020) as published. The mistake derived from an imprecision in the method used to reconstruct the complete amino sequence for the TCRs from the V/J gene and CDR3 information, which impacted a small proportion of the sequences in these sets (between 0.5 and 7% depending on the set). The wrong sequences have now been either removed or corrected. The corrected version of these datasets is provided as supplementary material.
The authors apologize for this error and state that this does not change the scientific conclusions of the article in any way. The original article has been updated.
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References
1
10XGenomics (2020). A New Way of Exploring Immunity - Linking Highly Multiplexed Antigen Recognition to Immune Repertoire and Phenotype. 10XGenomics.
2
BagaevD. V.VroomansR. M. A.SamirJ.StervboU.RiusC.DoltonG.et al. (2020). VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Res.48, D1057–D1062. 10.1093/nar/gkz874
3
DashP.Fiore-GartlandA. J.HertzT.WangG. C.SharmaS.SouquetteA.et al. (2017). Quantifiable predictive features define epitope-specific T cell receptor repertoires. Nature547, 89–93. 10.1038/nature22383
Summary
Keywords
T cell receptor, antigen prediction, TCR-pMHC binding, homology modelling, T cell
Citation
Milighetti M, Shawe-Taylor J and Chain B (2022) Corrigendum: Predicting T Cell Receptor Antigen Specificity From Structural Features Derived From Homology Models of Receptor-Peptide-Major Histocompatibility Complexes. Front. Physiol. 12:790998. doi: 10.3389/fphys.2021.790998
Received
07 October 2021
Accepted
27 October 2021
Published
24 January 2022
Volume
12 - 2021
Edited and reviewed by
Tetsuya J. Kobayashi, The University of Tokyo, Japan
Updates
Copyright
© 2022 Milighetti, Shawe-Taylor and Chain.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Benny Chain b.chain@ucl.ac.uk
This article was submitted to Computational Physiology and Medicine, a section of the journal Frontiers in Physiology
Disclaimer
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.