CASE REPORT article

Front. Genet., 05 May 2023

Sec. Genetics of Common and Rare Diseases

Volume 14 - 2023 | https://doi.org/10.3389/fgene.2023.1102101

Case report: further delineation of AEBP1-related Ehlers–Danlos Syndrome (classical-like EDS type 2) in an additional patient and comprehensive clinical and molecular review of the literature

  • 1. Center for Medical Genetics, Shinshu University Hospital, Matsumoto, Japan

  • 2. Department of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan

  • 3. Division of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Japan

  • 4. Department of Dermatology, Dokkyo Medical University, Mibu, Japan

  • 5. Problem-Solving Oriented Training Program for Advanced Medical Personnel: NGSD (Next-Generation Super Doctor) Project, Matsumoto, Japan

  • 6. Department of Dermatology, Gunma University Graduate School of Medicine, Maebashi, Japan

  • 7. Research Center for Supports to Advanced Science, Shinshu University, Matsumoto, Japan

Abstract

The Ehlers–Danlos Syndromes (EDS), a group of hereditary connective tissue disorders, were classified into 13 subtypes in the 2017 International Classification. Recently, a new subtype of EDS called classical-like EDS type 2 (clEDS2), which is caused by biallelic variants in the adipocyte enhancer binding protein 1 (AEBP1) gene, was identified. We describe the 11th patient (9th family) with clEDS2, who was complicated by a critical vascular event (superior mesenteric artery aneurysm and rupture). A next-generation sequencing panel-based analysis revealed compound heterozygous variants in AEBP1: NM_001129.5:c.[2296G>T]; [2383dup], p.[(Glu766*)]; [(Glu795Glyfs*3)]. Light microscopic analyses showed increased interfibrillar spaces in the reticular dermis, a disorganized arrangement of collagen fibers, and decreased collagen content. An electron microscopic analysis showed the presence of collagen fibrils with irregular contours (flower-like appearance) and small collagen fibrils. A biochemical analysis showed reduced secretion of type I and type III procollagen. Clinical and molecular features of the current patient and all previously reported patients were reviewed comprehensively. Manifestations noted in most cases (>80%) included skin features (hyperextensibility, atrophic scars, easy bruising, excessive skin/skin folding, delayed wound healing, translucency, piezogenic papules), skeletal features (generalized joint hypermobility, dislocations/subluxations, pes planus), dental abnormalities, and neuromuscular abnormalities. Critical complications, each occurring in a single case, included superior mesenteric artery multiple aneurysm and rupture, aortic root dilation requiring surgery, and bowel rupture. Most AEBP1 variants were predicted or experimentally confirmed to lead to nonsense-mediated mRNA decay, whereas one variant resulted in a protein that was retained intracellularly and not secreted. Clinical, molecular, pathological, and biochemical features of the current patient, as well as a review of all previously reported patients, suggest the importance of the aortic carboxypeptidase-like protein encoded by AEBP1 in collagen fibrillogenesis.

Introduction

The Ehlers–Danlos Syndromes (EDS) are a group of hereditary connective tissue disorders (HCTDs) characterized by skin hyperextensibility, joint hypermobility, and tissue fragility. They were classified into 13 subtypes based on symptoms and causative genes in the 2017 International Classification (). In 2018, identified biallelic variants in the adipocyte enhancer binding protein 1 (AEBP1) gene in patients displaying EDS-like features that were considered to represent a new subtype of EDS and were tentatively named classical-like type 2 (clEDS2; MIM #618000) (). To date, 10 patients from eight families have been described (; ; ; ; ; ; ; ).

We report here an additional patient with clEDS2 who had novel variants in AEBP1 and was complicated by a critical vascular event.

Case description and molecular, pathological, and biochemical analysis

The patient, a 45-year-old Japanese woman, was the second child of non-consanguineous parents. No skin hyperextensibility, fragility, or joint hypermobility were noted in her mother, elder sister, or two daughters. She was a preterm and low-birth-weight (1,980 g) infant. The patient had bilateral congenital hip dislocation for which she underwent fixation with a brace, experienced repetitive episodes of skin lacerations and subcutaneous hemorrhage after minor trauma, and had marked joint laxity, with repetitive sprains caused by unstable ankle joints. In her early 20 s, she was suspected to have EDS. Intractable hair loss has been her major physical concern since around that age. She also had spinal disc herniation. At the age of 36 years, she developed massive intraabdominal hemorrhages caused by rupture of the superior mesenteric artery, which were associated with multiple aneurysms and were treated with catheter embolization. Thin translucent skin was noted (Figure 1A-a).

FIGURE 1

When the patient was referred to us at the age of 45 years, she exhibited the following characteristics: hair with a kinky texture and generalized thinning; a high palate and multiple dental caries; hyperextensible and translucent skin (Figure 1A-a, b); skin striae in the lower extremities, with atrophic scars (Figure 1A-c); soft soles; an umbilical hernia (Figure 1A-d); pes planus (Figure 1A-e); and generalized joint hypermobility (Beighton score 8/9) (Figure 1A-f). Radiological examination showed no spinal deformities. There had been no episodes of dislocations or musculoskeletal pain. No aortic root dilatation or valve abnormalities were detected on echocardiography. She had high myopia, but no hearing impairment.

Genomic DNA was extracted from peripheral blood using a QIAamp DNA Blood Mini Kit on a QIAcube (Qiagen, Valencia, CA, United States). A next-generation sequencing (NGS) panel-based analysis was performed on an Ion Torrent system (Ion Chef and Ion GeneStudio S5, Thermo Fisher Scientific, Waltham, MA, United States) using an Ion AmpliSeq custom panel for 52 genes associated with EDS and other HCTDs (Supplementary Table S1). Detected variants were annotated by SnpEff and SnpSift (https://snpeff.sourceforge.net/) using the processed vcf file of the Genome Aggregation Database (gnomAD) v2.1.1 (https://gnomad.broadinstitute.org/downloads), ToMMo 8.3KJPN Genotype Frequency Panel (v20200831) (https://jmorp.megabank.tohoku.ac.jp/202008/downloads#variant) (), ClinVar (ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh37/clinvar_20220328), dbNSFP3.4c and dbscSNV1.1 (https://sites.google.com/site/jpopgen/dbNSFP). Detected variants were evaluated in accordance with the 2015 American College of Medical Genetics and Genomics/Association for Molecular Pathology (ACMG/AMP) guidelines () and the ClinGen Sequence Variant Interpretation Working Group recommendations (SVI recommendations). Integrative Genomics Viewer (IGV) was used to visualize read alignments (Broad Institute, Cambridge, MA, United States). The NGS panel-based analysis revealed a non-sense variant c.2296G>T,p.(Glu766*) and a frameshift variant c.2383dup,p.(Glu795Glyfs*3) in AEBP1 (NM_001129.5), which were confirmed by Sanger sequencing (Figure 1B). The IGV revealed that the two variants were observed in trans (Figure 1C). The nonsense variant was registered in 8.3KJPN (1/16758, MAF = 0.0001, no homozygote) and the frameshift variant was registered in 8.3KJPN (1/16754, MAF = 0.0001, no homozygote). Both variants were classified as pathogenic (PVS1, PM2_Supporting, and PM3), in accordance with the 2015 ACMG/AMP guidelines and SVI recommendations.

Hematoxylin and eosin staining of a skin specimen obtained by a biopsy performed at the age of 36 years showed increased spaces between collagen fibers and disorganized orientations of these fibers in the lower and middle layer of the dermis (Figure 1D-b) compared with control (Figure 1D-a). Masson’s trichrome staining revealed decreased collagen fibers (Figure 1D-d) compared with control (Figure 1D-c). Elastica van Gieson staining showed prominent elastic fibers due to the decreased numbers of collagen fibers (Figure 1D-f) compared with control (Figure 1D-e). An ultrastructural analysis using transmission electron microscopy of the skin specimen revealed the presence of collagen fibrils with irregular contours (flower-like appearance) and small size under the cross-sectional view (Figure 1E). Measurement of procollagen production from cultured skin fibroblasts was performed as described previously (). Briefly, dermal fibroblasts from the patient were incubated with 3H-proline for 24 h. Labeled proteins secreted into the culture medium were digested with pepsin and analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis/fluorography. Amounts of type I and type III procollagen were both reduced compared with an age- and sex-matched individual who served as a control (Figure 1F).

Discussion

We have identified and described a 11th patient (9th family) with clEDS2, who was found to have novel compound heterozygous pathogenic variants in AEBP1. Detailed and comprehensive clinical and molecular features of all previously reported patients and the current patient are shown in Table 1.

TABLE 1

Family no.IIIIIIIVVVIVIIVIIIIX
Patient No.1234567891011
Citation(s)This report
Age at the time of report (years)1224353358213938532645
SexFemaleMaleMaleMaleMaleFemaleFemaleMaleFemaleMaleFemale
EthnicityMiddle EasternMiddle EasternCaucasianCaucasianCaucasianCaucasianGreekGreekItalianNAJapanese
AEBP1 variant (NM_001129.5)c.[1630 + 1G>A];[1630 + 1G>A]c.[1630 + 1G>A];[1630 + 1G>A]c.[1470del];[1743C>A]c.[1320_1326del];[1320_1326del]c.[362dup];[362dup]c.[443dup];[1149_1150+2del]c.[917dup];[917dup]c.[917dup];[917dup]c.[1925T>C];[1925T>C]c.[2123_2124del];[2123_2124del]c.[2296G>T];[2383dup]
Protein alteration (NP_001120.3)p.[Val537Leufs*31];[Val537Leufs*31]p.[Val537Leufs*31];[Val537Leufs*31]p.[Asn490_Met495delinsLysAlaMetArgLysTrpTrpAlaProCysProGlySerTrpLeuCysSerHisCysLeuGlyGluGlyTrpAlaLeuArgGlyAlaGlySerThrAlaLeuArgProAlaSerProGln];[Cys581*]p.[Arg440Serfs*3];[Arg440Serfs*3]p.[(Glu122Glyfs*16)];[(Glu122Glyfs*16)]p.[(Ala149Glyfs*57)];[Val383_Gln420del]p.[Tyr306*];[Tyr306*]p.[Tyr306*];[Tyr306*]p.[(Leu642Pro)];[(Leu642Pro)]p.[(Val708Alafs*5)];[(Val708Alafs*5)]p.[(Glu766*)];[(Glu795Glyfs*3)]
Craniofacial featuresBilateral ptosis, webbed neck, low posterior hairline, sagging cheeks, large ears, narrow/high palateBilateral ptosis, webbed neck, low posterior hairline, sagging cheeks, large ears, narrow palateMicrognathiaAsymmetrical face, hypertelorism, low-set and posteriorly rotated ears with attached earlobes, thin and frizzled hair, partial alopecia, webbed neckMild ptosis, thinning hairAlopeciaNAAlopecia, high palate, elongated uvulaCleft palate, down-slanting palpebral fissures, epicanthus, deep set eyes, malar hypoplasia low set ears, micro/retrognathia, webbed neckThinning and kinky hair, high palate, narrow noseAlopecia or thinning hair
5/10 (50.0%)
Dental featuresAbnormal dental alignmentAbnormal dental alignmentRetains a single baby toothNABad tooth quality with severe cariesBad tooth quality with frequent cariesNANAPyorrhea, complete dental loss at age 14Multiple caries, periodontal diseaseMultiple caries8/8 (100%)
Cutaneous features
Skin hyperextensibility+++++++++++11/11 (100%)
Thin, translucent skinNANANA+++++++7/8 (87.5%)
Excessive skin++++++++++10/11 (90.9%)
/skin folding
Delayed wound healing+++++Mild++++10/11 (90.9%)
Atrophic scars+NA+++++++++10/10 (100%)
Easy bruising+NA+++++++++10/10 (100%)
Piezogenic papulesNANA++NANANANA++4/5 (80.0%)
Prematurely aged appearanceNANA− (Increased acrogeria-like skin wrinkles on hands and feet)NA+NA+++−(Acrogeria-like hand appearance)− (Acrogeria-like skin on hands)4/7 (57.1%)
OtherSacral dimpleDecubitus wounds on buttocksSkin striaeFragile skin lesions on the buttocksSkin fragility, subcutaneous spheroids, palmar callositiesSkin lacerations after minor trauma, skin striae, velvety skin
Skeletal features
Generalized joint hypermobility (Beighton score)+ (8/9)+ (NA)+ (8/9)+ (8/9)+ (NA)+ (9/9)+ (6/9)− (2/9)+ (5/9)+ (7/9)+ (8/9)10/11 (90.9%)
Congenital hip dislocation++2/11 (18.2%)
Other dislocationsInterphalangeal/hip/knee/ankleHip/knee/ankleDistal radioulnar jointShoulderElbowWristClavicular/knee/ankleShoulder/elbow/knee/ankle10/11 (90.9%)
SubluxationsShoulder/hipTemporomandibular/shoulder/elbow/thumb/hip/kneeMandibular+
Pectus excavatumNA++2/10 (20.0%)
Spine deformitiesNAThoracic scoliosis with degenerative disease and facet arthrosis of spineScoliosisKyphoscoliosisKyphoscoliosisScoliosis (mild)Scoliosis6/10 (60.0%)
Pes planus++++++Mild+++10/11 (90.9%)
Hallux valgus++++++6/11 (54.5%)
Hammertoes++++++6/11 (54.5%)
Osteopenia++++NANANA+NA5/7 (71.4%)
OtherDownsloping shoulders, severe degenerative disease requiring hip replacementMultiple ankle distortionsHip dysplasia, ankle sprains, drooping shouldersArachnodactyly, wrist and thumb signs, systemic score 8Hindfoot deformity, arachnodactyly, wrist sign, systemic score 7Patellar instability, gonarthrosis, rotator cuff disease, achilles tendinopathy, subacromial shoulder impingement, epitrochleitisShort stubby fingers, hips dysmetria, absence and hypoplasia of toesToe/elbow joint deformity, ankle instability, sprains
Neuromuscular featuresNeonatal hypotoniaMyopathyDelays in walking and acquisition of fine motor skillsNANAProgressive decreased muscle strength, inability to walk without supportNANANeonatal severe hypotonia, delays in walking and acquisition of fine motor skills, hypotrophy of the scapular girdleMild perinatal hypotonia, delayed motor development, unilateral hypoplasia of right pectoralis major muscle, diastasis rectiNA6/6 (100%)
Cardiovascular featuresMitral valve prolapseMild mitral regurgitation, bilateral stenosis of the carotids, aortic root dilationMild mitral valve prolapseVaginal hematoma after trauma, postural orthostatic tachycardia syndromeMitral valve prolapse, circular pericardial effusionVaricose veinsPeripheral artery disease (intermittent claudication, peripheral cyanosis, cold skin), varicose veinsMild regurgitation at tricuspid, pulmonary, and mitral valves, varicose veins, hematomaSuperior mesenteric artery aneurysm and rupture
Gastrointestinal featuresNANAChronic constipationBowel ruptureGastroesophageal reflux, esophageal spasms, dysphagia, bloated feeling, abdominal cramps/pain and episodes of constipation or diarrheaNANANA
HerniasUmbilical/ventral/inguinal herniaNALarge ventral hernia developed at surgical sites secondary to ruptured bowelHerniation of fat in the right armpitNA+Umbilical herniaInguinal herniaSpinal disc herniation, umbilical hernia7/9 (77.8%)
Urogenital featuresNANACryptorchidismNANAUrinary retention requiring catheterization, bladder cramps and urinary urgencyNACryptorchidismNACryptorchidism
Other featuresDiabetes mellitus, cellulitisImpaired temperature sensation, keratoconjunctivitis siccaElbow bursitis, hypertriglyceridemiaSpontaneous pneumothorax, myopia, tinnitusChronic fatigue, chronic widespread pain, mild myopiaStrabismus, astigmatism, myopiaVocal cord nodules, subcutaneous spheroids, multiple papules with follicular prominence, chronic fatigue, myopia, astigmatismMusculoskeletal back painMyopia

Detailed and comprehensive clinical and molecular features of all previously reported patients and the current patient.

AEBP1: adipocyte enhancer binding protein 1 gene; NA: not applicable; +: present; −: absent.

Dental abnormalities, skin hyperextensibility, atrophic scars, easy bruising, and neuromuscular abnormalities were observed in all patients whose data were available. Excessive skin/skin folding (90.9%), delayed wound healing (90.9%) generalized joint hypermobility (90.9%), dislocations/(sub)luxations (90.9%), pes planus (90.9%), translucent skin (87.5%), piezogenic papules (80.0%), hernia (77.8%), osteopenia (71.4%), spine deformities (60.0%), prematurely aged appearance (57.1%), hallux valgus (54.5%), and hammertoes (54.5%) were observed in more than half of the patients whose data were available. Decreased hair described as “thinning” or “(partial) alopecia” was observed in five patients, and was a major physical concern in the current patient. The current patient developed multiple aneurysms and a rupture in the superior mesenteric artery, which was treated with catheter embolization. Cardiovascular complications reported in the previous patients included mitral valve prolapse/regurgitation, tricuspid valve regurgitation, pulmonary valve regurgitation, varicose veins, and aortic root dilation requiring surgery. A bowel rupture occurred in one patient, requiring repeated attempts to re-anastomose the bowel and colostomy. This is the first report of skin lacerations, which occurred in the current patient, whereas skin fragility was only noted in two other patients. Heterozygous individuals appear to have no relevant symptoms.

Most reported AEBP1 variants were null variants, including nonsense, frameshift and splice site variants, predicted to lead to nonsense-mediated mRNA decay (NMD) (Table 1; Figure 1G). Some variants were experimentally confirmed to affect the gene product. In Patients 1 and 2, a homozygous splice site variant (c.1630 + 1G>A) led to activation of the cryptic 5′splice site within exon 13 and skipping of the last 22 bp of exon 13. The shift in reading frame (p.Val537Leufs*31) was predicted to lead to NMD. In Patient 3, a 1-bp deletion (c.1470del) in exon 12 in one allele led to the retention of intron 12 (p.Asn490_Met495delinsLysAlaMetArgLysTrpTrpAlaProCysProGlySerTrpLeuCysSerHisCysLeuGlyGluGlyTrpAlaLeuArgGlyAlaGlySerThrAlaLeuArgProAlaSerProGln) (). Its protein was retained intracellularly and not secreted (). A non-sense variant (c.1743C>A,p.Cys581*) in the other allele in Patient 3 was predicted to lead to NMD. In Patient 4, a homozygous frameshift variant (c.1320_1326del) led to a shift in reading frame (p.Arg440Serfs*3) (). No ACLP protein was detected by western blotting, suggesting NMD. In Patient 6, a 4-bp deletion (c.1149_1150+2del) in one allele led to the loss of the last 4 bp of exon 9 and skipping of exon 10, resulting in an in-frame deletion (p.Val383_Gln420del) (). A frameshift variant (c.443dup) in the other allele in Patient 6 was predicted to lead to NMD. The mRNA expression was significantly decreased, indicating that the AEBP1 transcript was unstable and/or prone to NMD.

In the current patient, light microscopic analyses showed increased interfibrillar spaces in the reticular dermis, a disorganized arrangement of collagen fibers and decreased collagen content, and a biochemical analysis showed reduced secretion of type I and type III procollagen. Electron microscopic analysis showed the presence of collagen fibrils with irregular contours (flower-like appearance) and small size. reported that light microscopy showed decreased collagen, while electron microscopy revealed the presence of irregular disrupted collagen fibrils. In their report, the discoidin domain, a highly conserved structural motif of ACLP, preferentially bound to collagen types I, III and V, and ACLP promoted the polymerization of type I collagen in vitro. reported electron microscopic observations that corresponded with those of and the current study, and a biochemical analysis that showed a normal electrophoretic pattern of procollagen types I, III and V. This biochemical analysis was performed on the medium of cultured skin fibroblasts to detect procollagen secreted from these fibroblasts. The discrepant results might be attributable to some functional differences between the variants reported by Syx et al. and the variants in the current patient, which could be related to the difference in the transcription status of these procollagen genes or in the secretion status of these types of procollagen. In view of all of these findings, ACLP protein is likely an important player in collagen fibrillogenesis.

In conclusion, the clinical findings and disease course in the current patient, together with the review of previously reported patients, paints a picture of the clinical similarities and variations in clEDS2. Furthermore, the biochemical and pathological findings in the current patient, in addition to the relevant findings in the previous patients, suggest the importance of ACLP in collagen fibrillogenesis. Further clinical, molecular, and pathophysiological studies are required to produce a more detailed and comprehensive delineation of this disorder.

Statements

Data availability statement

The datasets for this article are not publicly available due to concerns regarding participant/patient anonymity. Requests to access the datasets should be directed to the corresponding authors.

Ethics statement

The studies involving human participants were reviewed and approved by the Ethics Committee of Shinshu University School of Medicine. The patients/participants provided their written informed consent to participate in this study. Written informed consent was obtained from the participant/patient(s) for the publication of this case report.

Author contributions

TY performed all molecular experiments, interpreted the data, and wrote the first draft of the manuscript. TK conceived the work, organized the data collection, interpreted the data, and wrote the clinical part of the first draft. SH conducted the histological, biochemical, and ultrastructural investigations. SN, AU, and S-IM provided clinical data. TF and YT helped to perform molecular analysis. All authors participated in revision and approval of the manuscript.

Funding

This study was supported by the following: the Grant-in-Aid for Young Scientists (19K17795) (2019–2021) (TY), from The Japan Society for the Promotion of Science, Japan; Research on Intractable Diseases (09835303, 10801776, 11948954) (2009, 2010, 2011) (TK); the Research Program on Policy of Measures for Intractable/Rare Diseases (20316866) (2020–2022) (TK); Ministry of Health, Labour and Welfare, Japan; the Program for an Integrated Database of Clinical and Genomic Information (16818213) (2016–2020) (TK); the Initiative on Rare and Undiagnosed Diseases (IRUD) (21445007) (2018–2020) (TK); and the Japan Agency for Medical Research and Development (AMED).

Acknowledgments

We are grateful to the patients and their families for their cooperation during this study. We are also thankful to Mr. Kinichi Matsuyama (Department of Pathology, Dokkyo Medical University) for their technical support on the histological, biochemical, and ultrastructural investigations. Finally, we thank Michelle Kahmeyer-Gabbe, PhD, from Edanz Group (https://en-author-services.edanzgroup.com/) for editing a draft of this manuscript.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fgene.2023.1102101/full#supplementary-material

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Summary

Keywords

Ehlers-Danlos Syndrome, classical-like EDS type 2 (clEDS2), adipocyte enhancer binding protein 1 (AEBP1), aortic carboxypeptidase-like protein (ACLP), autosomal recessive, connective tissue disorders

Citation

Yamaguchi T, Hayashi S, Nagai S, Uchiyama A, Motegi S-I, Fujikawa T, Takiguchi Y and Kosho T (2023) Case report: further delineation of AEBP1-related Ehlers–Danlos Syndrome (classical-like EDS type 2) in an additional patient and comprehensive clinical and molecular review of the literature. Front. Genet. 14:1102101. doi: 10.3389/fgene.2023.1102101

Received

18 November 2022

Accepted

11 April 2023

Published

05 May 2023

Volume

14 - 2023

Edited by

Dimitra Kiritsi, University of Freiburg Medical Center, Germany

Reviewed by

Filippo Camerota, Sapienza University of Rome, Italy

Alexander Nyström, University of Freiburg Medical Center, Germany

Antonella Polimeni, Sapienza University of Rome, Italy

Updates

Copyright

*Correspondence: Tomomi Yamaguchi, ; Tomoki Kosho,

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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