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ORIGINAL RESEARCH article

Front. Genet.

Sec. Genomics of Plants and the Phytoecosystem

Volume 16 - 2025 | doi: 10.3389/fgene.2025.1659937

This article is part of the Research TopicFostering the Next Generation Crop: Systems and Synthetic Biology PerspectiveView all articles

Comprehensive Genetic Diversity Revealed in the Prebreeding RIL lines (O. sativa x O. rufipogon) with Enhanced Yield and Pigmented Grain Quality

Provisionally accepted
  • University of North Bengal, Siliguri, India

The final, formatted version of the article will be published soon.

Developing high-yielding rice varieties (Oryza sativa L.) is critical to ensure global food security. Narrow genetic base in the released rice varieties has make the improvement in plateaus. Considering the potentials of wild rice (Oryza rufipogon), two distinct RIL populations were developed through interspecific hybridization (BWF: Badshabhog x O. rufipogon and CWF: Chenga x O. rufipogon) to increase the genetic base via alien introgression of hidden genes. Genetic diversity was assessed through genetic variability parameters, broad sense heritability, Mahalanobis D2 test, and PCA using 15 agromorphological characteristics which indicated enhanced genetic variation. The first four principal components together accounted for 73.74% of the variability in BWF, and the first six PCs showed 71.90% cumulative variability in CWF (eigen value >1). The broad-sense heritability ranged from 74.42% to 99.87% for all traits in both the RILs. Single plant yield was positively correlated with grain per panicle, 1000 grain weight, grain length and panicle weight. The cluster analysis showed that grain per panicle, grain weight, kernel breadth and plant height were key yield contributing traits. Detection of petunidin 3-O glucoside through HR-LCMS-QTOF indicating that anthocyanin has been synthesized in the black grain RIL lines signifying nutritional improvement. Hence, underutilized wild rice contributed immensely to enhancing the genetic base of the RIL lines, with unusual genetic diversity associated with yield improvement and grain pigmentation. Prebreeding materials are the cornerstone of future rice improvement programs, and our materials can be efficiently utilized to develop resilient, productive, and nutritious pigmented rice varieties.

Keywords: Wild rice Oryza rufipogon, pre-breeding, RIL, widening genetic base, black ricenutritional properties, and anthocyanin pigment

Received: 04 Jul 2025; Accepted: 20 Aug 2025.

Copyright: © 2025 Roy and Shil. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Subhas Chandra Roy, subhascr2011@gmail.com

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