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CASE REPORT article

Front. Genet.

Sec. Genetics of Common and Rare Diseases

Volume 16 - 2025 | doi: 10.3389/fgene.2025.1688885

WHOLE-EXOME SEQUENCING REVEALS COMPOUND HETEROZYGOUS VARIANTS IN THE EIF2B5 GENE IN A FAMILIAL CASE OF VANISHING WHITE MATTER

Provisionally accepted
Sofia  SavySofia Savy1Francisco  A. MontesFrancisco A. Montes1Carola  L. GrossoCarola L. Grosso1Laura  E. LaróvereLaura E. Laróvere1Silene  M. Silvera-RuizSilene M. Silvera-Ruiz2Gerardo  H. CarroGerardo H. Carro1Guillermo  GuelbertGuillermo Guelbert2Adriana  BecerraAdriana Becerra2David  MoralesDavid Morales3Juan  Pablo NicolaJuan Pablo Nicola1*
  • 1National University of Cordoba, Córdoba, Argentina
  • 2Hospital de Ninos Santisima Trinidad, Córdoba, Argentina
  • 3Hospital Nuestra Señora de la Misericordia, Córdoba, Argentina

The final, formatted version of the article will be published soon.

Vanishing white matter (VWM) is a rare autosomal recessive leukodystrophy associated with pathogenic variants in any of the five genes (EIF2B1-5) that encode subunits of the eukaryotic translation initiation factor 2B (eIF2B). Here, we present a case of a 26-year-old female patient from a non-consanguineous Amerindian Bolivian family, with clinical and neuroimaging findings suggestive of early-onset VWM, characterized by slowly progressive neurological deterioration in the absence of ovarian disorder. Whole-exome sequencing revealed a novel pair of compound heterozygous variants in the EIF2B5 gene, confirming the diagnosis of leukodystrophy with VWM and bringing closure to a nearly 20-year diagnostic odyssey. The identified c.318A>T (p.Leu106Phe) and c.1688G>A (p.Arg563Gln) in the EIF2B5 gene were classified as pathogenic and likely pathogenic, respectively, according to the American College of Medical Genetics and Genomics. Complementary Sanger sequencing revealed that the variants co-segregated with the phenotype in the pedigree, providing strong evidence of autosomal recessive inheritance of the disease, and enabling the molecular diagnosis of two asymptomatic sisters with white matter lesions on neuroimaging. This case underscores the heterogeneous nature of VWM, and emphasizes the relevance of integrating a comprehensive clinical evaluation, brain magnetic resonance imaging, and genetic studies in the diagnosis of leukodystrophies.

Keywords: Leukodystrophy, Vanishing White Matter (VWM), Psychomotor developmental delay, Whole-exome sequencing, Eukaryotic translation initiation factor 2B (EIF2B), Loss-of-functionEIF2B5 variants

Received: 20 Aug 2025; Accepted: 16 Oct 2025.

Copyright: © 2025 Savy, Montes, Grosso, Laróvere, Silvera-Ruiz, Carro, Guelbert, Becerra, Morales and Nicola. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Juan Pablo Nicola, juan.nicola@unc.edu.ar

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