Frontiers in Genetics | Computational Genomics

Original Research

Published on 05 Mar 2024

Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types

in Computational Genomics

Paloma Lara
Socorro Gama-Castro
Heladia Salgado
Claire Rioualen
Víctor H. Tierrafría
Luis J. Muñiz-Rascado
César Bonavides-Martínez
Julio Collado-Vides

Frontiers in Genetics

doi 10.3389/fgene.2024.1353553

2,304 views
2 citations

Original Research

Published on 01 Mar 2024

Finding potential lncRNA–disease associations using a boosting-based ensemble learning model

in Computational Genomics

Liqian Zhou
Xinhuai Peng
Lijun Zeng
Lihong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1356205

3,118 views
12 citations

Original Research

Published on 29 Feb 2024

ACPPfel: Explainable deep ensemble learning for anticancer peptides prediction based on feature optimization

in Computational Genomics

Mingyou Liu
Tao Wu
Xue Li
Yingxue Zhu
Sen Chen
Jian Huang
Fengfeng Zhou
Hongmei Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1352504

4,028 views
13 citations

Original Research

Published on 29 Feb 2024

Establishment and analysis of artificial neural network diagnosis model for coagulation-related molecular subgroups in coronary artery disease

in Computational Genomics

Biwei Zheng
Yujing Li
Guoliang Xiong

Frontiers in Genetics

doi 10.3389/fgene.2024.1351774

2,064 views

Mini Review

Published on 28 Feb 2024

Mechanistic causes of sign epistasis and its applications

in Computational Genomics

Jinqiu Zhang
Feiyu Chen
Xianghua Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1366917

4,183 views
7 citations

Original Research

Published on 23 Feb 2024

DeepCBS: shedding light on the impact of mutations occurring at CTCF binding sites

in Computational Genomics

Yiheng Wang
Xingli Guo
Zhixin Niu
Xiaotai Huang
Bingbo Wang
Lin Gao

Frontiers in Genetics

doi 10.3389/fgene.2024.1354208

3,616 views
1 citation

Editorial

Published on 21 Feb 2024

Editorial: Unveiling novel aspects of SARS-CoV-2 to combat COVID-19

in Computational Genomics

Nimisha Ghosh
Indrajit Saha
Dariusz Plewczynski

Frontiers in Genetics

doi 10.3389/fgene.2024.1383640

1,601 views

Original Research

Published on 20 Feb 2024

Classifying breast cancer using multi-view graph neural network based on multi-omics data

in Computational Genomics

Yanjiao Ren
Yimeng Gao
Wei Du
Weibo Qiao
Wei Li
Qianqian Yang
Yanchun Liang
Gaoyang Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1363896

7,096 views
13 citations

Original Research

Published on 20 Feb 2024

Characterizing hedgehog pathway features in senescence associated osteoarthritis through Integrative multi-omics and machine learning analysis

in Computational Genomics

Tao Wang
Zhengrui Li
Shijian Zhao
Ying Liu
Wenliang Guo
Raquel Alarcòn Rodrìguez
Yinteng Wu
Ruqiong Wei

Frontiers in Genetics

doi 10.3389/fgene.2024.1255455

5,578 views
4 citations

Methods

Published on 13 Feb 2024

KNeXT: a NetworkX-based topologically relevant KEGG parser

in Computational Genomics

Everest Uriel Castaneda
Erich J. Baker

Frontiers in Genetics

doi 10.3389/fgene.2024.1292394

3,913 views
4 citations

Retraction

Published on 09 Feb 2024

Retraction: Relationship between serum TGF- β 1, MMP-9 and IL-1β and pathological features and prognosis in breast cancer

in Computational Genomics

Frontiers Editorial Office

Frontiers in Genetics

doi 10.3389/fgene.2024.1380853

1,957 views
1 citation

Retraction

Published on 09 Feb 2024

Retraction: Bioinformatics analysis based on crucial genes of endothelial cells in rheumatoid

in Computational Genomics

Frontiers Editorial Office

Frontiers in Genetics

doi 10.3389/fgene.2024.1380892

2,324 views

Original Research

Published on 08 Feb 2024

In silico identification of human microRNAs pointing centrin genes in Leishmania donovani: Considering the RNAi-mediated gene control

in Computational Genomics

Manei M. Aljedaie
Pravej Alam

Frontiers in Genetics

doi 10.3389/fgene.2023.1329339

4,020 views
2 citations

Original Research

Published on 07 Feb 2024

Revisiting genomes of non-model species with long reads yields new insights into their biology and evolution

in Computational Genomics

Nadège Guiglielmoni
Laura I. Villegas
Joseph Kirangwa
Philipp H. Schiffer

Frontiers in Genetics

doi 10.3389/fgene.2024.1308527

3,963 views
8 citations

Original Research

Published on 02 Feb 2024

Identification of potential therapeutic targets for COVID-19 through a structural-based similarity approach between SARS-CoV-2 and its human host proteins

in Computational Genomics

Alvea Tasneem
Armiya Sultan
Prithvi Singh
Hridoy R. Bairagya
Hassan Hussain Almasoudi
Abdulfattah Yahya M. Alhazmi
Abdulkarim S. Binshaya
Mohammed Ageeli Hakami
Bader S. Alotaibi
Alaa Abdulaziz Eisa

Frontiers in Genetics

doi 10.3389/fgene.2024.1292280

3,829 views
4 citations

Editorial

Published on 30 Jan 2024

Editorial: Artificial intelligence and bioinformatics applications for omics and multi-omics studies

in Computational Genomics

Angelo Facchiano
Dominik Heider
Margherita Mutarelli

Frontiers in Genetics

doi 10.3389/fgene.2024.1371473

3,584 views
1 citation