Abstract
According to a recent study, semantic similarity between concrete entities correlates with the similarity of activity patterns in left middle IPS during category naming. We examined the replicability of this effect under passive viewing conditions, the potential role of visuoperceptual similarity, where the effect is situated compared to regions that have been previously implicated in visuospatial attention, and how it compares to effects of object identity and location. Forty-six subjects participated. Subjects passively viewed pictures from two categories, musical instruments and vehicles. Semantic similarity between entities was estimated based on a concept-feature matrix obtained in more than 1,000 subjects. Visuoperceptual similarity was modeled based on the HMAX model, the AlexNet deep convolutional learning model, and thirdly, based on subjective visuoperceptual similarity ratings. Among the IPS regions examined, only left middle IPS showed a semantic similarity effect. The effect was significant in hIP1, hIP2, and hIP3. Visuoperceptual similarity did not correlate with similarity of activity patterns in left middle IPS. The semantic similarity effect in left middle IPS was significantly stronger than in the right middle IPS and also stronger than in the left or right posterior IPS. The semantic similarity effect was similar to that seen in the angular gyrus. Object identity effects were much more widespread across nearly all parietal areas examined. Location effects were relatively specific for posterior IPS and area 7 bilaterally. To conclude, the current findings replicate the semantic similarity effect in left middle IPS under passive viewing conditions, and demonstrate its anatomical specificity within a cytoarchitectonic reference frame. We propose that the semantic similarity effect in left middle IPS reflects the transient uploading of semantic representations in working memory.
1. Introduction
Previous studies of spatially selective attention have highlighted the contribution of the intraparietal sulcus (IPS) to spatial processing. IPS0/1, located in the descending segment of IPS, has been implicated in spatial-attentional enhancement of stimuli occurring in the contralateral attended hemifield (Yantis et al., 2002; Silver et al., 2005; Vandenberghe et al., 2005; Jerde et al., ). The middle IPS has been implicated in the coding of an attentional priority map, i.e., the spatial distribution of attentional weights (Vandenberghe and Gillebert, 2009, 2013). In middle IPS response amplitude has an asymptotic relationship with the number of items retained in working memory (Todd and Marois, 2004; Gillebert et al., ) which is mainly driven by the number of locations rather than the number of objects (Harrison et al., ).
Recently, it has become clear that features and objects held in working memory are also represented in the activity patterns in middle IPS (Ester et al., ; Bettencourt and Xu, ) as well as the identity of abstract shapes (Christophel et al., ). This challenges the spatially oriented view of middle IPS and suggests that the information contained in its response patterns may be far richer in content (for review see Freud et al., ). Even more surprisingly, Devereux et al. () reported semantic similarity effects in left IPS during a category naming task for six different categories (animals, clothing, insects, tools, vegetables, and vehicles). The fMRI similarity matrix for written words correlated with that obtained for pictures which led the authors to conclude that left middle IPS is involved in modality-invariant targeted retrieval of task-relevant semantic feature information (Devereux et al., ). This is surprising as there is no evidence of semantic processing deficits following IPS lesions.
The primary purpose of the current experiment was to determine whether the semantic similarity effect in middle IPS is replicable and how its localization compares to that of the visuospatial attention effects found previously in middle and posterior IPS (Vandenberghe et al., 2005; Molenberghs et al., ; Gillebert et al., ). A publicly available cytoarchitectonic reference frame was used to define the middle IPS region (Choi et al., ; Scheperjans et al., ,; Gillebert et al., ). hIP1 lies anteriorly in the depth of the IPS and hIP2 in the lower bank of IPS (Choi et al., ). Both areas are connected with the pars triangularis through the superior longitudinal fascicle (Uddin et al., 2010) and hIP2 also with the posterior part of the middle temporal gyrus (Uddin et al., 2010), hubs in the language and associative-semantic network (Vandenberghe et al., 2013; Liuzzi et al., ). hIP3 lies posteriorly and is connected with extrastriate cortex through the inferior fronto-occipital fascicle (Uddin et al., 2010). All three cytoarchitectonic areas are activated when subjects have to select between competing stimuli based on a prior spatial cue compared to single-grating trials, indicative of a role in spatially selective attention (Gillebert et al., ).
Effects in middle IPS (the sum of hIP1, hIP2, and hIP3) were directly compared to effects in posterior IPS. No cytoarchitectonic boundaries are available yet for posterior IPS and hence we defined this region based on coordinates derived from the contrast of contralateral vs. ipsilateral spatial attention in Vandenberghe et al. (2005). These coordinates are highly consistent between studies from different centers (Yantis et al., 2002; Gillebert et al., ) and correspond to what has been termed inferior IPS (Xu and Chun, 2006; Jeong and Xu, ) and IPS0/1 (Silver and Kastner, 2009). Semantic similarity effects in middle IPS were also compared to superior and inferior parietal regions. One of these regions, the left angular gyrus, has been classically implicated in semantic processing by univariate (for review see Binder et al., ) and multivariate pattern analyses (Bonner et al., ), serving as a positive control in the current study. To further assess the sensitivity and specificity of the analyses carried out in IPS, the same analyses were also performed in the ventral stream. To define the ventral stream region, we pooled cytoarchitectonically defined FG1, FG2 (Caspers et al., , ), FG3 and FG4 (Lorenz et al., ).
One of the main study objectives was also to test whether an apparent semantic similarity effect in left middle IPS could be explained by visuoperceptual similarities. When using pictures, semantic similarity and visuoperceptual similarity may covary. The visuoperceptual similarity structure of the study stimulus set was estimated in three, complementary ways: behavioral estimates of subjective perceptual similarity, a shallow Neural Network model based on ventral stream visuoperceptual processing characteristics (Riesenhuber and Poggio, ) and a Deep Convolutional Neural Network (DCN) model (Krizhevsky et al., ). The DCN has been trained on a publicly available set of 1.2 million images of 1,000 different classes of ImageNet (ILSVRC-2010) (Krizhevsky et al., ). It consists of eight learned layers: five convolutional layers followed by three fully connected layers (Krizhevsky et al., ). The early, convoluted layers are principally determined by low-level visuoperceptual similarity. The connected layers partly reflect the learned categorization, i.e., the categorical labels assigned to the pictures during supervised learning and derived from higher-order perceptual similarities.
In order to determine the degree of specificity for semantically meaningful content, we also included geons, i.e., artificial 3D shapes constructed based on a formal algorithm with no learned semantic associations (Kayaert et al., ). A set of geons has a well-defined similarity structure based on visuoperceptual similarity. Geons were included in the current study in order to determine whether similarity effects observed in left middle IPS were conditional on the semantic memory content of the stimuli presented.
To minimize any interference by explicit task demands, subjects had to fixate the central fixation point in the absence of a task. A priori, passive viewing may be thought to have lower sensitivity for semantic similarity effects than e.g., a task requiring explicit semantic retrieval such as the category naming task used by Devereux et al. (). It may be expected to detect only the most robust and consistent effects. The absence of a task has as its main advantage that any results obtained are not contingent on the specific task characteristics. The middle IPS is a hub of the multidemand network and its activity level is affected by a wide range of tasks (Duncan, ). A priori, the task performed may influence the outcome of a semantic similarity analysis, e.g., depending on semantic control demands or the semantic content that needs to be retrieved (Lambon-Ralph et al., ). Passive viewing avoids a contribution of the task factor, rendering interpretation in terms of stimulus representation more straightforward.
The stimuli were taken from a previous independent fMRI study of object identity and semantic similarity (Bruffaerts et al., ). In that fMRI study (Bruffaerts et al., ) three inanimate categories were used, tools, vehicles, and musical instruments, in common with two related patient lesion studies (Vandenbulcke et al., 2006; Bruffaerts et al., ). The fMRI stimulus set remained within the inanimate category because semantic similarity is estimated based on a feature applicability matrix. The features of the animate and the inanimate category are so widely divergent that collecting one feature applicability matrix for both animate and inanimate entities entails highly artificial and often nonsensical questions (De Deyne et al., ). We restricted the set to two rather than three inanimate subcategories, vehicles and musical instruments, since the similarity of the fMRI responses in the previous study (Bruffaerts et al., ) was higher for these two subcategories than for tools. Furthermore, this allowed for more replications per entity (n = 12 instead of 8) which is beneficial for fMRI similarity analysis at a fine-grained item-by-item level (Bruffaerts et al., ).
2. Materials and methods
2.1. Participants
Thirty-one healthy subjects participated in the first experiment where pictures of real objects were presented (19–27 years old, 7 men). This experiment will be referred to below as the “main experiment.” Fifteen other subjects participated in the experiment with geons (19–28 years old, two men). This experiment will be referred to below as the “geon experiment.” All subjects were native Dutch speakers and strictly right-handed as tested by the Oldfield Inventory (Oldfield, ). The volunteers were free of psychotropic or vasoactive medication and had no neurological or psychiatric history. All participants gave written informed consent in accordance with the Declaration of Helsinki. The Ethics Committee of the University Hospitals Leuven approved the experimental protocol.
2.2. Stimuli
2.2.1. Real-life stimuli
The real-life stimulus set consisted of pictures of 24 objects (12 musical instruments and 12 vehicles) identical to those used by Bruffaerts et al. (), presented against a black background (Figure 1A). Below the term “object” will be used to refer to the visual representation regardless of its size-on-the-screen, location or orientation, and the term “entity” for the concept represented by that image. Musical instruments and vehicles were matched for word frequency, word generation frequency, age of acquisition of the noun, familiarity, imageability and word length (Bruffaerts et al., ). For each entity, a prototypical color photograph was selected. Familiarity and visual complexity of the color pictures were matched between the musical instruments and the vehicles, according to the familiarity ratings of 38 and the complexity ratings of 33 other volunteers, respectively (Bruffaerts et al., ). The height or width of the picture, whichever was largest, was set to 5°.
Figure 1
The semantic similarity matrix for these objects was derived from a concept-feature matrix collected by De Deyne et al. (
To quantify the subjective visuoperceptual similarity between the pictures, 11 volunteers rated the similarity between each possible pair of objects following the procedure outlined by Op de Beeck et al. (
To characterize the visuoperceptual similarities of the pictures in a more formal mathematical manner, the Alexnet Deep Convolutional Neural Network (DCN) was applied to this stimulus set (Krizhevsky et al.,
Table 1
| Semantic similarity matrix | ||
|---|---|---|
| Spearman ρ | P-value | |
| Alexnet layer 1 | 0.0480 | 0.1876 |
| Alexnet layer 2 | 0.0861 | 0.0814 |
| Alexnet layer 3 | 0.0872 | 0.0739 |
| Alexnet layer 4 | 0.1557 | 0.0129 |
| Alexnet layer 5 | 0.1897 | 0.0069 |
| Alexnet layer 6 | 0.1974 | 0.0045 |
| Alexnet layer 7 | 0.2497 | 0.0002 |
| Alexnet layer 8 | 0.3681 | <0.0001 |
Deep learning.
Spearman correlation between the similarity matrices for the pictures for each of the eight layers of Alexnet and the semantic similarity matrix derived from the concept-feature matrix which is based on a feature generation task. Statistical significance was evaluated by 10,000 random permutation labelings. We applied a threshold of P < 0.05, corrected for the number of layers. Significant correlations are marked in bold.
As a third manner of characterizing the visuoperceptual similarities between the pictures, HMAX, a shallow Neural Network model based on higher ventral stream characteristics (Riesenhuber and Poggio,
To evaluate possible phonological effects during picture processing, a phonological similarity matrix was created for the picture names by means of phonological transcriptions derived from the Dutch version of the CELEX lexical database (Baayen et al.,
2.2.2. Geons
In order to evaluate whether effects seen in IPS for real-life objects were specific for objects with an obvious semantic memory content, we also evaluated the effects for artificial shapes, namely geons (Kayaert et al.,
Subjective visuoperceptual similarity was based on the ratings of 10 volunteers, analog to the subjective visuoperceptual similarity for real-life objects. There was a significant second-order correlation between the geon structural similarity matrix and the subjective perceptual similarity matrix (ρ = 0.359, P < 0.001).
2.3. Experimental design
Each of the two experiments consisted of 12 runs containing 24 trials. At the start of each trial, a central fixation point turned from white to red during 100 ms. After a delay of 200 ms, one out of 24 stimuli was displayed in one of the quadrants of the screen on the diagonal at 2.5° eccentricity for 150 ms, followed by an intertrial interval of 8,050 ms (Figures 1D,E). The location was varied between the four quadrants pseudorandomly and counterbalanced over runs. The subjects were instructed to passively view the stimuli while fixating. Central gaze fixation was monitored using infrared eye recording (Eyelink 1000, SR Research).
In the main experiment each entity was shown once per run (Figure 1D). In 17 out of the 31 subjects, in half of the replications the picture was mirrored around the vertical axis similarly to a previous study which tested the invariance of the representations for orientation along with size and location (Bruffaerts et al.,
2.4. MRI acquisition and preprocessing
Structural and functional images were acquired on a 3T Philips Achieva system (Best, The Netherlands) equipped with a 32-channel head coil. Structural imaging sequences consisted of a T1-weighted 3D turbo-field-echo sequence (repetition time = 9.6 ms, echo time = 4.6 ms, in-plane resolution = 0.97 mm, slice thickness = 1.2 mm). Functional images were obtained using T2* echoplanar images comprising 36 transverse slices (repetition time = 2 s, echo time = 30 ms, voxel size 2.75 × 2.75 × 3.75 mm3, slice thickness = 3.75 mm, Sensitivity Encoding (SENSE) factor = 2), with the field of view (FOV) (220 × 220 × 135 mm3) covering the entire brain. Each run was preceded by 4 dummy scans to allow for saturation of the Blood Oxygenation Level Dependent (BOLD) signal.
Preprocessing was performed with Statistical Parametric Mapping 2008 (SPM8) (Welcome Trust Centre for Neuroimaging, London, UK). The fMRI images were spatially realigned, slice time corrected and coregistered with the anatomical T1 image. Next, fMRI data were warped into MNI space by means of the spatial normalization parameters obtained from segmentation of the anatomical image. A voxel size of 3 × 3 × 3 mm3 was applied. For the univariate analysis the images were smoothed with a kernel size of 8 × 8 × 8 mm3, for the multivariate analysis the normalized, unsmoothed images were used.
2.5. Univariate analysis
A General Linear Model (GLM) was created in SPM8 with 8 event types, i.e., musical instruments and vehicles at each of the four stimulus locations. Six motion regressors were added as covariates of no interest. We contrasted all trials with baseline to determine the general pattern of activity evoked by the experimental trials and also contrasted the trials with vehicles to those with musical instruments. To evaluate location effects, we contrasted for each of the four stimulus locations the trials in which the object appeared in that location with all other experimental trials. The threshold was set at a voxel-level Family-Wise Error whole-brain corrected P < 0.05.
2.6. Volumes of interest for multivariate pattern analysis
The volumes of interest were defined based on cytoarchitectonic probabilistic mapping if available or else based on prior fMRI studies of spatial attention (Gillebert et al.,
Table 2
| Left hemisphere | Right hemisphere | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Coordinate | Number of voxels | Coordinate | Number of voxels | |||||||
| x | y | z | Average | S.D. | x | y | z | Average | S.D. | |
| Middle IPS (hIP1-3) | −37 | −51 | 43 | 195.9 | 23.0 | 39 | −48 | 45 | 171.9 | 19.8 |
| Posterior IPS | −20 | −86 | 30 | 129.4 | 12.6 | 16 | −86 | 34 | 146.3 | 15.7 |
| Area 5 | −14 | −45 | 61 | 241.0 | 37.7 | 11 | −48 | 63 | 231.4 | 24.2 |
| Area 7 | −18 | −65 | 56 | 350.9 | 59.1 | 20 | −64 | 58 | 295.2 | 37.4 |
| Supramarginal | −56 | −38 | 33 | 487.5 | 26.0 | 58 | −35 | 32 | 569.0 | 42.1 |
| Angular | −46 | −68 | 32 | 337.2 | 20.9 | 50 | −64 | 30 | 436.8 | 28.5 |
| Fusiform gyrus | −38 | −53 | −18 | 489.1 | 25.0 | 39 | −52 | −19 | 435.1 | 23.1 |
Mean coordinate and number of voxels (voxel size 3 × 3 × 3 mm3) for each VOI.
Coordinates are in MNI-space, average number of voxels and standard deviation per VOI are calculated over 46 subjects (31 subjects of the main experiment and 15 subjects of the geon experiment). Middle IPS refers to the sum of hIP1, hIP2, and hIP3; Supramarginal gyrus to the sum of area PFt, PFop, PFcm, PF, PFm (Caspers et al.,
The left and the right middle IPS volume of interest was obtained by summation of hIP1, hIP2 and hIP3 from the probabilistic brain atlas (Jülich-Düsseldorf cytoarchitectonic atlas) using the Anatomy Toolbox (Eickhoff et al.,
Figure 2

Overview of all volumes of interest. The primary focus was on middle IPS (sum of hIP1, hIP2, and hIP3), the other VOIs served as comparison. Except from posterior IPS, all VOIs were extracted from the Jülich-Düsseldorf cytoarchitectonic atlas by means of the Anatomy Toolbox (Eickhoff et al.,
Posterior IPS has not yet been characterized cytoarchitectonically. The posterior IPS VOI was defined bilaterally by creating a sphere (12 mm radius) centered on previously published fMRI MNI group coordinates (15, −87, 33 and −21, −87, 30, Vandenberghe et al., 2005) (Figures 2, 6A).
For the sake of comparison, the cytoarchitectonic areas of the superior and inferior parietal cortex were also examined. In order to limit the number of statistical comparisons, area PFt, PFop, PFcm, PF, PFm were grouped as the supramarginal gyrus (Caspers et al.,
In order to verify the specificity and sensitivity of the analyses conducted in middle and posterior IPS, the same analyses were also performed in a ventral stream region, i.e., FG defined as the sum of posterior and middle fusiform cytoarchitectonic areas FG1, FG2 (Caspers et al.,
Size differed between VOIs (Table 2) and this may theoretically affect the sensitivity of MVPA. For that reason we performed a secondary analysis where we equated the size between VOIs and evaluated whether we could replicate our findings. The size of the hIP1-3 VOI was made equal to that of the posterior IPS VOI by increasing the probability threshold for the hIP1, hIP2 and hIP3 maximum probability map (Eickhoff et al.,
2.7. Multivariate analysis
For MVPA, the fMRI time series was extracted from the unsmoothed images. Motion regressors and low-frequency trends were removed using SPM8. Next, for each of the 288 trials and for each voxel, the integral (the area under the curve) was calculated of the BOLD response between 2 and 8 s (Bruffaerts et al.,
2.7.1. Primary analysis: representational similarity analysis
A 24-by-24 entity-by-entity fMRI matrix was created per subject for each VOI. For every cell of the matrix, the cosine similarity was calculated between each pair of fMRI response patterns that corresponds to the entity pair of that cell. We excluded pairs of trials that contained stimuli presented at the same location in order to maximize the contribution of location-invariant object representations. Next, these individual fMRI similarity matrices were averaged per VOI over subjects. In each VOI, the Spearman correlation was calculated between the fMRI similarity matrix and the semantic similarity matrix for the entities (Kriegeskorte et al.,
Note that we first average the 24-by-24 fMRI cosine similarity matrix across subjects and then determine the cosine similarity with the semantic cosine similarity matrix (that is identical between subjects). In order to verify the normality of the distribution across subjects, we determined the distribution of the Spearman correlation coefficients between each individual's fMRI 24-by-24 cosine similarity matrix and the semantic cosine similarity matrix. We evaluated whether the distribution deviated from normality using the Shapiro-Wilk test and also whether the distribution differed from the null distribution (Student's t-test). Next, we computed for each individual a standardized position within the distribution. We calculated the P-value for the Spearman correlation coefficient between the individual's fMRI cosine similarity matrix and the semantic cosine similarity matrix (based on 10,000 random permutation labelings, see above). We transformed the P-value to a Z score and examined whether the distribution of the Z scores deviated from normality (Shapiro-Wilk) and whether the distribution differed from the null distribution.
If a semantic effect was found, we verified whether the effect differed between musical instruments and vehicles by means of a signed rank test (Bruffaerts et al.,
We also compared subjects in whom mirroring of the objects was applied (n = 17) and those in whom it was not (n = 14). The individual's rank of the correlation was compared between both subject groups using a Mann-Whitney U-test.
Regions that demonstrated a semantic effect were further investigated by comparing the fMRI similarity matrix with the eight similarity matrices corresponding to the layers of the Alexnet Deep Neural Network. Each of these matrices were correlated with the fMRI similarity matrix of interest. As before, we included all pairs of trials except those that contained stimuli presented at the same location and only off-diagonal values were included in the analysis. Statistical significance was determined by means of 10,000 random permutation labelings. We applied a threshold of P < 0.05, corrected for the number of layers. The same procedure was used for the two HMAX similarity matrices, the subjective visuoperceptual similarity matrix and also for the phonological similarity matrix.
A same analysis was performed to examine the correlation between the fMRI response patterns evoked by geon stimuli and the corresponding geon structural similarity matrix (Figure 1D), the C1 HMAX similarity matrix and the subjective perceptual similarity matrix.
2.7.2. Effect of object identity
In each VOI, the cosine similarity of the fMRI response pattern was calculated between each pair of trials in which a same entity was presented. Pairs of trials that had the stimulus location in common in addition to the entity were excluded to maximize the contribution of location-invariant object representations. Next, the cosine similarities were averaged over objects for each individual and then over individuals. To evaluate whether the cosine similarity differed from chance, 10,000 random permutations were performed. We used a one-tailed statistical threshold of P < 0.05 (Bruffaerts et al.,
If an effect was found, we repeated the analysis but confined the entities to either musical instruments or vehicles. Next, we calculated in each subject for both categories the rank of the result within the subject-specific distribution generated by random permutation labeling over all stimuli. A two-tailed signed rank test was performed comparing the ranks of the same subject between the two categories. We applied a statistical threshold of P < 0.05.
2.7.3. Effect of location
In each VOI, the cosine similarity of the fMRI response patterns was calculated between each pair of trials that had the stimulus location in common. Trial pairs that had the entity in common in addition to the stimulus location were excluded from this analysis so as to minimize the contribution from object identity to the similarity measure. Next, these cosine similarity values were averaged for each individual and then averaged over subjects. This value was then compared to the probability distributions obtained with 10,000 random permutation labelings, excluding pairs of trials in which the same object was shown at a same location. We used a one-tailed statistical threshold of P < 0.05.
2.7.4. Between-VOI comparison
When posterior or middle IPS demonstrated a significant effect, we compared it pairwise to the homotopical contralateral VOI and the other ipsilateral parietal VOIs by means of a one-tailed signed rank test (Bruffaerts et al.,
3. Results
3.1. Univariate analysis
The general activity pattern is shown in Figure 3A. The contrast between vehicles and musical instruments did not yield any significant differences (Figures 4B, 5B, 6B, 7B). Comparing each stimulus location with the remaining three locations resulted in an activity cluster for each location. The clusters of the lower quadrants were located lateral and superior in the occipital cortex (Figure 3B, upper row). For the upper quadrants, this led to inferior occipital activation of the contralateral hemisphere (Figure 3B, lower row). Peak coordinates and extent of each cluster can be found in Table 3. In a secondary analysis we looked for effects of stimulus location within the predefined VOIs using small volume correction. Significant effects were present in posterior IPS and in FG (Table 4).
Figure 3

Univariate analysis. (A) Axial slices depicting the univariate contrast of all stimuli compared to baseline. (B) Axial slices depicting for each quadrant the univariate contrast with the three other quadrants. Results for the left visual field are displayed in green-blue and results for the right visual field in red-yellow, for the lower visual field (upper row) and the upper visual field (lower row). Voxel-level inference threshold of FWE whole-brain corrected P < 0.05.
Figure 4

MVPA effects in left middle IPS (hIP1-3). (A) Axial (z = 43) and coronal (y = −46) slice depicting left middle IPS (hIP1, blue; hIP2, violet; hIP3; cyan). (B) Peristimulus respons for musical instruments and vehicles. (C) Deep Learning. Spearman correlation between the fMRI similarity matrix and the similarity matrices for the pictures for the eight layers of Alexnet. Statistical significance was evaluated by 10,000 random permutation labelings. The green dotted line corresponds to the statistical threshold corrected for the number of layers. (D) Probability distributions for the location-invariant semantic similarity effect. (E) Probability distributions for the location-invariant object identity effect. (F) Probability distributions for the phonological similarity effect. (G) Probability distributions for the object-invariant location effect. The red arrow indicates the true Spearman correlation/cosine similarity in the distribution of correlations/cosine similarities generated by 10,000 random permutations. X-axis: Spearman correlation averaged over the group of subjects. Y-axis: absolute frequency of a given average Spearman correlation value across all random permutation labelings. Black line: 95th percentile of the distribution.
Figure 5

MVPA effects in right middle IPS (hIP1-3). (A) Axial (z = 43) and coronal (y = −46) slice depicting right middle IPS (hIP1, blue; hIP2, violet; hIP3, cyan). (B) Peristimulus response for musical instruments and vehicles. (C) Deep learning. Spearman correlation between the fMRI similarity matrix and the similarity matrices for the pictures for the eight layers of Alexnet. Statistical significance was evaluated by 10,000 random permutation labelings. The green dotted line corresponds to the statistical threshold corrected for the number of layers. (D) Probability distributions for the location-invariant semantic similarity effect. (E) Probability distributions for the location-invariant object identity effect. (F) Probability distributions for the object-invariant location effect. The red arrow indicates the true Spearman correlation/cosine similarity in the distribution of correlations/cosine similarities generated by 10,000 random permutations. X-axis: Spearman correlation averaged over the group of subjects. Y-axis: absolute frequency of a given average Spearman correlation value across all random permutation labelings. Black line: 95th percentile of the distribution.
Figure 6

MVPA effects in left posterior IPS. (A) Axial (z = 30) and coronal (y = −80) slice depicting posterior IPS. (B) Peristimulus respons for each stimulus location. (C) Deep learning. Spearman correlation between the fMRI similarity matrix and the similarity matrices for the pictures for the eight layers of Alexnet. Statistical significance was evaluated by 10,000 random permutation labelings. The green dotted line corresponds to the statistical threshold corrected for the number of layers. (D) Probability distributions for the location-invariant semantic similarity effect. (E) Probability distributions for the location-invariant object identity effect. (F) Probability distributions for the location effect for real-life stimuli. The red arrow indicates the true Spearman correlation/cosine similarity in the distribution of correlations/cosine similarities generated by 10,000 random permutations. X-axis: Spearman correlation averaged over the group of subjects. Y-axis: absolute frequency of a given average Spearman correlation value across all random permutation labelings. Black line: 95th percentile of the distribution.
Figure 7

MVPA effects in the left angular gyrus. (A) Axial (z = 26) and coronal (y = −66) slice depicting posterior IPS. (B) Peristimulus response for musical instruments and vehicles. (C) Deep learning. Spearman correlation between the fMRI similarity matrix and the similarity matrices for the pictures for the eight layers of Alexnet. Statistical significance was evaluated by 10,000 random permutation labelings. The green dotted line corresponds to the statistical threshold corrected for the number of layers. (D) Probability distributions for the location-invariant semantic similarity effect. (E) Probability distributions for the phonological similarity effect. (F) Probability distributions for the location-invariant object identity effect. (G) Probability distributions for the object-invariant location effect. The red arrow indicates the true Spearman correlation/cosine similarity in the distribution of correlations/cosine similarities generated by 10,000 random permutations. X-axis: Spearman correlation averaged over the group of subjects. Y-axis: absolute frequency of a given average Spearman correlation value across all random permutation labelings. Black line: 95th percentile of the distribution.
Table 3
| Cluster extent | P-value cluster | Peak coordinate | Z-value peak | |
|---|---|---|---|---|
| Upper left quadrant | 63 | <0.0001 | 22, −78, −16 | 5.20 |
| Lower left quadrant | 194 | <0.0001 | 28, −93, 14 | 5.95 |
| Upper right quadrant | 268 | <0.0001 | −17, −81, −13 | 6.26 |
| Lower right quadrant | 154 | <0.0001 | −23, −96, 5 | 6.10 |
| 45 | <0.0001 | −35, −78, −7 | 5.76 |
Cluster extent (voxel size 3 × 3 × 3 mm3), P-value, MNI peak coordinate and Z-value of the peak of the univariate activation for each stimulus location.
The stimuli presented in one quadrant were contrasted with all other stimuli at a voxel-level inference threshold of FWE whole-brain corrected P < 0.05. For the lower right quadrant two clusters were found.
Table 4
| Volume of interest | Peak coordinate | Z-value peak | P | |
|---|---|---|---|---|
| Upper left quadrant | Right fusiform gyrus | 34, −60, −19 | 4.45 | 0.002 |
| Lower left quadrant | Right fusiform gyrus | 43, −69, −10 | 4.92 | 0.000 |
| Right posterior IPS | 25, −90, 26 | 5.29 | 0.000 | |
| Upper right quadrant | Left fusiform gyrus | −29, −66, −10 | 5.97 | 0.000 |
| Left posterior IPS | −26, −81, 23 | 4.63 | 0.000 | |
| Lower right quadrant | Left fusiform gyrus | −38, −75, −7 | 5.23 | 0.000 |
| Left posterior IPS | −20, −93, 20 | 5.67 | 0.000 |
Univariate results with small volume correction.
The first column mentions the first term of each contrast, the second (subtracted) term being all remaining conditions. For each contrast (Column 1), all VOIs with significant activation (Column 2) are displayed. Column 3–5: MNI peak coordinate, Z-value and voxel-level corrected P of the activation peak. The stimuli presented in one quadrant were contrasted with all other stimuli at a voxel-level treshold of corrected P < 0.05.
3.2. Semantic similarity
Similarity between fMRI activity patterns in left hIP1-3 correlated significantly with semantic similarity between the objects presented (Table 5, Figure 4D). This effect was not present in right hIP1-3 (Figure 5D). The similarity effect was significantly stronger in left than in right hIP1-3 (P = 0.023). No semantic similarity effects were present in left or right posterior IPS (Table 5, Figure 6D). The semantic similarity effect in left hIP1-3 was significantly stronger than in left posterior IPS (P = 0.0335). Semantic similarity effects were present in hIP1, hIP2 as well as hIP3 when tested each separately (P < 0.039). The effect did not differ between musical instruments and vehicles (P = 0.442). The semantic similarity effect did not differ between subjects in whom mirroring of the images was applied and those in whom it was not (Mann Whitney U-test: P = 0.565).
Table 5
| Sem. similarity | Object identity | Location | ||||
|---|---|---|---|---|---|---|
| Spearman ρ | P-value | Cos. similarity | P-value | Cos. similarity | P-value | |
| L middle IPS (hIP1-3) | 0.1199 | 0.0265 | 0.0058 | 0.0060 | −0.0004 | 0.788 |
| R middle IPS (hIP1-3) | 0.0077 | 0.4393 | 0.0019 | 0.2087 | 0.0004 | 0.392 |
| L posterior IPS | −0.0363 | 0.7164 | 0.0033 | 0.0150 | 0.0077 | <0.0001 |
| R posterior IPS | −0.0667 | 0.8667 | 0.0012 | 0.0407 | 0.0085 | <0.0001 |
Main experiment.
Column 2–3: Spearman correlations between the semantic similarity matrix and the fMRI similarity matrix. Columne 4–7: cosine similarity (CS) for location and object identity. Significant results at an uncorrected P < 0.05 are marked in bold. L, left; R, right.
When the size of hIP1-3 was equated to that of the posterior IPS VOI in a secondary analysis, results remained essentially the same (semantic similarity effect in the reduced L hIP1-3 ρ = 0.1070, P = 0.0388; in the reduced R hIP1-3, ρ = 0.0038, P = 0.5095). Direct comparison between IPS VOIs confirmed that the semantic effect in the reduced left hIP1-3 was significantly different from left posterior IPS (P = 0.0471) and from the reduced right hIP1-3 (P = 0.0489).
Analysis of the functionally defined middle IPS VOIs (Gillebert et al.,
The analysis is based on the correlation between the 24-by-24 semantic similarity matrix and the 24-by-24 fMRI cosine similarity matrix averaged over subjects. Hence, it is important to evaluate the normality of the distribution of the correlations across subjects. The distribution of the Spearman correlation coefficients between the individuals' fMRI cosine similarity matrix in the left hIP1-3 and the semantic cosine similarity matrix did not significantly deviate from normality (Shapiro-Wilk test, P = 0.259). The distribution of the Spearman correlation coefficients significantly differed from the null distribution (Student's t = 1.853, df = 30, P = 0.037). Likewise, the distribution of the Z scores did not significantly deviate from normality (Shapiro-Wilk test, P = 0.979). The distribution of the Z scores significantly differed from the null distribution (Student's t = 1.823, df = 30, P = 0.037).
RSA based on the C1 and C2 HMAX similarity matrices did not reveal any effects in the left hIP1-3 (resp. P = 0.336 and P = 0.547). There were no significant correlations between the similarity of activity patterns in left hIP1-3 and any of the layers from the Alexnet Deep Learning model when corrected for the number of comparisons (n = 8), although there was a trend for layers 4–6 (Figure 4C). Neither was there an effect when the subjective visuoperceptual similarity matrix was used as input for RSA (ρ = −0.0533, P = 0.644). No effects of phonological similarity were found in left hIP1-3 (ρ = 0.0177, P = 0.376) (Figure 4F).
Outside the IPS, the left supramarginal gyrus and the left and right angular gyrus showed a significant semantic similarity effect (Table 6; Figure 7). The left supramarginal gyrus also demonstrated an effect of phonological similarity (ρ = 0.095, P = 0.043). In superior parietal area 5 and area 7, there were no semantic similarity effects (Table 6). When the size of the cytoarchitectonic areas outside IPS was matched to that of the left hIP1-3, semantic similarity effects were confirmed in cytoarchitectonic areas within left supramarginal and angular gyrus bilaterally, without effects in the superior parietal lobule (Table 7).
Table 6
| Sem. similarity | Object identity | Location | ||||
|---|---|---|---|---|---|---|
| Spearman ρ | P-value | Cos. similarity | P-value | Cos. similarity | P-value | |
| L angular g. | 0.1206 | 0.0254 | 0.0067 | <0.0001 | −0.0002 | 0.3810 |
| R angular g. | 0.1333 | 0.0161 | 0.0040 | <0.0001 | 0.0012 | 0.08 |
| L supramarginal g. | 0.0991 | 0.0481 | 0.0056 | <0.0001 | −0.0006 | 0.3300 |
| R supramarginal g. | 0.0474 | 0.2107 | 0.0037 | <0.0001 | −0.0005 | 0.3660 |
| L area 5 | 0.0591 | 0.1594 | 0.0043 | 0.0341 | −0.0001 | 0.3403 |
| R area 5 | 0.0923 | 0.0826 | 0.0047 | 0.007 | 0.0004 | 0.1 |
| L area 7 | 0.0119 | 0.4150 | 0.0034 | 0.0189 | 0.0009 | 0.0831 |
| R area 7 | 0.0001 | 0.4909 | 0.0043 | 0.01 | 0.0026 | 0.01 |
| L FG | 0.1254 | 0.0259 | 0.0087 | <0.0001 | 0.0046 | <0.0001 |
| R FG | 0.0717 | 0.1153 | 0.0063 | 0.001 | 0.0056 | <0.0001 |
Main experiment: Effects for real-life entities outside IPS.
Column 2–3: Spearman correlations between the semantic similarity matrix and the fMRI similarity matrix. Columns 4–7: cosine similarity (CS) for location and object identity. Significant results at an uncorrected P < 0.05 are marked in bold. Significant results at an uncorrected P < 0.05 are marked in bold. FG, fusiform gyrus, corresponding to the sum of cytoarchitectonic areas FG1, FG2, FG3, and FG4.
Table 7
| Left hemisphere | Right hemisphere | |||||||
|---|---|---|---|---|---|---|---|---|
| Number of voxels | Semantic similarity | Number of voxels | Semantic similarity | |||||
| Average | S.D. | Spearman ρ | P-value | Average | S.D. | Spearman ρ | P-value | |
| PF | 158.4 | 11.9 | 0.0820 | 0.0862 | 192.8 | 19.2 | 0.0287 | 0.3070 |
| PFm | 183.6 | 12.9 | 0.0451 | 0.2346 | 205.6 | 18.1 | 0.0555 | 0.1773 |
| PFt | 141.5 | 11.8 | 0.1395 | 0.0137 | 98.9 | 11.5 | 0.0052 | 0.4514 |
| PGa | 195.8 | 14.5 | 0.0247 | 0.3234 | 209.7 | 15.5 | 0.1107 | 0.0400 |
| PGp | 244.1 | 14.7 | 0.1933 | 0.0012 | 243.5 | 17.8 | 0.1361 | 0.0141 |
| 7A | 236.4 | 24.1 | 0.0705 | 0.1285 | 133.3 | 18.8 | 0.0288 | 0.3139 |
| FG3 | 146.1 | 11.1 | 0.0668 | 0.1298 | 118.1 | 9.5 | 0.0028 | 0.4574 |
| FG4 | 185.9 | 10.9 | 0.1558 | 0.0087 | 147.2 | 11.4 | 0.1383 | 0.0152 |
Control analysis for VOI size.
Semantic effect in restricted hIP123 area (probability treshold left 54%, right 48%) and in selected cytoarchitectonic areas. Column 1–2: Average number of voxels (voxel size 3 × 3 × 3 mm3) and standard deviation per area, calculated over 46 subjects (31 subjects of the real-life stimuli experiment and 15 subjects of the geon experiment). Column 3–4: Spearman correlations between the semantic similarity matrix and the fMRI similarity matrix. Significant results at an uncorrected P < 0.05 are marked in bold.
In left FG, there was a significant semantic similarity effect (Table 6). This was of the same order of magnitude as that seen in left hIP1-3 (signed rank test: P = 0.64). There was also a significant correlation between fusiform fMRI patterns and the C2 layer of the HMAX model, both in the left (ρ = 0.136, P = 0.028) and in the right hemisphere (ρ = 0.146, P = 0.021). This effect of C2 HMAX in FG was significantly stronger than in left hIP1-3 (left FG vs. left hIP1-3: P = 0.0042). The similarity of the fMRI activity patterns in FG tended to correlate with the similarity of the responses in layers 3-6 of the AlexNet DCN in left FG (uncorr. P between 0.027 and 0.1). Subjective visuoperceptual similarity tended to correlate with similarity of activity patterns in FG (left FG: ρ = 0.1988, P = 0.0635; right FG: ρ = 0.178, P = 0.086). This did not differ significantly from left hIP1-3 (left FG vs. hIP1-3: P = 0.750, right FG vs. hIP1-3: P = 0.2194). In cytoarchitectonic areas within FG that were matched in size to left hIP1-3, left and right FG4 showed a significant semantic similarity effect (Table 7). There were also effects of visuoperceptual similarity. RSA with the C2 HMAX similarity matrix was significant in left and right FG3 and in the right FG4 (resp. P = 0.0091, P = 0.0028, P = 0.039). In left FG4 there was a significant correlation with AlexNet layer 4 (ρ = 0.171, P = 0.0061).
3.3. Object identity
The effect of object identity in left hIP1-3 was significant (Figure 4E, Table 5). An effect was also present in hIP1, hIP2, and hIP3 when tested separately (P < 0.014). The effect was present for musical instruments (average cosine similarity (CS) = 0.007, P = 0.012) and also for vehicles (CS = 0.005, P = 0.041) in left hIP1-3. An object identity effect was present in nearly all other parietal regions tested (except for the right hIP1-3) (Tables 5, 6; Figures 5E, 6E, 7F). In FG, the object identity effect was significant in both hemispheres (P < 0.001) (Table 6).
3.4. Location
There was a robust effect of location in left and right posterior IPS (Table 5; Figure 6F). There were no observable effects of location in hIP1-3 (Table 5; Figures 4G, 5F). The effect of location in left posterior IPS was significantly stronger than in left hIP1-3 and this was also true for the right posterior IPS compared to the right hIP1-3 (for both P < 0.001). In the right hemisphere a location effect was also found in area 7 (Table 6). Left and right fusiform gyrus exhibited a significant location effect as well (CS = 0.0046, P < 0.0001) (Table 6).
3.5. Geon experiment
For geons, there was an object identity effect in right hIP1-3 with a trend in the same direction in left hIP1-3 (Table 8). In posterior IPS, there was an object identity effect for geons on both sides as well as an effect of geon location (Table 8). Outside IPS, there was an object identity effect for geons in the angular and supramarginal gyrus bilaterally as well as area 7 bilaterally (P < 0.0025), with a further trend in right FG (P = 0.093). In the geon experiment, there was no significant correlation between any of the geon similarity matrices (geon structure, subjective visuoperceptual similarity, or C1 HMAX) and the similarity between activity patterns in any of the IPS VOIs (P > 0.14).
Table 8
| Geon structural similarity | Object identity | Location | ||||
|---|---|---|---|---|---|---|
| Spearman ρ | P-value | Cos. similarity | P-value | Cos. similarity | P-value | |
| L middle IPS (hIP1-3) | 0.0594 | 0.1571 | 0.0055 | 0.0807 | 0.0030 | 0.0690 |
| R middle IPS (hIP1-3) | −0.0173 | 0.6139 | 0.0083 | 0.0042 | 0.0018 | 0.1200 |
| L posterior IPS | −0.0770 | 0.9105 | 0.0053 | 0.0135 | 0.0101 | <0.001 |
| R posterior IPS | −0.1096 | 0.9617 | 0.0056 | 0.0037 | 0.0085 | <0.001 |
Geon experiment: Cosine similarity (CS) for structural similarity, object identity and location.
Significant results at an uncorrected P < 0.05 are marked in bold.
4. Discussion
The current study replicates the semantic similarity effect Devereux et al. (
4.1. Effects of object identity and location
Effects of object identity were present across nearly all parietal areas. The relatively ubiquitous object identity effect is probably due to the fact that object identity effects can occur for a variety of reasons situated at different processing stages. Previous studies that showed an object identity effect in IPS were based on an active task, most typically a working memory (Christophel et al.,
Posterior IPS showed an effect of both location and identity (Tables 5, 8). Such a combined effect was also present in FG (Table 6), in accordance with previous reports (Schwarzlose et al., 2008; Carlson et al.,
The middle IPS did not show any measurable effects of location (Tables 5, 8). Retinotopic mapping studies in individual subjects have revealed a topographical organization of IPS up to the most anterior end (Silver et al., 2005; Swisher et al., 2007; Silver and Kastner, 2009). These topographic effects can be enhanced by increasing the degree of spatial attention (Saygin and Sereno,
4.2. Effects of visuoperceptual similarity
When using pictures, visuoperceptual similarities may covary with semantic similarities. Hence, one of the study objectives was to evaluate the effect of visuoperceptual similarities on left middle IPS patterns in order to exclude that the apparent semantic similarity effect would be due to visuoperceptual similarity confounds (Bruffaerts et al.,
The AlexNetwork has been built based on supervised learning according to categorical labels assigned to pictures and the connected layers partly reflect this learned categorization. The connected layers of the DCN correlated with the behavioral measures of semantic similarity (Figure 1C). In the fMRI dataset, in middle IPS there was a trend toward a correlation with AlexNet layers 5–8 (Figures 4C, 5C), and even more strongly so in FG for AlexNet layers 3–6. This is in line with prior evidence that the similarity between the connected layers of the AlexNet DCN correlates with the similarity of fMRI activity patterns in downstream regions of the ventral occipitotemporal pathway, e.g., area IT (Khaligh-Razavi and Kriegeskorte,
4.3. Effects of semantic similarity
Originally, the effect of semantic similarity described in IPS by Devereux et al. (
The effect of semantic similarity in left middle IPS (Devereux et al.,
Importantly, this generality of involvement does not preclude coding of entities at a high level of granularity, both in terms of identity and semantic similarity. The combination of generality (Wojciulik and Kanwisher, 1999; Duncan,
4.4. Potential study limitations
Methodologically, the fMRI similarity matrix was first averaged over subjects and then the correlation with the semantic similarity matrix was calculated and the significance determined. Given the fine-grained analysis at the level of pairs of individual objects and the limited number of replications of each object (n = 12), the correlation at the individual level is insufficiently reliable, hence the need to average over subjects. We ensured that the significant effects were not driven by outliers by assessing the distribution of the values in the fMRI similarity matrix across subjects, and also verified that the distribution of the values differed from the null hypothesis. Previous studies have provided clear evidence that the effects that reach significance using the method applied are highly replicable across different study cohorts (Bruffaerts et al.,
The two categories we tested were based on a prior fMRI study (Bruffaerts et al.,
Conclusion
Left middle IPS (hIP1, hIP2, hIP3) activity patterns represent semantic similarity between concrete entities in a robust manner. This is unexpected but has now been replicated across different centers and experimental conditions.
Statements
Author contributions
VN: study design, data acquisition, data analysis and interpretation, drafting and revising manuscript, and final approval. RB: data analysis and interpretation, drafting and revising manuscript, and final approval. AL and IK: data analysis and interpretation, revising manuscript, and final approval. RP: data acquisition, data analysis, revising manuscript, and final approval. EK: data analysis and interpretation, revising manuscript, and final approval. RuV, GS, SD and PD: study design, data analysis and interpretation, revising manuscript, and final approval. RiV: study design, data analysis and interpretation, drafting and revising manuscript, and final approval.
Acknowledgments
RB is a postdoctoral fellow and RiV a Senior Clinical Investigator of the Research Foundation Flanders (FWO). This research was funded by FWO Grant GOAO9.13, KU Leuven Grant OT/12/097, and Federaal Wetenschapsbeleid Belspo Inter-University Attraction Pole Grant P7/11. The authors would like to thank Greet Kayaert, Santosh Mysore, and Ivo Popivanov for their advice.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
semantic processing, intraparietal sulcus, multi-voxel pattern analysis, object identity, geon, representational similarity analysis
Citation
Neyens V, Bruffaerts R, Liuzzi AG, Kalfas I, Peeters R, Keuleers E, Vogels R, De Deyne S, Storms G, Dupont P and Vandenberghe R (2017) Representation of Semantic Similarity in the Left Intraparietal Sulcus: Functional Magnetic Resonance Imaging Evidence. Front. Hum. Neurosci. 11:402. doi: 10.3389/fnhum.2017.00402
Received
26 May 2017
Accepted
20 July 2017
Published
04 August 2017
Volume
11 - 2017
Edited by
Nathalie Tzourio-Mazoyer, CNRS CEA Université Bordeaux, France
Reviewed by
Emiliano Macaluso, Claude Bernard University Lyon 1, France; Christopher Richard Cox, University of Manchester, United Kingdom
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Copyright
© 2017 Neyens, Bruffaerts, Liuzzi, Kalfas, Peeters, Keuleers, Vogels, De Deyne, Storms, Dupont and Vandenberghe.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Rik Vandenberghe rik.vandenberghe@uz.kuleuven.ac.be
†Shared first author.
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