Biomolecular Structure | List of Frontiers open access articles

Original Research

Published on 30 Jan 2020

A Circuit Topology Approach to Categorizing Changes in Biomolecular Structure

in Chemical Physics and Physical Chemistry

Otto Schullian
Jaie Woodard
Arash Tirandaz
Alireza Mashaghi

Frontiers in Physics

doi 10.3389/fphy.2020.00005

5,479 views
19 citations

Hypothesis and Theory

Published on 03 Jun 2024

Molecular storytelling: a conceptual framework for teaching and learning with molecular case studies

in STEM Education

Caleb M. Trujillo
Shuchismita Dutta

Frontiers in Education

doi 10.3389/feduc.2024.1379515

5,412 views
3 citations

Original Research

Published on 17 Jun 2021

Visualizing Synaptic Multi-Protein Patterns of Neuronal Tissue With DNA-Assisted Single-Molecule Localization Microscopy

Kaarjel K. Narayanasamy
Aleksandar Stojic
Yunqing Li
Steffen Sass
Marina R. Hesse
Nina S. Deussner-Helfmann
Marina S. Dietz
Thomas Kuner
Maja Klevanski
Mike Heilemann

Frontiers in Synaptic Neuroscience

doi 10.3389/fnsyn.2021.671288

10,527 views
15 citations

Original Research

Published on 08 Apr 2015

Changing the topology of protein backbone: the effect of backbone cyclization on the structure and dynamics of a SH3 domain

in Chemical Biology

Frank H. Schumann
Ranjani Varadan
Praveen P. Tayakuniyil
Jennifer H. Grossman
Julio A. Camarero
David Fushman

Frontiers in Chemistry

doi 10.3389/fchem.2015.00026

5,738 views
8 citations

Original Research

Published on 08 Sep 2022

DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images

in Structural Biology

Ilyes Hamitouche
Slavica Jonic

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.965645

5,199 views
33 citations

Original Research

Published on 21 Oct 2021

Biomolecular Perturbations in In-Cell Dynamic Nuclear Polarization Experiments

in Structural Biology

Sarah A. Overall
Alexander B. Barnes

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.743829

3,745 views
22 citations

Review

Published on 21 Nov 2022

Friends in need: How chaperonins recognize and remodel proteins that require folding assistance

in Protein Folding, Misfolding and Degradation

George Stan
George H. Lorimer
D. Thirumalai

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.1071168

6,195 views
16 citations

Technology and Code

Published on 13 Aug 2021

3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories

in Biological Modeling and Simulation

Genís Bayarri
Adam Hospital
Modesto Orozco

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.726232

6,489 views
10 citations

Review

Published on 18 Feb 2022

The Physical Basis for pH Sensitivity in Biomolecular Structure and Function, With Application to the Spike Protein of SARS-CoV-2

in Biophysics

Jim Warwicker

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2022.834011

6,800 views
14 citations

Original Research

Published on 13 Feb 2023

Cholesterol content regulates silica-induced lysosomal membrane permeability

in Immunotoxicology

Matthew J. Sydor
Rebekah L. Kendall
Andrij Holian

Frontiers in Toxicology

doi 10.3389/ftox.2023.1112822

5,318 views
12 citations

Review

Published on 11 Feb 2026

Connecting the dots: deep learning-based automated model building methods in cryo-EM

in Structural Biology

Harsh Bansia
Amedee des Georges

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2025.1613399

1,111 views

Original Research

Published on 19 Jan 2022

Tra2beta-Dependent Regulation of RIO Kinase 3 Splicing During Rift Valley Fever Virus Infection Underscores the Links Between Alternative Splicing and Innate Antiviral Immunity

in Virus and Host

Luke Adam White
Thomas C. Bisom
Hunter L. Grimes
Miyuki Hayashi
Jean-Marc Lanchy
J. Stephen Lodmell

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2021.799024

3,985 views
10 citations

Original Research

Published on 05 Jul 2018

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi

in Molecular Bacterial Pathogenesis

Dan Drecktrah
Laura S. Hall
Philipp Rescheneder
Meghan Lybecker
D. Scott Samuels

Frontiers in Cellular and Infection Microbiology

doi 10.3389/fcimb.2018.00231

6,816 views
27 citations

Original Research

Published on 15 Feb 2016

Acute Exposure to Crystalline Silica Reduces Macrophage Activation in Response to Bacterial Lipoproteins

in Molecular Innate Immunity

Gillian L. Beamer
Benjamin P. Seaver
Forrest Jessop
David M. Shepherd
Celine A. Beamer

Frontiers in Immunology

doi 10.3389/fimmu.2016.00049

8,881 views
24 citations

Review

Published on 19 Dec 2014

Ser or Leu: structural snapshots of mistranslation in Candida albicans

in Structural Biology

Zsuzsa Sárkány
Alexandra Silva
Pedro J. B. Pereira
Sandra Macedo-Ribeiro

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2014.00027

6,203 views
12 citations

Review

Published on 21 Feb 2020

Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections

in Microbial Immunology

Patrick R. Secor
Elizabeth B. Burgener
M. Kinnersley
Laura K. Jennings
Valery Roman-Cruz
Medeea Popescu
Jonas D. Van Belleghem
Naomi Haddock
Conner Copeland
Lia A. Michaels

Frontiers in Immunology

doi 10.3389/fimmu.2020.00244

36,200 views
129 citations

Articles

A Circuit Topology Approach to Categorizing Changes in Biomolecular Structure

Molecular storytelling: a conceptual framework for teaching and learning with molecular case studies

Visualizing Synaptic Multi-Protein Patterns of Neuronal Tissue With DNA-Assisted Single-Molecule Localization Microscopy

Changing the topology of protein backbone: the effect of backbone cyclization on the structure and dynamics of a SH3 domain

DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images

Biomolecular Perturbations in In-Cell Dynamic Nuclear Polarization Experiments

Friends in need: How chaperonins recognize and remodel proteins that require folding assistance

3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories

The Physical Basis for pH Sensitivity in Biomolecular Structure and Function, With Application to the Spike Protein of SARS-CoV-2

Cholesterol content regulates silica-induced lysosomal membrane permeability

Connecting the dots: deep learning-based automated model building methods in cryo-EM

Tra2beta-Dependent Regulation of RIO Kinase 3 Splicing During Rift Valley Fever Virus Infection Underscores the Links Between Alternative Splicing and Innate Antiviral Immunity

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi

Acute Exposure to Crystalline Silica Reduces Macrophage Activation in Response to Bacterial Lipoproteins

Ser or Leu: structural snapshots of mistranslation in Candida albicans

Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections