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Facing Marine Deoxygenation

Original Research ARTICLE Provisionally accepted The full-text will be published soon. Notify me

Front. Mar. Sci. | doi: 10.3389/fmars.2019.00027

Rates and pathways of N2 production in a persistently anoxic fjord: Saanich Inlet, British Columbia

 Céline C. Michiels1, 2,  Julia A. Huggins1, 2, Karina E. Giesbrecht3, 4,  Jenifer S. Spence1, 2,  Rachel L. Simister1, 2, Diana E. Varela3, 4,  Steven J. Hallam1, 5, 6, 7 and  Sean A. Crowe1, 2, 7*
  • 1Department of Microbiology and Immunology, University of British Columbia, Canada
  • 2Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Canada
  • 3Department of Biology, Faculty of Science, University of Victoria, Canada
  • 4Department of School of Earth and Ocean Sciences, Faculty of Science, University of Victoria, Canada
  • 5Institute of Life Sciences, University of British Columbia, Canada
  • 6University of British Columbia, Canada
  • 7Peter Wall Institute for Advanced Studies, University of British Columbia, Canada

Marine oxygen minimum zones (OMZs) support 30-50% of global fixed-nitrogen (N) loss but comprise only 7% of total ocean volume. This N-loss is driven by canonical denitrification and anaerobic ammonium oxidation (anammox), and the distribution and activity of these two processes vary greatly in space and time. Factors that regulate N-loss processes are complex, including organic matter availability, oxygen concentrations, and NO2- and NH4+ concentrations. While both denitrification and anammox produce N2, the overall geochemical outcome of these processes are different, as incomplete denitrification, for example, produces N2O, which is a potent greenhouse gas. Rates of anammox and denitrification and more detailed ecophysiological knowledge of the microorganisms catalyzing these processes are needed to develop more robust models of N-loss in OMZs. To this end, we conducted monthly incubations with 15N-labeled N during anoxic conditions and deep-water renewal cycle in Saanich Inlet, British Columbia, a persistently anoxic fjord. Both denitrification and anammox operated throughout the low oxygen water column with depth integrated rates of anammox and denitrification ranging from 0.150.03 to 3.40.3 and 0.020.006 to 142 mmol N2 m-2 d-1, respectively. Most N2 production in Saanich Inlet was driven by denitrification, with high rates developing in response to enhanced substrate supply from deep water renewal. Dynamics in rates of denitrification were linked to shifts in microbial community composition. Notably, periods of intense denitrification were accompanied by blooms in an Arcobacter population against a background community dominated by SUP05 and Marinimicrobia. Rates of N2 production through denitrification and anammox, and their dynamics, were then explored through flux-balance modeling with higher rates of denitrification linked to the physiology of substrate uptake. Overall, both denitrification and anammox operated throughout the year, contributing to an annual N-loss of 2 x 10-3 Tg N2 yr-1, 37% of which we attribute to anammox and 63% to complete denitrification. Extrapolating these rates from Saanich Inlet to all similar coastal inlets in BC (2478 km2), we estimate that these inlets contribute 0.1 % to global pelagic N-loss.

Keywords: Anammox, Denitrification, N2 production, Sulphidic, Anoxia

Received: 05 Oct 2018; Accepted: 21 Jan 2019.

Edited by:

Perran Cook, Monash University, Australia

Reviewed by:

Arvind Singh, Physical Research Laboratory, India
Annie Bourbonnais, University of South Carolina, United States  

Copyright: © 2019 Michiels, Huggins, Giesbrecht, Spence, Simister, Varela, Hallam and Crowe. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Prof. Sean A. Crowe, Department of Microbiology and Immunology, University of British Columbia, Vancouver, V6T 1Z3, British Columbia, Canada, sean.crowe@ubc.ca