ORIGINAL RESEARCH article

Front. Mar. Sci., 31 March 2020

Sec. Marine Evolutionary Biology, Biogeography and Species Diversity

Volume 7 - 2020 | https://doi.org/10.3389/fmars.2020.00182

Systematics and Phylogenetic Relationships of New Zealand Benthic Octopuses (Cephalopoda: Octopodoidea)

  • 1. Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile

  • 2. National Institute of Water and Atmospheric Research, Ltd., Wellington, New Zealand

  • 3. School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand

  • 4. Millennium Nucleus for Ecology and Sustainable Management of Oceanic Islands, Coquimbo, Chile

  • 5. Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Coquimbo, Chile

  • 6. Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile

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Abstract

The systematics of the New Zealand octopods have only been reviewed twice in the last 100 years. In these revisions many species have been provisionally classified in the genus Octopus. Recent genetic studies have synonymized some New Zealand species with octopuses from other regions. The present study investigates the systematics and phylogeny of octopuses from New Zealand using eighty eight specimens, three mitochondrial genes (16S rRNA, cytochrome c oxidase subunit I, and cytochrome c oxidase subunit III) and one nuclear gene (Rhodopsin). Forty-four new octopod DNA sequences (belonging to 13 species) were included, adding to the 83 existing sequences from GenBank. All sequences were used to generate phylogenetic trees based on Maximum Likelihood (ML) and Bayesian inference (BI), with a data set composed by 97 species, including octopod sister groups and Vampyroteuthis infernalis as an outgroup. Gene tree and species delimitation analyses revealed a distinct genetic difference between two sympatric Graneledone subspecies, which we propose as valid species. Muusoctopus tangaroa is a sister species of M. thielei from Kerguelen; while Enteroctopus zealandicus forms a clade with E. megalocyathus from South America and E. dofleini from the North Pacific. Similarly, Octopus campbelli, O. huttoni, and O. mernoo form a monophyletic group with Robsonella fontaniana from South America, Scaeurgus unicirrhus from the Atlantic and O. pallidus from Australia. Pinnoctopus cordiformis is close to Grimpella thaumastocheir and several species of Octopus sensu lato as in previous phylogenetic studies. This study suggests that octopuses from New Zealand have different phylogenetic and biogeographic origins and represent independent radiations into this region.

Introduction

The incirrates include benthic and pelagic octopods in two superfamilies: Argonautoidea Cantraine, 1841 (pelagic octopods), and Octopodoidea (d’Orbigny, 1840) (benthic and pelagic octopods). Benthic octopuses are a group of over 200 species inhabiting all oceans of the world, from tropical to polar regions, and from the intertidal to at least 3,000 m depth (Norman, 2000; Nesis, 2003; Hoving et al., 2014; Jereb et al., 2014). Despite this diversity, the current systematic relationships within the group are still poorly understood given their variable morphology and lack of suitable characters for morphological analysis (Strugnell et al., 2014). In recent years, several changes in octopod taxonomy have been proposed, including a new phylogenetic classification that positions incirrate octopuses in the superfamily Octopodoidea, which is composed of six families: Octopodidae, Megaleledonidae, Enteroctopodidae, Amphitretidae, Eledonidae, and Bathypolypodidae (Strugnell et al., 2014).

Considering that nearly 200 species are currently incorporated within this categorization, most of the octopod phylogenies published to date have included only few species (<30) (Carlini et al., 2001; Guzik et al., 2005; Strugnell et al., 2005; Strugnell et al., 2014), with just a few studies considering more than fifty species (see Lindgren et al., 2012; Ibáñez et al., 2014, 2018). Incorporating much more species into octopod phylogenies seems problematic, as most species are recognized only from type material that has been fixed in formaldehyde and consequently lacks color and characters seen only in living specimens, and for which DNA sequences are not available. This has hindered the analysis of phylogenetic relationships as missing taxa can significantly influence tree topology (Graybeal, 1998; Poe and Swofford, 1999; Rosenberg and Kumar, 2003); therefore, including missing and poorly studied species in new DNA sequence analyses is important to provide a more complete and updated understanding of the phylogenetic relationships among benthic octopuses.

In the specific case of octopod fauna from New Zealand, this was initially reported by Dell (1952) in a monograph describing 14 species of benthic and pelagic octopuses. O’Shea (1999) revised New Zealand octopod fauna, placing 39 octopod species in six families and 14 genera, with two new genera and 16 new species. Many new species were assigned to an unplaced genus provisionally called ‘Octopus’ (Norman and Hochberg, 2005; Jereb et al., 2014); however, neither Dell nor O’Shea had the benefit of obtaining genetic information for complementing their morphologic approach. The most recent review of New Zealand biodiversity includes 41 octopod taxa (Spencer et al., 2009), although recent genetic studies have synonymized two of the New Zealand species (Octopus gibbsiO’Shea, 1999; Amor et al., 2014 and O. jollyorumReid and Wilson, 2015; Gleadall, 2016).

Biogeographically, New Zealand’s marine fauna comprises both subtropical and tropical species (Shears et al., 2008). The relationships among benthic octopuses from New Zealand, Australia, and South America has been hypothesized from evidence based on morphology and distribution (O’Shea, 1999). Previous biogeographic studies based on ancestral distribution inferred from phylogenies did not include the New Zealand octopod fauna (i.e., Strugnell et al., 2008, 2011; Ibáñez et al., 2016), suggesting that the inclusion of those species could dramatically change not only the phylogenetic hypothesis but also our knowledge of the biogeographic events that would explain the origin of the octopus in this region.

The aims of this study were to: (i) determine the evolutionary relationships within the New Zealand octopuses and their genetic relationships in the context of octopus phylogeny and (ii) clarify the current status of some species identities. Furthermore, establishing taxonomic clarity on a regional subset of species is prerequisite to larger scale revisions of the broader group. For this purpose, we constructed a molecular phylogeny of 88 species of benthic octopuses, in addition to nine outgroups to estimate their phylogenetic relationships.

Materials and Methods

Sampling

A total of 88 octopuses were obtained and examined from stored collections (Table 1 and Figure 1). Of these, 20 specimens were captured by bottom trawl during fisheries research voyages aboard the National Institute of Water and Atmospheric Research, Ltd. (NIWA) vessel R/V Tangaroa. A further set of 38 specimens were collected by New Zealand Ministry for Primary Industries scientific observers program from New Zealand fishing vessels. Finally, 30 octopuses were collected by NIWA staff during the annual Bluff oyster survey in South Island (Figure 1). Specimens were captured at depths ranging from 38 to 1208 m.

TABLE 1

SpeciesNIWA codeDepth (m)LatitudeLongitude16SCOICOIII
Argonauta nodosus95200-A80−37.1174.1MT216948MT216541MT225040
Argonauta nodosus95200-B80−37.1174.1MT216949MT216542MT225041
Enteroctopus zealandicus104973424−43.8346666−178.834MT216950MT216543
Enteroctopus zealandicus105194459−43.2553333176.228666MT216951MT216544MT225042
Enteroctopus zealandicus106215394−43.3713333178.943833MT216952MT216545MT225043
Enteroctopus zealandicus95204350−47.03165.695MT216953MT216546MT225044
Enteroctopus zealandicusNZ9MT216954MT216547MT225045
Enteroctopus zealandicusNZP13MT216955MT225046
Graneledone challengeri889121012−34.8158333171.6606667MT216957MT225048
Graneledone challengeri952131090−42.653333−179.925MT216956MT216548MT225047
Graneledone challengeriNZP30MT216958MT225049
Graneledone taniwha kubodera85918779−42.8706667−179.739667MT216959MT216556
Graneledone taniwha kubodera105193928−44.6903333173.693MT216960MT216549MT225050
Graneledone taniwha kubodera105195652−42.8616667175.925MT216961MT216550MT225051
Graneledone taniwha kubodera106060566−44.1628333174.6704MT216962MT216551MT225052
Graneledone taniwha kubodera106065577−44.1761667174.6696MT225053
Graneledone taniwha kubodera106227523−43.118−179.623333MT216963MT225054
Graneledone taniwha kuboderaNZ1MT216968MT216557MT225059
Graneledone taniwha kuboderaNZ6MT216969MT216558MT225060
Graneledone taniwha taniwha95210836−46.665170.595MT216964MT216552MT225055
Graneledone taniwha taniwha95211878−46.716667170.588333MT216965MT216553MT225056
Graneledone taniwha taniwha95212977−46.793333170.453333MT216966MT216554MT225057
Graneledone taniwha taniwha95214820−46.103333171.123333MT216967MT216555MT225058
Muusoctopus tangaroa106245-B654−44.2691667179.6023333MT216979MT216567MT225072
Muusoctopus tangaroa95205562−49.046667166.575MT225068
Muusoctopus tangaroa95207624−49.22166.643333MT216981MT216565MT225069
Muusoctopus tangaroa95208562−49.046667166.575MT216980MT216566MT225070
Muusoctopus tangaroa95209562−49.046667166.575MT225071
Octopus campbelli106213394−42.7278333178.1041667MT216983MT216568MT225073
Octopus huttoni10544538−42.653333−179.925MT216986MT216571MT225076
Octopus huttoni105446-A38.4−46.6019667168.0571MT216987MT216572MT225077
Octopus huttoni105446-B38.4−46.6019667168.0571MT216988MT216573MT225078
Octopus huttoni105446-C38.4−46.6019667168.0571MT216989MT216574MT225079
Octopus huttoni105446-D38.4−46.6019667168.0571MT216990MT216575MT225080
Octopus huttoni105448-A42−46.70555167.9718167MT216991MT216576MT225081
Octopus huttoni105452-D42−46.6578667168.1598833MT216992MT216577MT225082
Octopus mernoo105443-A369−43.4925176.1533333MT216994MT216578MT225083
Octopus mernoo105443-B369−43.4925176.1533333MT216995MT216579MT225084
Octopus mernoo106116-C465−43.8043333176.5976667MT216996MT216580MT225085
Octopus mernoo106232461−43.273179.0375MT216984MT216569MT225074
Octopus campbelliNZP25MT216985MT216570MT225075
Opisthoteuthis chathamensisNZP22MT216982
Opisthoteuthis mero106093442−43.1838333175.8743333MT216997
Opisthoteuthis mero95194492−46.463333166.181667MT216998
Pinnoctopus cordiformis10544932.9−46.7388833168.22715MT216970MT225061
Pinnoctopus cordiformis10545132.9−46.66285168.2126333MT216971MT216559MT225062
Pinnoctopus cordiformis95192−43.403333−176.338333MT216972MT216560MT225063
Pinnoctopus cordiformis95196130−44.041667173.623333MT216973MT216561MT225064
Pinnoctopus cordiformis95197130−44.041667173.623333MT216974MT216562MT225065
Pinnoctopus cordiformis95198130−44.041667173.623333MT216975MT216563MT225066
Pinnoctopus cordiformis95216-A98−38.248333174.033333MT216976MT216564MT225067
Pinnoctopus cordiformis95215105−38.138333174.065MT216978
Pinnoctopus cordiformis104974424−41.0166667174.8833333MT216977
Thaumeledone zeiss1054351208−44.716176.6798333MT216999MT225086
Thaumeledone zeissNZP31MT217000MT216581MT225087
Thaumeledone zeissNZP32MT217001MT225088
Vitreledonella richardi106147947−42.7278333178.1041667MT216582

Octopod species included in the phylogenetic analyses and their GenBank code for each mitochondrial gene.

Samples without coordinates were collected from the Chatham Rise, New Zealand. The NIWA code correspond to the voucher specimen catalog number.

FIGURE 1

FIGURE 1

Sites along the New Zealand archipelago where octopus specimens were collected.

All specimens are deposited at NIWA Invertebrate Collection, Wellington, New Zealand (Table 1) and are available for examination. Additionally, we reviewed some type specimens from NIWA to confirm their identification and taxonomic status.

Type Material Examined

Pinnoctopus cordiformis (Quoy and Gaimard, 1832): Neotype NIWA 43044 (H-668), ML 120 mm, 41°09.14′ S, 173°15.07′ E, 23–24 m, 21/03/1997.

Octopus mernoo (O’Shea, 1999): Holotype NIWA 7555 (H-666), ML 33.5 mm, 43°51.19′ S, 178°58.81′ E, 480 m, 13/09/1989.

Graneledone taniwha (O’Shea, 1999): Holotype NIWA 662, ML 121 mm, 44°41.90′ S, 177°23.71′ W, 1135–1157 m, 17/10/1995.

Muusoctopus tangaroa (O’Shea, 1999): Holotype NIWA 7546 (H-660), ML 97 mm, 44°06.99′ S, 178°26.01′ E, 936–999 m, 11/10/1995.

Muusoctopus clyderoperi (O’Shea, 1999): Holotype NIWA 7556 (H-667), ML 80 mm, 39°58.55′ S, 178°14.80′ E, 900 m, -/04/1994.

Muusoctopus tegginmathae (O’Shea, 1999): Holotype NIWA 7545 (H-659), ML 64.5 mm, 39°57′ S, 178°16′ E, 1020–1250 m, 25/09/1995.

Most specimens were frozen at sea prior to being shipped to NIWA where they were defrosted. In the laboratory, mantle tissue samples were taken and stored in 99% ethanol until required for the molecular analysis. Foveaux Strait specimens were shipped in plastic bags on ice, inside an insulated box to NIWA, Wellington, and processed immediately. Small whole animals were preserved in 99% ethanol. Tissue subsamples were taken from larger animals before they were fixed in a buffered 5% formaldehyde solution, then transferred to 80% ethanol, for anatomical and morphological analyses.

DNA Extraction, PCR Amplification, and Sequencing

Total DNA was extracted from 66 specimens of the total 88 examined using a high-salt extraction protocol (Aljanabi and Martinez, 1997), the phenol/chloroform method (Sambrook et al., 1989), or DNeasy® purification kits (mouse tail protocol, Qiagen GmbH, Germany). Polymerase Chain Reaction (PCR) amplifications were carried out in 25 μL volumes with 5 units of PlatinumTMTaq DNA polymerase (Invitrogen) with 20 mM Tris HCl (pH 8.4), 50 mM KCl, 2.5 mM dNTPs, 3 mM MgCl2 and 0.5 μM each of primers of the mtDNA genes Cytochrome Oxidase I (COI), Cytochrome Oxidase III (COIII) and 16S rRNA (Simon et al., 1991). Primers for COI were modified from Folmer et al. (1994) to match octopus DNA sequences in GenBank (Forward: TYTCAACAAATCATAAAGAYATTG G, Reverse: TATACTTCTGGRTGACCAAARAATCA). Primers for COIII were also modified from the literature (Forward: CAATGATGACGWGAYATTATTCG; Guzik et al., 2005 and Reverse: TCTACAAAATGTCAYTATCA; Simon et al., 1994). After an initial denaturation (2 min at 94°C), the reaction mixtures were subjected to 30–40 cycles of 94°C (30 s), [40–50°C (30 s) for COI; 45–65°C (30 s) for 16S; 40–45°C (30 s) for COIII], and 72°C (60 s) followed by a final extension at 72°C (10 min) using a thermal cycler. PCR products were purified using ExoSAP-IT and the DNA sequences were determined using a 3730 ABI Genetic Analyzer at Macrogen, Inc. (Seoul, South Korea). The resultant DNA sequences were aligned by Muscle using default parameters (Edgar, 2004) implemented in MEGA ver. X software (Kumar et al., 2018). Sequences generated in this study are available from GenBank (Table 1). Protein-coding sequences (COI and COIII) were translated to amino acids using the invertebrate mitochondrial genetic code to check for errors or gaps in MEGA.

Species Delimitation

Species delimitation was evaluated by using the Bayesian Poisson tree processes (bPTP) analyses (Zhang et al., 2013). Previously, Maximum Likelihood and Bayesian phylogenetic analyses were performed, including two preliminary steps on the aligned DNA sequences. First, Xia’s test for saturation of the phylogenetic signal of each gene was performed using Dambe ver. 6.0 (Xia, 2017). Second, the best substitution model for each gene was estimated with jModelTest (Posada, 2008) using the Bayesian Information Criterion (BIC).

The phylogenetic relationships of the benthic octopuses were examined using a Maximum Likelihood (ML) reconstruction via the IQ-TREE online server (Trifinopoulos et al., 2016) with hill-climbing NNI tree search strategy (Nguyen et al., 2015). The ModelFinder option (Kalyaanamoorthy et al., 2017) was used under a partition scheme including codon position for coding genes (COI, and COIII). Statistical support was estimated using 5,000 ultrafast bootstrap replicates (Minh et al., 2013). The trees were rooted using the cirrates Opisthoteuthis meroO’Shea (1999) and O. chathamensisO’Shea (1999) as outgroups, as Cirrata is well-established as the sister group of Incirrata (Voight, 1997; Young et al., 1998; Lindgren et al., 2012).

Phylogenetic reconstruction was inferred from a partitioned matrix (16S, COI, COIII) with a different substitution model for each gene. Bayesian analyses were conducted using MrBayes ver. 3.2 (Ronquist et al., 2012) with four chains, each with 10 million generations, sampled every 1,000 generations. Bayesian analyses were performed several times to compare the likelihood values of each run using Tracer ver. 1.5 (Rambaut and Drummond, 2009). The first 1,000 trees of each run were discarded as burn-in, and a consensus of the remaining trees was calculated. FigTree ver. 1.4 was used to edit the trees (Rambaut, 2009). In both phylogenetic analyses (ML and BI), we used specimens for which all mitochondrial genes were available (44 specimens, Table 1). The consensus tree was finally used as input for the species delimitation analysis with the Bayesian Poisson Tree Process method (bPTP; Zhang et al., 2013) as implemented in the web server1.

Additional species boundaries were delimited using the Automatic Barcode Gap Discovery method (ABGD; Puillandre et al., 2012). The ABGD method recursively searches for major changes in the slope of ranked pairwise genetic distances between groups of individual sequences. Through this, ABGD proposes a distance superior to maximal intraspecific sequence divergences, as determined using a coalescent model. These distances potentially correspond to the frontiers between intra and interspecific distances, or the so-called barcode gap. ABGD analyses were performed online2 using both the COI and COIII data sets independently, excluding outgroups. The p-distance with a minimum gap width of 1.5 were selected. The remaining parameters were set as default (Pmin = 0.001, Pmax = 0.100, Steps = 10, Number of bins = 20).

Phylogenetic Analysis

In a second phylogenetic analysis, mitochondrial DNA sequences obtained during the present study were combined with those of other species available at GenBank (16, COI, COIII, and Rhodopsin) to explore the phylogenetic position of the New Zealand taxa. These included Rhodopsin (RHO) sequences in a matrix with 97 species (Table 2), including 88 species of octopuses from the superfamily Octopodoidea, in addition to outgroups from two pelagic octopuses of the superfamily Argonautoidea (Argonauta argo and Argonauta nodosus), six cirrates (Opisthoteuthis mero, O. chathamensis, O. depressa, O. massyae, Cirroctopus glacialis, and Stauroteuthis gilchristi), and the vampire squid Vampyroteuthis infernalis. These analyses were performed in the same way as the previous analysis in IQ-TREE and MrBayes.

TABLE 2

Species16S rRNACOICOIIIRhodopsin
Abdopus aculeatusGQ900717AB430514AB573185HM104287
Adelieledone piatkowskiEU071431EU071444EU071455EU086511
Adelieledone polymorphaEF102194EF102173EF102153EF102113
Ameloctopus litoralisHM104245HM104255AJ628207
Amphioctopus aeginaFJ800371AB430515AB573189HM104289
Amphioctopus kagoshimensisAJ311108AB430520AB573193
Amphioctopus marginatusGQ900709AB430521AB573195
Argonauta argoAB191108AB191273GU288523
Bathypolypus arcticusDQ280044AF000029KP693813KP693815
Bathypolypus sponsalisEF016338EF016329FJ603530HM104289
Callistoctopus luteusGQ900707AB430526AB573208
Callistoctopus minorAB191110AB430540AB573201
Callistoctopus ornatusGQ900705AY616892AB573209AY616926
Cirroctopus glacialisAF487304AF377962
Cistopus chinensisKF017606KF017606KF017606
Cistopus indicusAJ252744AB385878AB573210HM104291
Cistopus taiwanicusKF017605KF017605KF017605
Eledone cirrhosaKC792309AY557520KC792300AY617043/HM104292
Enteroctopus dofleiniAY545109AB191272AB573211AY545174
Enteroctopus megalocyathusKC792314KF774312KC792304
Graneledone antarcticaEU071436AF377973EU071461EU086518
Graneledone boreopacificaEU071435EU071448EU071460EU086516
Graneledone verrucosaAY545111EU071449EU071462EU086517/HM104293
Grimpella thaumastocheirHM104246HM104259AJ628209
Hapalochlaena fasciataGQ900711AB430529AB573212
Hapalochlaena lunulataAB191113AB430530AB573213
Hapalochlaena maculosaAY545107AF000043AB573214AY545171
Megaleledone setebosEF102195EF102174EF102154EF102114
Muusoctopus eicomarKM459467KM459480KM459495
Muusoctopus eurekaHM572155HM572170HM572191HM572221
Muusoctopus januariiEF016344EF016335HM572188EF016318/EF016311
Muusoctopus johnsonianusHM572162EF016333HM572197
Muusoctopus levisFJ428007FJ428012EF016323
Muusoctopus longibrachusKC792311KF774314KC792302HM572219
Muusoctopus oregonensisFJ603543HM572180FJ603538GQ226016
Muusoctopus profundorumFJ603542HM572176FJ603537GQ226022
Muusoctopus rigbyaeFJ428011FJ428014FJ603528HM572226
Muusoctopus thieleiFJ428009HM572185HM572198
Muusoctopus yaquinaeFJ603539HM572182FJ603532
Octopus bimaculatusKT581981KT581981KT581981KT335846
Octopus bimaculoidesKC792308KF774309KC792299AY545172
Octopus californicusHM572164AF377968HM572187HM572214
Octopus conispadiceusAB191116AB430533AB573222
Octopus cyaneaGQ900721AB430535AB573224
Octopus fitchiKT335838KT335832KT335844
Octopus hongkongensisAB302174AB430538AB573221
Octopus insularisKF843968KP056555KX219649MH550449
Octopus kaurnaAY545106AY545188AJ628227AY545169
Octopus laqueusAB302177AB430543AB573215
Octopus mayaKC792312KF774310KC792303
Octopus mimusKC792313KF774308KC792305KT335848
Octopus oliveriGQ900712AB430532AB573226
Octopus pallidusAJ252754KP693817AJ628236
Octopus parvusAB191106AB430544AB573216
Octopus rubescensAJ252755HM431980KC792306AY545170
Octopus salutiiAJ390323KC894941AJ250484
Octopus tehuelchusAJ252761GU355936GU355937
Octopus tetricusKJ605236MH289826KJ60530
Octopus vulgarisKC792315KF774311KC792307HM104297
Octopus wolfiAJ311111AB430545AB573227
Opisthoteuthis depressaAB191117AB191282
Opisthoteuthis massyaeAY545103AY545187EU071451HM104301
Pareledone aequipapillaeEF102201EF102179EF102160EF102119
Pareledone albimaculataEF102203EF102182EF102162EF102122
Pareledone aurataEF102199EF102177EF102158EF102118
Pareledone charcotiEF102197EF102175EF102156EF102115
Pareledone cornutaEF102207EF102185EF102165EF102125
Pareledone felixEF102205GU806449EF102163
Pareledone panchromaEF102214EF102193EF102172EF102133
Pareledone serperastrataEF102209EF102187EF102167EF102127
Pareledone subtilisEF102210EF102189EF102169EF102129
Pareledone turquetiEF102213EF102192EF102171EF102132
Paroctopus diguetiKT335839KT335833KT335845
Praealtus paralbidaHM104247HM104261HM104252
Robsonella fontanianaKC792310KF774313KC792301
Scaeurgus unicirrhusAJ390324HM104263AJ012129HM104298
Stauroteuthis gilchristiAY545102AY545186EU071450
Thaumeledone gunteriAF299266AY557521EU148470EU086513
Thaumeledone peninsulaeEU148474EU071446EU071458EU086514
Thaumeledone rotundaEU071432EU071445EU071456EU086512
Vampyroteuthis infernalisDQ280043AF000071GU288521AY545163
Velodona togataEU071434EU071447EU071459EU086515
Vulcanoctopus hydrothermalisHM572163HM104264HM572200GQ226020/HM104300

Species included in phylogenetic analyses from GenBank.

Results

Xia’s test found no saturation of coding genes (COI: Iss = 0.170 < Iss.c = 0.732, P < 0.001 and COIII: Iss = 0.210 < Iss.c = 0.702, P < 0.001). jModeltest result in a different substitution model for each gene (16S: HKY85 + G; COI: GTR + I; COIII: TN93 + G + I) (BIC, Table 3). The consensus of 9,000 phylogenetic trees from MrBayes showed high posterior probabilities (PP values > 0.9) for most of the nodes (Figure 2). ML trees from IQ-TREE reported the same topology with high bootstrap support (>70, Figure 2).

TABLE 3

GeneModel#ParametersBIClnL
16STN93 + G1214382.08−1578.34
COIGTR + I1107948.06−3401.50
COIIITN93 + G + I1187511.33−3150.34
RHOT92 + G926934.84−3014.33

Results of substitution model selection for each gene.

BIC, Bayesian Information Criterion; lnL, likelihood values.

FIGURE 2

FIGURE 2

Gene tree of octopuses from New Zealand inferred from the partitioned data set (16S, COI, COIII). Node values show posterior probabilities above 0.50 for Bayesian analysis and bootstrap over 50 for Maximum Likelihood analysis. The vertical lines correspond to the groups found with subsequent probabilities greater than 0.95 in the species delimitation analysis.

Species Delimitation

Species delimitation using bPTP agreed in defining the clusters of our dataset, with both analyses identifying 12 entities of New Zealand octopuses with posterior probabilities of conspecificity ranging from 0.90 to 1.0 (Figure 2). In this phylogeny, we found four clades within the Incirrata: Clade 1, compound by A. nodosus (Lightfoot, 1786); and Clade 2 compound by four species of deep-sea dwelling Graneledone and Thaumeledone (family Megaleledonidae), all of them recognized by a single sucker row. Within this clade, the reciprocal monophyly between G. taniwha taniwhaO’Shea, 1999 and G. taniwha kubodera (O’Shea, 1999), in addition to the species delimitation analysis (bPTP and ABGD), suggest they would correspond to separate species (Figure 2). In Clade 3, species delimitation analyses evidenced two species, Enteroctopus zealandicus (Benham, 1944) and Muusoctopus tangaroa (O’Shea, 1999); whereas Clade 4 was compound by species of the family Octopodidae: P. cordiformis (Quoy and Gaimard, 1832), Octopus mernoo (O’Shea, 1999), Octopus huttoni (Benham, 1943) and Octopus campbelli (Smith, 1902) (Figure 2). Species delimitation analyses with ABGD for both coding genes (COI and COIII) identified 12 genetic groups of 11 morphological species based on p-distances on the gene tree (Figure 2).

Molecular Phylogeny

The consensus tree from the Bayesian analysis of the combined sequences (GenBank and new sequences) had high posterior probability values (>0.95) for most nodes, and a similar topology compared to the ML tree (Figure 2). The ML tree from IQ-TREE had a better topology, resolving the polytomies present in the Bayesian tree with high bootstrap support (>70, Figure 3, Mendeley Dataset: DOI: 10.17632/5vkm46hm49.2). For this reason, we present the ML tree with posterior probability values from the Bayesian analysis. Within this tree, the genus Octopus is polyphyletic, probably related to the fact that many Octopus species are poorly described (c.f. Norman and Hochberg, 2005). New Zealand benthic octopuses are placed in clades that correspond to three distinct families. Clade 1, Enteroctopodidae, is compound by the species Enteroctopus dofleini (Wülker, 1910) from Alaska, Enteroctopus megalocyathus from Chile and E. zealandicus from New Zealand (Figure 3). In the same clade, Muusoctopus thielei (Robson, 1932) from Kerguelen is closely related to M. oregonensis (Voss and Pearcy, 1990) from the North Pacific and M. tangaroa from New Zealand. Within clade 2, Megaleledonidae, Thaumeledone zeissO’Shea, 1999 was included in a clade comprising T. gunteri (Robson, 1930), T. rotunda (Hoyle, 1885) and T. peninsulae (Allcock, Collins, Piatkowski and Vecchione, 2004) from Antarctica (Figure 3). In the same clade, Graneledone taniwha taniwha and G. taniwha kubodera are sister taxa, as G. challengeri (Berry, 1916) and G. antarctica (Voss, 1976) (Figure 3). Clade 3 comprised the family Octopodidae (Figure 3), where P. cordiformis was a sister species of Grimpella thaumastocheir (Robson, 1928), both species nearly related to the Octopus s.l. clade composed by Indo-Pacific species. The phylogenetic position of P. cordiformis and G. thaumastocheir was similar to previous phylogenetic analysis, with the absence of ink sac in G. thaumastocheir being an apparent adaptation to deep sea (Guzik et al., 2005; Strugnell et al., 2014). Octopus campbelli, O. huttoni and O. mernoo formed a monophyletic group with Robsonella fontaniana (d’Orbigny, 1834) from Chile, Scaeurgus unicirrhus (Delle Chiaje in d’Orbigny, 1841) from the Atlantic, and O. pallidus (Hoyle, 1885), from Australia. Clade 4 was composed of O. fitchi (Berry, 1953), Paroctopus digueti (Perrier and Rochebrune, 1894) from Northeastern Pacific and O. tehuelchus (d’Orbigny, 1834), from the Southwest Atlantic (Figure 3). Clade 5 included Ameloctopus litoralis (Norman, 1992) from Australia, Cistopus (Gray, 1849) and Octopus s. l. from the West Pacific. Clade 6 included Abdopus aculeatus (d’Orbigny, 1834), O. cyanea (Gray, 1849), and O. laqueus (Kaneko and Kubodera, 2005) from the West Pacific (Figure 3). Clade 7 contained the genus Amphioctopus (Fischer, 1882) and Hapalochlaena (Robson, 1929), from the West Pacific (Figure 3). Finally, clade 8 was composed by octopodid species including O. oliveri (Berry, 1914) with members of the Octopus sensu stricto clade including O. tetricus (Gould, 1852), from Australia/New Zealand and others from America (Figure 3).

FIGURE 3

FIGURE 3

Phylogram of octopuses from the partitioned data set (16S, COI, COIII, RHO) including sequences from the present study and from GenBank. Node values show posterior probabilities above 0.50 for Bayesian Inference and bootstrap over 50 for Maximum Likelihood analysis. Species in blue are from New Zealand.

Discussion

This study evidenced that benthic octopuses from New Zealand have different phylogenetic and biogeographic origins. Our review based on museum collections and phylogenetic analyses indicated that the New Zealand octopod fauna is composed of 16 species distributed in eight genera. This is a low diversity compared to tropical regions, but higher than cold and temperate ecosystems (Rosa et al., 2019). Only four shallow-water species [Octopus mernoo, O. campbelli, O. kaharoaO’Shea, 1999 and Callistoctopus kermadecensis (Berry, 1914)], and six deep-sea species (Graneledone taniwha taniwha, G. taniwha kubodera, Thaumeledone zeiss, T. marshalli, M. tegginmathae, and M. tangaroa) are endemic to New Zealand. The remaining octopuses are widely distributed and are known to occur near Australia and Japan (Octopus oliveri, O. huttoni, O. sinensis, O. tetricus, P. cordiformis, and G. challengeri).

New Zealand Octopus Systematics

The most complete information to date on octopod fauna from New Zealand waters correspond to O’Shea’s (1999) monograph; however, considering the limitation imposed by the lack of any genetic analysis, identifying octopuses solely using O’Shea’s descriptions can be challenging. Norman et al. (2014) were critical on this revision and questioned the validity of some species (e.g., Thaumeledone, Pinnoctopus). In fact, Norman and Hochberg (2005) placed several species from New Zealand in different genera than those proposed by O’Shea (1999) (e.g., P. cordiformis and P. kermadecensis). O’Shea (1999) resurrected P. cordiformis designating a neotype in the absence of type material, but other authors argued that morphologically, this species is a senior synonym of Macroctopus maorum (Hutton, 1880) (Robson, 1929; Norman and Hochberg, 2005). Our phylogenetic results added to the review of the neotype (NIWA 43044, H-668) agreed with O’Shea (1999) and suggest placing the currently recognized species Octopus cordiformis in the genus Pinnoctopus. Similarly, previous studies also placed P. kermadecensis within the genus Callistoctopus (Norman and Hochberg, 2005; Reid and Wilson, 2015); however, molecular information would first be required in order to confirm the valid status of the species. In this context, O’Shea (1999) suggested both Macroctopus and Callistoctopus are junior synonyms of Pinnoctopus, and Voss (1981) suggested that no valid basis exist for recognizing any distinction between Callistoctopus and Octopus. Therefore, and based on this information, our study suggests that P. cordiformis and P. kermadecensis would remain as the correct names. Indeed, the name P. cordiformis has been consistently used in several studies recently carried out in New Zealand and Australia (see Carrasco, 2014; Orbach and Kirchner, 2014; Briceño et al., 2015, 2016).

In the present study, most New Zealand octopodids (P. cordiformis, O. campbelli, O. huttoni and O. mernoo) were found within Clade 3 (see Figure 3), sharing a common ancestor with other Pacific species from different genera (Grimpella, Octopus, Robsonella, and Scaeurgus). In fact, Robson (1929) observed morphological similarities between Robsonella and Scaeurgus in the terminal organ’s shape and the presence of a ligula with robust cheeks. The specimens examined from our Clade 3 (New Zealand and Chile) shared a similar hectocotylus shape, suggesting this clade require a new classification. Our genetic analyses suggest that some shallow-water, small-bodied octopuses from New Zealand (Octopus campbelli, O. huttoni, and O. mernoo) currently placed in Octopus sensu lato would belong to the Robsonella clade. In fact, Adam (1938) recognized only two species (R. fontaniana and R. campbelli), while Pickford (1955) recognized three species (R. fontaniana, R. campbelli, and R. huttoni). Clearly all these species share a recent common ancestor and have similar morphologies. Based on this information, we suggest identifying the New Zealand species O. campbelli, O. huttoni and O. mernoo as species within the genus Robsonella, as they shared several morphological features (radula, skin, hectocotylus) following the diagnosis of the genus (Ibáñez et al., 2008). Other authors have also used this identification (Sweeney and Roper, 1998; Sweeney, 2017).

Our DNA sequence data suggests that there was a close relationship (99% similarity in 16S and COIII, and 100% similarity in COI) between E. zealandicus (yellow octopus) from New Zealand and E. megalocyathus (red octopus) from Chile, relationship that deserve an improved revision as Hudelot (2000) also suggested that E. magnificus (Villanueva et al., 1992) and E. zealandicus may be conspecific. Both species (E. zealandicus and E. megalocyathus) are similar but have slight differences in morphometric, meristic measurements and coloration, which require further investigation (M.C. Pardo-Gandarillas et al. unpublished data). Norman and Hochberg (2005) and Jereb et al. (2014) classified Octopus oliveri in Octopus sensu lato provisionally, but our phylogenetic analysis suggests that this species is a close relative to the Octopus sensu stricto group to retain it in this genus. Another species not included in our genetic study, a recently described species from the Kermadec Islands (Octopus jollyorum;Reid and Wilson, 2015) has been suggested as a junior synonym of O. sinensis (d’Orbigny, 1841) (Amor et al., 2017), although Gleadall (2016) identified them as different species with clear morphological differences.

The finding of reciprocal monophyly and species delimitation analyses suggested that the subspecies G. taniwha taniwha and G. taniwha kubodera are different species. Both sub-species have similar morphological features, including suckers, gills, and wart counts (Ibáñez et al., 2012). O’Shea (1999) suggested that future descriptions of Graneledone species should provide more morphological detail (cartilaginous cluster distribution and composition, and arm sucker counts), and proposed that the only way to differentiate these two species is by the number of cartilaginous processes per cluster (i.e., G. taniwha taniwha 1–37 and G. taniwha kubodera 4–13). Similarly, specimens of each taxon were also examined here, suggesting they had different wart head counts (i.e., G. taniwha taniwha 10–14, G. taniwha kubodera 5–8) and confirming the distinction observed within the molecular phylogeny.

The genus Benthoctopus is not sustainable, as Gleadall et al. (2010) pointed out that Benthoctopus is a junior synonym of Bathypolypus and identified species in genus Benthoctopus as species of Muusoctopus. Therefore, there is no reason in retaining both Benthoctopus and Muusoctopus (e.g., Norman et al., 2014). In this context, Ibáñez et al. (2016) also suggested (based on morphology and genetics) that all New Zealand species of Benthoctopus should be included within the genus Muusoctopus. Future research should therefore target to compare morphometrics and genetic data to specifically determine the number of Muusoctopus species present in New Zealand waters.

Octopus Phylogeny

The phylogeny reported here contains several groups, represented by the families Bathypolypodidae, Eledonidae, Megaleledonidae, Enteroctopodidae, and Octopodidae (Figure 3). Within Octopodidae, we recognized two monophyletic groups, one composed by Octopus sensu stricto (Clade 8) and the other by species of the genera Amphioctopus and Hapalochlaena (Clade 7). Two other groups were paraphyletic, being composed by species of Octopus sensu lato (Clades 3, 4, and 5) in addition to Abdopus, Callistoctopus, Cistopus, Pinnoctopus, Robsonella, and Scaeurgus. Our finding of Octopus as a polyphyletic group is consistent with previous studies (e.g., Strugnell et al., 2005; Lindgren et al., 2012; Ibáñez et al., 2014, 2018), suggesting that the genus Octopus need an urgent revision.

Recent studies carried out by Strugnell et al. (2014) evaluated the phylogenetic relationships of 23 octopods using four mitochondrial and three nuclear genes, and evidenced a similar topology compared to that obtained with our fewer genes (three mtDNA regions) and higher number of species (88 spp. in five families; see Figure 3). In this context, increasing the coverage of species and including additional characters is a well-recognized approach to improve phylogenetic analyses (Graybeal, 1998; Poe and Swofford, 1999; Rosenberg and Kumar, 2003), suggesting that our phylogeny is a solid estimation of the evolutionary relationships. Since our phylogenetic reconstruction was based only on three mitochondrial genes and one nuclear gene, it is plausible to expect that the inclusion of more markers would improve our understanding of the evolutionary relationships of the New Zealand octopuses. However, the polyphyletic nature of the genus Octopus is clearly an artifact of poorly described species being placed into the genus because of uncertainty about their true taxonomic positions (sensu Norman and Hochberg, 2005). As suggested by previous authors (Gleadall, 2004; Kaneko et al., 2011), Octopus systematics still requires an extensive revision in order to solve some of the difficulties in finding informative morphological characters. Based on this information, we suggest that several species included in Clade 1 (representing the family Enteroctopodidae) may not belong to the genus Octopus (e.g., O. californicus, O. conispadiceus, O. hongkongensis).

The presence in New Zealand of 16 species of benthic octopus from different genera and environments suggests a history of several radiations from tropical and cold-water ancestors. Most octopuses included in the present study inhabit the Indo-Pacific, a region that based on the high diversity of benthic octopuses is recognized as the potential origin of the family Octopodidae, and from where many species radiated worldwide (Rosa et al., 2019). Close biogeographic relationships of benthic octopuses from New Zealand, Australia and the Southern Ocean have been recently revealed (Rosa et al., 2019), confirming the taxonomic relationships proposed by O’Shea (1999). The close phylogenetic relationships of the New Zealand O. campbelli, O. huttoni and O. mernoo with O. pallidus from Australia and R. fontaniana from South America is probably related to dispersal events after the circumpolar current was established during the Cenozoic (Strugnell et al., 2008). The same pattern would be expected for the Octopus s.s. clade with species from America, Australia and New Zealand, and the Mediterranean, which suggests a classic Tethyan distribution. For the deep-sea species of the genera Graneledone and Thaumeledone, an Antarctic origin is probable based on the findings by Strugnell et al. (2008). In the case of Muusoctopus, dispersal events from the North Pacific to the Southern Ocean and Atlantic (Gleadall, 2013) and from the Atlantic to the Southern Ocean (Ibáñez et al., 2016) have been previously proposed. The molecular phylogenetic approach presented here has added important information to the current systematics of the New Zealand octopod fauna; nonetheless, further studies are still required considering larger sampling sizes and a mixture of both mitochondrial and nuclear molecular markers to properly clarify their biogeographic origin and diversification.

Statements

Data availability statement

All datasets generated for this study are included in the article/supplementary material.

Ethics statement

The animal study was reviewed and approved by the Universidad Andres Bello.

Author contributions

CI and MP-G conceived the idea, designed the study, analyzed the data, and led the writing of the manuscript. MF, SC, and PR collaborated in writing and provided editorial advice. All authors have read and commented on the manuscript.

Funding

This study was supported by the NIWA Internal Project CDTT 1607 “New Zealand octopus phylogeny” and the Victoria University funding. This work was partially funded by FONDECYT research grants 1181153, 11170617 and 11181320, awarded to CI, SC, and MP-G, respectively. The additional support from the INACH research grant RG 50-18 awarded to MP-G is also appreciated.

Acknowledgments

We appreciate the assistance of Keith Michael, Sadie Mills, Diana Macpherson, Fabiola Peña, Angela Fleming, Simon Morton, Darren W. Stevens, and Dean Stotter during laboratory procedures and sampling. Special thanks to Ian Gleadall for his valuable input on octopus systematics.

Conflict of interest

MF was employed by company National Institute of Water and Atmospheric Research, Ltd.

The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Summary

Keywords

taxonomy, Cephalopoda, Octopodiformes, species delimitation, octopus

Citation

Ibáñez CM, Fenwick M, Ritchie PA, Carrasco SA and Pardo-Gandarillas MC (2020) Systematics and Phylogenetic Relationships of New Zealand Benthic Octopuses (Cephalopoda: Octopodoidea). Front. Mar. Sci. 7:182. doi: 10.3389/fmars.2020.00182

Received

01 October 2019

Accepted

09 March 2020

Published

31 March 2020

Volume

7 - 2020

Edited by

Wei-Jen Chen, National Taiwan University, Taiwan

Reviewed by

Joao Braullio Luna Sales, Federal University of Pará, Brazil; Philippe Borsa, Institut de Recherche Pour le Développement (IRD), France

Updates

Copyright

*Correspondence: Christian M. Ibáñez, M. Cecilia Pardo-Gandarillas,

This article was submitted to Marine Evolutionary Biology, Biogeography and Species Diversity, a section of the journal Frontiers in Marine Science

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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