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ORIGINAL RESEARCH article

Front. Psychiatry
Sec. Behavioral and Psychiatric Genetics
Volume 15 - 2024 | doi: 10.3389/fpsyt.2024.1384298
This article is part of the Research Topic The Interaction of Rare and Common Genetic Variation in Psychiatric Disorders View all 3 articles

Cross-continental environmental and genome-wide association study on children and adolescent anxiety and depression

Provisionally accepted
Bishal Thapaliya Bishal Thapaliya 1,2*Bhaskar Ray Bhaskar Ray 1,2Britny Farahdel Britny Farahdel 1,2Pranav Suresh Pranav Suresh 1,2Ram Sapkota Ram Sapkota 2Bharath Holla Bharath Holla 3Jayant Mahadevan Jayant Mahadevan 3Jiayu Chen Jiayu Chen 2Nilakshi Vaidya Nilakshi Vaidya 3Nora I. Perrone-Bizzozero Nora I. Perrone-Bizzozero 4Vivek Benegal Vivek Benegal 3Gunter Schumann Gunter Schumann 5Vince D. Calhoun Vince D. Calhoun 2,6Jingyu Liu Jingyu Liu 2
  • 1 Georgia State University, Atlanta, United States
  • 2 Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Atlanta, Colorado, United States
  • 3 Center for Addiction Medicine, National Institute of Mental Health and Neuro Sciences, Bangalore, Karnataka, India
  • 4 Department of Neurosciences, School of Medicine, University of New Mexico, Albuquerque, New Mexico, United States
  • 5 Department of Psychiatry and Psychotherapy, Charité University Medicine Berlin, Berlin, Baden-Wurttemberg, Germany
  • 6 Georgia Institute of Technology, Atlanta, Georgia, United States

The final, formatted version of the article will be published soon.

    Anxiety and depression in children and adolescents warrant special attention as a public health concern given their devastating and long-term effects on development and mental health. Multiple factors, ranging from genetic vulnerabilities to environmental stressors, influence the risk for the disorders. This study aimed to understand how environmental factors and genomics affect children and adolescents anxiety and depression across three cohorts: Adolescent Brain and Cognitive Development Study (US, age of 9-10; N=11,875), Consortium on Vulnerability to Externalizing Disorders and Addictions (INDIA, age of 6-17; N=4,326) and IMAGEN (EUROPE, age of 14; N=1888). We performed data harmonization and identified the environmental impact on anxiety/depression using a linear mixed-effect model, recursive feature elimination regression, and the LASSO regression model. Subsequently, genome-wide association analyses with consideration of significant environmental factors were performed for all three cohorts by mega- analysis and meta-analysis, followed by functional annotations. The results showed that multiple environmental factors contributed to the risk of anxiety and depression during development, where early life stress and school support index had the most significant and consistent impact across all three cohorts. In both meta, and mega-analysis, SNP rs79878474 in chr11p15 emerged as a particularly promising candidate associated with anxiety and depression, despite not reaching genomic significance. Gene set analysis on the common genes mapped from top promising SNPs of both meta and mega analyses found significant enrichment in regions of chr11p15 and chr3q26, in the function of potassium channels and insulin secretion, in particular Kv3, Kir-6.2, SUR potassium channels encoded by the KCNC1, KCNJ11, and ABCCC8 genes respectively, in chr11p15. Tissue enrichment analysis showed significant enrichment in the small intestine, and a trend of enrichment in the cerebellum. Our findings provide evidences of consistent environmental impact from early life stress and school support index on anxiety and depression during development and also highlight the genetic association between mutations in potassium channels, which support the stress-depression connection via hypothalamic-pituitary-adrenal axis, along with the potential modulating role of potassium channels.

    Keywords: Anxiety, Depression, regression, Meta-analysis, Mega analysis, GWAS

    Received: 09 Feb 2024; Accepted: 17 Apr 2024.

    Copyright: © 2024 Thapaliya, Ray, Farahdel, Suresh, Sapkota, Holla, Mahadevan, Chen, Vaidya, Perrone-Bizzozero, Benegal, Schumann, Calhoun and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Bishal Thapaliya, Georgia State University, Atlanta, United States

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.