Frontiers in Bioinformatics

Original Research

Published on 19 Nov 2021

Advanced Data Analysis for Fluorescence-Lifetime Single-Molecule Localization Microscopy

in Computational BioImaging

Jan Christoph Thiele
Oleksii Nevskyi
Dominic A. Helmerich
Markus Sauer
Jörg Enderlein

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.740281

4,896 views
10 citations

Original Research

Published on 11 Nov 2021

Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq

in Network Bioinformatics

Makoto Kashima
Yuki Shida
Takashi Yamashiro
Hiromi Hirata
Hiroshi Kurosaka

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.777299

7,004 views
9 citations

Original Research

Published on 08 Nov 2021

Development of a Machine Learning Classifier for Brain Tumors Diagnosis Based on DNA Methylation Profile

in Network Bioinformatics

Yuxing Chen
Yixin Yan
Moping Xu
Wen Chen
Jinyu Lin
Yan Zhao
Junze Wu
Xianlong Wang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.744345

4,365 views
6 citations

Technology and Code

Published on 08 Nov 2021

Integrated Cells and Collagen Fibers Spatial Image Analysis

in Computational BioImaging

Georgii Vasiukov
Tatiana Novitskaya
Maria-Fernanda Senosain
Alex Camai
Anna Menshikh
Pierre Massion
Andries Zijlstra
Sergey Novitskiy

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.758775

6,598 views
5 citations

Original Research

Published on 08 Nov 2021

VTR: A Web Tool for Identifying Analogous Contacts on Protein Structures and Their Complexes

in Data Visualization

Vitor Pimentel
Diego Mariano
Letícia Xavier Silva Cantão
Luana Luiza Bastos
Pedro Fischer
Leonardo Henrique Franca de Lima
Alexandre Victor Fassio
Raquel Cardoso de Melo-Minardi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.730350

8,055 views
10 citations

Methods

Published on 04 Nov 2021

Efficient Cross-Correlation Filtering of One- and Two-Color Single Molecule Localization Microscopy Data

in Computational BioImaging

Angel Mancebo
Dushyant Mehra
Chiranjib Banerjee
Do-Hyung Kim
Elias M. Puchner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.739769

3,501 views
7 citations

Original Research

Published on 03 Nov 2021

A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks

in Protein Bioinformatics

Yongcheng Mu
Salim Sazzed
Maytha Alshammari
Jiangwen Sun
Jing He

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.710119

4,907 views
14 citations

Methods

Published on 28 Oct 2021

3D Structure From 2D Microscopy Images Using Deep Learning

in Computational BioImaging

Benjamin Blundell
Christian Sieben
Suliana Manley
Ed Rosten
QueeLim Ch’ng
Susan Cox

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.740342

9,883 views
5 citations

Perspective

Published on 27 Oct 2021

Chromatin Network Analyses: Towards Structure-Function Relationships in Epigenomics

in Network Bioinformatics

Vera Pancaldi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.742216

5,679 views
10 citations

Original Research

Published on 26 Oct 2021

Automated Machine-Learning Framework Integrating Histopathological and Radiological Information for Predicting IDH1 Mutation Status in Glioma

in Computational BioImaging

Dingqian Wang
Cuicui Liu
Xiuying Wang
Xuejun Liu
Chuanjin Lan
Peng Zhao
William C. Cho
Manuel B. Graeber
Yingchao Liu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.718697

3,515 views
4 citations

Original Research

Published on 26 Oct 2021

Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance

in Computational BioImaging

HoChan Cheon
Andrey Kan
Giulio Prevedello
Simone C. Oostindie
Simon J. Dovedi
Edwin D. Hawkins
Julia M. Marchingo
Susanne Heinzel
Ken R. Duffy
Philip D. Hodgkin

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.723337

4,049 views
11 citations

Methods

Published on 25 Oct 2021

InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network

in Protein Bioinformatics

Isak Johansson-Åkhe
Claudio Mirabello
Björn Wallner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.763102

5,753 views
14 citations

Original Research

Published on 22 Oct 2021

Diagnostic AI Modeling and Pseudo Time Series Profiling of AD and PD Based on Individualized Serum Proteome Data

in Integrative Bioinformatics

Jianhu Zhang
Xiuli Zhang
Yuan Sh
Benliang Liu
Zhiyuan Hu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.764497

3,925 views
3 citations

Original Research

Published on 20 Oct 2021

Spatiotemporal Clustering of Repeated Super-Resolution Localizations via Linear Assignment Problem

in Computational BioImaging

David J. Schodt
Keith A. Lidke

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.724325

2,022 views
5 citations

Original Research

Published on 18 Oct 2021

K-Neighbourhood Analysis: A Method for Understanding SMLM Images as Compositions of Local Neighbourhoods

in Computational BioImaging

Kristen Feher
Matthew S. Graus
Simao Coelho
Megan V. Farrell
Jesse Goyette
Katharina Gaus

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.724127

2,423 views

Original Research

Published on 15 Oct 2021

Fourier Ring Correlation and Anisotropic Kernel Density Estimation Improve Deep Learning Based SMLM Reconstruction of Microtubules

in Computational BioImaging

Andreas Berberich
Andreas Kurz
Sebastian Reinhard
Torsten Johann Paul
Paul Ray Burd
Markus Sauer
Philip Kollmannsberger

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.752788

4,116 views
3 citations