Frontiers in Bioinformatics

Original Research

Published on 13 Aug 2026

RLNSF-MDA: reliability-guided graph-regularized matrix factorization for immune-related miRNA–disease association prediction

in RNA Bioinformatics

Xin Li
Yaoyu Liu
Ming Xu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1926188

254 views

Original Research

Published on 12 Aug 2026

A microbe–drug association prediction model based on graph attention networks and rotation forest

in Drug Discovery in Bioinformatics

Jing Li
Juncai Li
Qijia Chen
Zhong Wang
Xianzhi Liu
Mingmin Liang
Junzhuang Wang
Hongyuan Ding
Bin Zeng
Lei Wang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1871436

274 views

Perspective

Published on 12 Aug 2026

Agentic AI for trustworthy synthetic microbial genomics: a perspective on generation, validation, and governance

in Genomic Analysis

Fahim Sufi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1903746

264 views

Original Research

Published on 12 Aug 2026

Single cell mapping of B and T cell dynamics in breast cancer lymph node metastasis

in Single Cell Bioinformatics

Sajid Khan
Sabahat Jamil
Muhammad Hamza
Zarlish Attique
Suping Zhang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1833416

310 views

Brief Research Report

Published on 12 Aug 2026

Detecting poliovirus sequences in the sequence read archive database using bioinformatics tools

in Genomic Analysis

Katie Farrell
Kevin Tang
Melchizedek Mashiku
Dawit Abay
Joseph Longo
Edward Ramos
Gabriel Leventhal-Douglas
Margaret Rohrbaugh
Paul Chenoweth
Cara C. Burns

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1856011

274 views

Technology and Code

Published on 12 Aug 2026

rMAP-Candida: a modular Dockerized WDL/Cromwell workflow for reproducible Candida species typing, assembly-contiguity assessment, antifungal-resistance marker screening, and phylogenomic surveillance

in Genomic Analysis

Gerald Mboowa
Ivan Sserwadda
Stephen Kanyerezi
Benson R. Kidenya
Jonani Bwambale
Benson Musinguzi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1896572

286 views

Original Research

Accepted on 11 Aug 2026

IN SILICO AND IMMUNOINFORMATIC APPROACH TO DESIGN A MULTI-EPITOPE MRNA VACCINE TARGETING ALL MAJOR HUMAN-INFECTING GENOTYPES OF HEPATITIS E VIRUS

in Drug Discovery in Bioinformatics

Maham Mehrangaze Khonza
Zain Saeed
Zohra Jabeen
Wafaa Arab
Sehrish Kakakhel
Maham Yamin
MAZEN GHAITH
Ali Zohaib
Aneela Javed
Rwaa H. Abdulal

Frontiers in Bioinformatics

Original Research

Accepted on 11 Aug 2026

DZIP3 is associated with the cytoskeletal dynamics in glioblastoma and mitochondrial machinery regulation

in Protein Bioinformatics

Khadija Bichri
Meryeme Chihab Eddine
Mohammed Sqalli Houssaini
Mounir Rghioui
Imad El Badisy
Bouchra GHAZI

Frontiers in Bioinformatics

Original Research

Accepted on 11 Aug 2026

Gene functions determine stochastic or adaptive futile transcription in cancers through deregulated start site deployments

in Integrative Bioinformatics

Aditi Lakshmi Satish
Praveen Kumar
Ishani Morbia
Umashankar Singh

Frontiers in Bioinformatics

Technology and Code

Published on 11 Aug 2026

PUDU (pipeline for universal diversity unveiling): an accessible end-to-end workflow for taxonomic profiling and ecological visualization of environmental microbiomes across amplicon, shotgun, and long-read sequencing

in Integrative Bioinformatics

Alejandro Medaglia-Mata
Pablo Rojas-Rodríguez
Vojtěch Bystrý
Rossy Guillén-Watson
Olman Gómez-Espinoza
Kattia Núñez-Montero

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1909327

312 views

Correction

Published on 11 Aug 2026

Correction: Transcriptome-informed metabolic modeling reveals astrocyte-specific vulnerabilities in mild cognitive impairment and Alzheimer’s disease progression

in Integrative Bioinformatics

Andrea Angarita-Rodríguez
Viviana Vargas-López
Andrés Pinzón
Adrián Sandoval-Hernandez
Kai Kang
Leping Li
Jason Papin
Pedro Puentes-Rozo
Andrés Felipe Aristizábal
Janneth González

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1953979

140 views

Original Research

Published on 11 Aug 2026

Design and in silico evaluation of Thiazole–Isoxazole hybrids as PPARγ-Targeted antidiabetic agents

in Drug Discovery in Bioinformatics

Abhirami PV
Gupta Dheeraj Rajesh
N. V. L. Sirisha Mulukuri
Ranjitha A
Niyas Rehman
Shiv Basant Kumar
Dileep Kumar
Pankaj Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1873262

477 views

Original Research

Accepted on 10 Aug 2026

Conformational Dynamics of Fuzzy Interfaces in Disordered Protein Complexes: Mapping Key Residues and Binding Modes Beyond NMR Models

in Protein Bioinformatics

María Laura Fernández
María Clara Bastien
Franco G. Tavolaro
Cristina Marino-Buslje

Frontiers in Bioinformatics

Original Research

Accepted on 10 Aug 2026

Alternative Splicing Remodeling and Splicing Factor Regulatory Networks Define Immune-Associated Molecular Heterogeneity in Dilated Cardiomyopathy

in Integrative Bioinformatics

Jia Li
Yiyu He
Xianxian Zhao
Zhifu Guo
Jinchao Song
Xiaowei Song

Frontiers in Bioinformatics

Original Research

Accepted on 10 Aug 2026

Revealing RELL1 signaling relying on the phosphoregulatory network analysis

in Protein Bioinformatics

Pathiyil Sajini Sekhar
DIYA SANJEEV
Amal Fahma
Suhail Subair
Athira Perunelly Gopalakrishnan
PRATHIK B S
Rajesh Raju
Sowmya Soman

Frontiers in Bioinformatics

Original Research

Accepted on 10 Aug 2026

Integration of Resolving Topological Indices and ADMET Analysis with MCDM Methods (TOPSIS and SAW) for Ranking Breast Cancer Therapeutics

in Drug Discovery in Bioinformatics

Pandeeswari E
Ravi Sankar J

Frontiers in Bioinformatics

Opinion

Accepted on 10 Aug 2026

Ten Key Considerations for Developing Interpretable Risk Prediction Models

in Integrative Bioinformatics

Xi Zhang
Wenjie Xu
David Roy Smith

Frontiers in Bioinformatics

Original Research

Published on 10 Aug 2026

Multiple binding modes underlie Cannabis sativa cannabinoids recognition by peroxisome proliferator-activated receptor gamma

in Drug Discovery in Bioinformatics

N. R. Carina Alves
Justina Miranda
Lautaro D. Alvarez

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1893303

351 views

Original Research

Published on 10 Aug 2026

LungMicroHostR: an R package for integrated host–microbiome analysis of bronchoalveolar lavage fluid metagenomic sequencing data

in Integrative Bioinformatics

Nan Li
Jing Hu
Wanning Tong
Chengdong Liu
Yun Ding
Ning Li
Zhigang Cai

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1906036

309 views

Original Research

Accepted on 07 Aug 2026

All-atoms MD simulations study of newly designed ciprofloxacin derivatives as potential bacterial DHPS and DNA gyrase inhibitors

in Drug Discovery in Bioinformatics

Chita Ranjan Sahoo
Madhusmita Rout
SUDHIR KUMAR PAIDESETTY
Dr. Budheswar Dehury
DEBDUTTA BHATTACHARYA
Sanghamitra Pati

Frontiers in Bioinformatics

121 views

Original Research

Accepted on 07 Aug 2026

Establishing Standardized Evaluation Protocols for Peptide-Target Interaction Prediction: The PTI-TAPE Consensus Framework eDelphi

in Protein Bioinformatics

William Waldock
Guangshun Wang
Ara Darzi
Cesar de la Fuente-Nunez
Hutan Ashrafian

Frontiers in Bioinformatics

Original Research

Published on 07 Aug 2026

Integrated analysis of enzymes, mRNAs, and miRNAs provides insight into the regulatory potential of extracellular vesicles in recipient cell glucose metabolism

in Integrative Bioinformatics

Namita N. Kashyap
Sharath Mohan Bhat
Padmanabha Udupa E. G.
Kavitha S. Shettigar
Vinutha R. Bhat
Dinesh Upadhya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1911554

457 views

Original Research

Published on 07 Aug 2026

AI-enhanced virtual screening identifies a potent small-molecule modulator of ClC-3 for cervical cancer drug discovery

in Drug Discovery in Bioinformatics

Chao Liu
Chongxing Ji

Frontiers in Bioinformatics

doi 10.3389/fbinf.2026.1887419

394 views

Original Research

Accepted on 06 Aug 2026

Evaluation of functional annotation-informed and ancestry-specific polygenic risk scores for ischemic stroke

in Genomic Analysis

Nicole D. Armstrong
Vinodh Srinivasasainagendra
Amit Patki
Lavanya Pilla
Chad Aldridge
Alana Jones
Ulrich Broeckel
Ethan M. Lange
Leslie A. Lange
Pankaj Arora

Frontiers in Bioinformatics

818 articles

articles

RLNSF-MDA: reliability-guided graph-regularized matrix factorization for immune-related miRNA–disease association prediction

A microbe–drug association prediction model based on graph attention networks and rotation forest

Agentic AI for trustworthy synthetic microbial genomics: a perspective on generation, validation, and governance

Single cell mapping of B and T cell dynamics in breast cancer lymph node metastasis

Detecting poliovirus sequences in the sequence read archive database using bioinformatics tools

rMAP-Candida: a modular Dockerized WDL/Cromwell workflow for reproducible Candida species typing, assembly-contiguity assessment, antifungal-resistance marker screening, and phylogenomic surveillance

IN SILICO AND IMMUNOINFORMATIC APPROACH TO DESIGN A MULTI-EPITOPE MRNA VACCINE TARGETING ALL MAJOR HUMAN-INFECTING GENOTYPES OF HEPATITIS E VIRUS

DZIP3 is associated with the cytoskeletal dynamics in glioblastoma and mitochondrial machinery regulation

Gene functions determine stochastic or adaptive futile transcription in cancers through deregulated start site deployments

PUDU (pipeline for universal diversity unveiling): an accessible end-to-end workflow for taxonomic profiling and ecological visualization of environmental microbiomes across amplicon, shotgun, and long-read sequencing

Correction: Transcriptome-informed metabolic modeling reveals astrocyte-specific vulnerabilities in mild cognitive impairment and Alzheimer’s disease progression

Design and in silico evaluation of Thiazole–Isoxazole hybrids as PPARγ-Targeted antidiabetic agents

Conformational Dynamics of Fuzzy Interfaces in Disordered Protein Complexes: Mapping Key Residues and Binding Modes Beyond NMR Models

Alternative Splicing Remodeling and Splicing Factor Regulatory Networks Define Immune-Associated Molecular Heterogeneity in Dilated Cardiomyopathy

Revealing RELL1 signaling relying on the phosphoregulatory network analysis

Integration of Resolving Topological Indices and ADMET Analysis with MCDM Methods (TOPSIS and SAW) for Ranking Breast Cancer Therapeutics

Ten Key Considerations for Developing Interpretable Risk Prediction Models

Multiple binding modes underlie Cannabis sativa cannabinoids recognition by peroxisome proliferator-activated receptor gamma

LungMicroHostR: an R package for integrated host–microbiome analysis of bronchoalveolar lavage fluid metagenomic sequencing data

All-atoms MD simulations study of newly designed ciprofloxacin derivatives as potential bacterial DHPS and DNA gyrase inhibitors

Establishing Standardized Evaluation Protocols for Peptide-Target Interaction Prediction: The PTI-TAPE Consensus Framework eDelphi

Integrated analysis of enzymes, mRNAs, and miRNAs provides insight into the regulatory potential of extracellular vesicles in recipient cell glucose metabolism

AI-enhanced virtual screening identifies a potent small-molecule modulator of ClC-3 for cervical cancer drug discovery

Evaluation of functional annotation-informed and ancestry-specific polygenic risk scores for ischemic stroke