Frontiers in Bioinformatics

Methods

Published on 14 Oct 2021

Insight to Gene Expression From Promoter Libraries With the Machine Learning Workflow Exp2Ipynb

in Network Bioinformatics

Ulf W. Liebal
Sebastian Köbbing
Linus Netze
Artur M. Schweidtmann
Alexander Mitsos
Lars M. Blank

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.747428

4,204 views
8 citations

Review

Published on 12 Oct 2021

The Clinicopathologic and Prognostic Significance of c-Myc Expression in Hepatocellular Carcinoma: A Meta-Analysis

in Network Bioinformatics

Zhao Min
Zhang Xunlei
Chen Haizhen
Zhao Wenjing
Yu Haiyan
Lu Xiaoyun
Zhou Jianyun
Chen Xudong
Shen Aiguo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.706835

3,623 views
10 citations

Technology and Code

Published on 11 Oct 2021

An Efficient GUI-Based Clustering Software for Simulation and Bayesian Cluster Analysis of Single-Molecule Localization Microscopy Data

in Computational BioImaging

Saskia Kutz
Ando C. Zehrer
Roman Svetlitckii
Gülce S. Gülcüler Balta
Lucrezia Galli
Susanne Kleber
Jakob Rentsch
Ana Martin-Villalba
Helge Ewers

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.723915

2,892 views

Perspective

Published on 11 Oct 2021

U-Hack Med Gap Year—A Virtual Undergraduate Internship Program in Computer-Assisted Healthcare and Biomedical Research

in Computational BioImaging

Stephan Daetwyler
Hanieh Mazloom-Farsibaf
Gaudenz Danuser
Rebekah Craig

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.727066

3,043 views
4 citations

Original Research

Published on 05 Oct 2021

Screening of Potent Phytochemical Inhibitors Against SARS-CoV-2 Main Protease: An Integrative Computational Approach

in Drug Discovery in Bioinformatics

Shafi Mahmud
Md. Robiul Hasan
Suvro Biswas
Gobindo Kumar Paul
Shamima Afrose
Mohsana Akter Mita
Mst. Sharmin Sultana Shimu
Maria Meha Promi
Umme Hani
Mohamed Rahamathulla

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.717141

5,015 views
28 citations

Original Research

Published on 29 Sep 2021

PASS: Protein Annotation Surveillance Site for Protein Annotation Using Homologous Clusters, NLP, and Sequence Similarity Networks

in Protein Bioinformatics

Jin Tao
Kelly A. Brayton
Shira L. Broschat

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.749008

2,669 views

Perspective

Published on 22 Sep 2021

Machine Learning for Causal Inference in Biological Networks: Perspectives of This Challenge

in Network Bioinformatics

Paola Lecca

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.746712

38,777 views
35 citations

Original Research

Published on 14 Sep 2021

Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers

in Network Bioinformatics

Hande Beklen
Sema Arslan
Gizem Gulfidan
Beste Turanli
Pemra Ozbek
Betul Karademir Yilmaz
Kazim Yalcin Arga

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.710591

3,355 views
5 citations

Original Research

Published on 10 Sep 2021

NOBIAS: Analyzing Anomalous Diffusion in Single-Molecule Tracks With Nonparametric Bayesian Inference

in Computational BioImaging

Ziyuan Chen
Laurent Geffroy
Julie S. Biteen

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.742073

6,039 views
19 citations

Review

Published on 08 Sep 2021

Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data

in Network Bioinformatics

Markus Hollander
Trang Do
Thorsten Will
Volkhard Helms

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.724297

5,628 views
9 citations

Original Research

Published on 07 Sep 2021

From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics

in Protein Bioinformatics

Alessandra Lima da Silva
Ana Paula de Abreu
Diego Mariano
Felipe Caixeta
Fenícia Brito Santos
Fernanda Stussi D. Lage
Gabriel Quintanilha-Peixoto
Heron. O. Hilário
Joicymara. S. Xavier
Lucio. R. Queiroz

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.711463

4,769 views
2 citations

Original Research

Published on 07 Sep 2021

Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm

in Drug Discovery in Bioinformatics

Kiran Kadam
Noor Peerzada
Rajiv Karbhal
Sangeeta Sawant
Jayaraman Valadi
Urmila Kulkarni-Kale

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.709951

4,728 views
12 citations

Original Research

Published on 06 Sep 2021

Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy

in Network Bioinformatics

Yasmmin Côrtes Martins
Artur Ziviani
Marisa Fabiana Nicolás
Ana Tereza Ribeiro de Vasconcelos

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.731345

5,245 views
3 citations

Original Research

Published on 03 Sep 2021

A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs

in Drug Discovery in Bioinformatics

Georgi I. Kapitanov
Jeffrey R. Chabot
Jatin Narula
Mahua Roy
Hendrik Neubert
Joe Palandra
Vahid Farrokhi
Jay S. Johnson
Robert Webster
Hannah M. Jones

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.731340

5,772 views
4 citations

Original Research

Published on 30 Aug 2021

Mutation Edgotype Drives Fitness Effect in Human

in Network Bioinformatics

Mohamed Ghadie
Yu Xia

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.690769

2,657 views
4 citations

Brief Research Report

Published on 30 Aug 2021

Protein Complex Organization Imposes Constraints on Proteome Dysregulation in Cancer

in Network Bioinformatics

Gökçe Senger
Martin H. Schaefer

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.723482

2,325 views
4 citations