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ORIGINAL RESEARCH article

Front. Genet.

Sec. Genetics of Common and Rare Diseases

This article is part of the Research TopicAdvances in Genetic and Genomic Research for Understanding and Treating Ophthalmic DiseasesView all 9 articles

Genetic Analysis and Clinical characteristics of Sporadic and Familial Congenital Cataracts in Southern Chinese families

Provisionally accepted
Teng  HuangTeng Huang*Hai-Sen  SunHai-Sen SunYa-Nan  LiuYa-Nan LiuQiu-Ling  XieQiu-Ling XieYang  LiuYang LiuXue-Chuan  MiaoXue-Chuan MiaoJin  LiJin Li*
  • Wenzhou Medical University Eye Hospital, Wenzhou, China

The final, formatted version of the article will be published soon.

Introduction: Congenital cataract is a major cause of blindness and severe visual impairment in children. It may occur as an isolated ocular abnormality or in combination with microcornea, microphthalmia, aniridia, or glaucoma. It can also be part of syndromic conditions. Whole-exome sequencing (WES) is now recognized as an appropriate first-line approach for genetic testing in patients with congenital cataract. In this study, we use WES to characterize the genotype spectrum in a pediatric cataract cohort from southern China. Methods: Here, we aimed to clarify the genetic basis of congenital cataract in 40 families from southern China by whole-exome sequencing (WES). All candidate variants were confirmed by Sanger sequencing. After bioinformatic analysis, we prioritized rare or novel variants predicted to have moderate to damaging effects and assessed their segregation within each family. 2 / 30 Results: In this cohort of 40 probands with congenital cataract, pathogenic/likely pathogenic variants were identified in 15 (37.5%) individuals, including six sporadic cases and nine familial cases. The identified variants involved 12 genes (CRYBB3, CRYBB2, CRYGS, CRYAA, GJA8, MIP, NHS, BCOR, COL11A1, PAX6, FTL, and FYCO1). In total, 15 pathogenic/likely pathogenic variants were detected, of which seven were novel.Among genotype-positive patients, seven presented with syndromic cataract, whereas eight had non-syndromic cataract. Discussion: This study performed whole-exome sequencing (WES) in 40 probands with congenital cataracts from southern China and achieved a molecular diagnostic yield of 37.5%. Pathogenic/likely pathogenic variants were predominantly identified in crystallin genes, genes encoding lens membrane proteins, and genes implicated in syndromic forms of disease. Notably, a substantial proportion of apparently sporadic cases harbored variants suggestive of a de novo origin. These findings support the clinical utility of WES in clarifying the genetic basis of genetically heterogeneous congenital cataract. They also underscore the limitations of WES compared with whole-genome sequencing (WGS) and highlight the need for larger cohorts and functional validation of candidate variants.

Keywords: congenital cataract, genetic variants, Southern Chinese families, Sporadic and familial cases, whole-exome sequencing (WES)

Received: 12 Nov 2025; Accepted: 22 Jan 2026.

Copyright: © 2026 Huang, Sun, Liu, Xie, Liu, Miao and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence:
Teng Huang
Jin Li

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