Frontiers in Genetics | Computational Genomics

Technology and Code

Published on 17 Aug 2023

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction

in Computational Genomics

Alexander Freudenberg
Jeremie Vandenplas
Martin Schlather
Torsten Pook
Ross Evans
Jan Ten Napel

Frontiers in Genetics

doi 10.3389/fgene.2023.1220408

2,421 views
1 citation

Original Research

Published on 16 Aug 2023

Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

in Computational Genomics

Xiaoxi Zhang
Seungjun Ahn
Peihua Qiu
Somnath Datta

Frontiers in Genetics

doi 10.3389/fgene.2023.1235927

2,046 views

Methods

Published on 10 Aug 2023

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs

in Computational Genomics

Lisa Fiedler
Martin Middendorf
Matthias Bernt

Frontiers in Genetics

doi 10.3389/fgene.2023.1250907

4,523 views
2 citations

Perspective

Published on 10 Aug 2023

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

in Computational Genomics

Verónica Latapiat
Mauricio Saez
Inti Pedroso
Alberto J. M. Martin

Frontiers in Genetics

doi 10.3389/fgene.2023.1209416

3,300 views
5 citations

Original Research

Published on 09 Aug 2023

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh

in Computational Genomics

Mohammad Tanbir Habib
Saikt Rahman
Mokibul Hassan Afrad
Arif Mahmud Howlader
Manjur Hossain Khan
Farhana Khanam
Ahmed Nawsher Alam
Emran Kabir Chowdhury
Ziaur Rahman
Mustafizur Rahman

Frontiers in Genetics

doi 10.3389/fgene.2023.1220906

3,576 views
3 citations

Methods

Published on 08 Aug 2023

iLncDA-RSN: identification of lncRNA-disease associations based on reliable similarity networks

in Computational Genomics

Yahan Li
Mingrui Zhang
Junliang Shang
Feng Li
Qianqian Ren
Jin-Xing Liu

Frontiers in Genetics

doi 10.3389/fgene.2023.1249171

1,295 views

Editorial

Published on 04 Aug 2023

Editorial: Deep learning for disease prediction in next-generation sequencing and biomedical imaging data

in Computational Genomics

Saurav Mallik
Junichi Iwata
Ruifeng Hu
Tapas Si

Frontiers in Genetics

doi 10.3389/fgene.2023.1260940

1,842 views

Original Research

Published on 04 Aug 2023

Immune-related gene IL17RA as a diagnostic marker in osteoporosis

in Computational Genomics

Ya-Jun Deng
Zhi Li
Bo Wang
Jie Li
Jun Ma
Xiong Xue
Xin Tian
Quan-Cheng Liu
Ying Zhang
Bin Yuan

Frontiers in Genetics

doi 10.3389/fgene.2023.1219894

2,680 views
1 citation

Brief Research Report

Published on 02 Aug 2023

The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction

in Computational Genomics

Darcy Jones
Roberta Fornarelli
Mark Derbyshire
Mark Gibberd
Kathryn Barker
James Hane

Frontiers in Genetics

doi 10.3389/fgene.2023.1186782

2,272 views
2 citations

Original Research

Published on 01 Aug 2023

Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients

in Computational Genomics

Fangfang Ge
Yulu Wang
Amit Sharma
Ulrich Jaehde
Markus Essler
Matthias Schmid
Ingo G. H. Schmidt-Wolf

Frontiers in Genetics

doi 10.3389/fgene.2023.1218276

2,271 views
2 citations

Original Research

Published on 28 Jul 2023

Bioinformatic analysis reveals lysosome-related biomarkers and molecular subtypes in preeclampsia: novel insights into the pathogenesis of preeclampsia

in Computational Genomics

Yao Chen
Miao Liu
Yonghong Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1228110

2,396 views
3 citations

Original Research

Published on 27 Jul 2023

NeuroCNN_GNB: an ensemble model to predict neuropeptides based on a convolution neural network and Gaussian naive Bayes

in Computational Genomics

Di Liu
Zhengkui Lin
Cangzhi Jia

Frontiers in Genetics

doi 10.3389/fgene.2023.1226905

1,980 views
10 citations

Editorial

Published on 26 Jul 2023

Editorial: Network bioscience Volume II

in Computational Genomics

Marco Antoniotti
Bud Mishra
Marco Pellegrini

Frontiers in Genetics

doi 10.3389/fgene.2023.1256025

1,078 views

Brief Research Report

Published on 26 Jul 2023

Comparative analysis of full-length 16s ribosomal RNA genome sequencing in human fecal samples using primer sets with different degrees of degeneracy

in Computational Genomics

Christian Waechter
Leon Fehse
Marius Welzel
Dominik Heider
Lek Babalija
Juan Cheko
Julian Mueller
Jochen Pöling
Thomas Braun
Sabine Pankuweit

Frontiers in Genetics

doi 10.3389/fgene.2023.1213829

7,005 views
13 citations

Original Research

Published on 26 Jul 2023

NR4A1 as a potential therapeutic target in colon adenocarcinoma: a computational analysis of immune infiltration and drug response

in Computational Genomics

Mei Li
Zhongyi Zhang
Mingzhou Li
Zhe Chen
Weizhu Tang
Xiang Cheng

Frontiers in Genetics

doi 10.3389/fgene.2023.1181320

2,261 views
1 citation

Original Research

Published on 26 Jul 2023

Analysis of lactate metabolism-related genes and their association with immune infiltration in septic shock via bioinformatics method

in Computational Genomics

Huimin Jiang
Yun Ren
Jiale Yu
Sheng Hu
Jihui Zhang

Frontiers in Genetics

doi 10.3389/fgene.2023.1223243

4,264 views
3 citations