Abstract
The expansion of human and non-human primate central nervous system structures has been a paramount question for classic and contemporary studies in comparative vertebrate neuroanatomy. These studies can benefit from framing data analysis within the Prosomeric Model, which defines a common Bauplan for all vertebrate species, including mammals. According to this model, the vertebrate nervous system is composed of several Fundamental Morphological Units (FMUs) that are defined and delineated by characteristic gene expression profiles. Thus, the expansion of neural structures can be traced back to heterochronic neurogenesis, cell lineage specification, and axon growth in their corresponding FMUs. In the present article, we exemplify the use of the Prosomeric Model as the proper theoretical framework for analyzing the expansion of the cerebral and cerebellar cortices, the pontine nuclei, the striatum, the nigrostriatal dopaminergic system, the thalamus, and the amygdala in primates compared to rodents. We describe the quantitative (volume and neuron number) and qualitative (cytoarchitectonic and cell type differences) expansion of these structures in primates versus rodents and define different expansion modes. Then, we relate these modes to the developmental primary events of specification and secondary events of histogenesis, like neurogenesis. We conclude that the systematic analysis of the molecular regulation of primary and secondary developmental events in each FMU in rats, primates, and other mammals could provide the necessary insight to identify the causal mechanisms of the expansion modes described in the present article.
1 Introduction
Since the dawn of modern studies on brain structure, comparative neuroanatomists have devoted large efforts to identify similarities and differences in the size, cytoarchitecture, chemical composition, synaptic connections, and cell types across the central nervous system in different vertebrate species [e. g.,]. The preservation of “older” and the appearance and expansion of “newer” vertebrate nervous system parts have been explored, quantified, and conceptualized in different scaling models [e. g., ; Yopak et al. (2010)]. These comparative studies are a central core of contemporary neuroscience and have implications that go beyond their own scope; for instance, they can provide sound criteria for defining homology of brain regions in different species, which is key for extrapolating experimental data obtained in laboratory animals to the human brain.
Most of the classic comparative studies of the vertebrate central nervous system were performed within the theoretical framework of the Columnar Model of Charles Judson ; ; and Hartwig , a model that has been proved incompatible with the spatiotemporal expression profiles of morphogenetic genes across vertebrate embryos (Puelles and Rubenstein, 2015). On the contrary, molecular developmental data have provided sound foundations for the Prosomeric Model of Luis Puelles and his coworkers. This model defines a vertebrate nervous system Bauplan (or blueprint) composed of several Fundamental Morphological Units (FMUs), each of them defined and delineated by characteristic gene expression profiles (). More important, the topological neighborhood relationships among FMUs are invariant across vertebrates species (Nieuwenhuys and Puelles, 2016). Thus, Bauplan FMUs seem to have been conserved across all vertebrates and allow for advancing sound homology hypotheses: two brain structures in two different species should be homologous if they are originated in the same FMU of the Bauplan defined by the Prosomeric Model (Puelles and Medina, 2002).
Besides homology criteria, the Prosomeric Model has also proved its efficacy for making predictions on brain connectivity based on the causal mechanisms of development (Puelles, 2022) and explaining malformations (). Thus, this model could provide a fruitful theoretical framework for comparative neuroanatomical studies in search of evolutionary principles. In our opinion, defining principles does not consist only in identifying regularities, like those represented in scaling models. A principle in evolutionary biology also requires a causal mechanism for the identified regularity; and causal mechanisms of nervous system evolution must be searched for in the genetic regulation of embryonic development.
In the present article, we compare the expansion of several central nervous system regions in primates compared to rodents in the light of the Prosomeric Model. Our aim is to exemplify the use of this model for defining different expansion modes of neural structures and propose potential causal mechanisms for such modes. First, we summarize the historical development and major concepts of the Columnar and Prosomeric Models to identify the model that can better explain the differential expansion of primate nervous system parts. Then, we compare the quantitative (volume and neuron number) and qualitative (cytoarchitectonic and cell type differences) expansion of the cerebral and cerebellar cortices, the pontine nuclei, the striatum, the dopaminergic nigrostriatal system, the amygdala, and the thalamus in human and non-human primates compared to rodents. Also, we identify the corresponding FMUs of these structures and compare between rodents and primates the data (when available) on neuron number of each structure. Finally, we define five expansion modes of primate nervous system structures and relate them to the primary events of specification and secondary events of histogenesis in the corresponding FMUs to identify their potential developmental and phylogenetic causal mechanisms.
2 Models of neural tube development and evolution
2.1 The Columnar Model of the vertebrate nervous system
Our current understanding of central nervous system development is rooted in the seminal works of the Swiss embryologist Wilhelm His (1831–1904), who, during the second half of the XIXth century, carried on systematic descriptions of the developing nervous system in human and other vertebrate embryos. His obtained complete series of sections through in toto embedded-in-paraffin embryos, stained the sections with Nissl technique, and used them for 3D reconstructions (Richardson and Keuck, 2022). The illustrations and drawing produced by His are still reproduced in contemporary textbooks of embryology and anatomy [e. g., ].
His described in the neural plate and early neural tube several longitudinal zones, called plates (floor, basal, alar, and roof plates), that extended rostro-caudally along the prospective prosencephalon, mesencephalon, rhombencephalon, and spinal cord [; ; Figure 1A]. He could distinguish the alar and basal plates based on differences in neurogenesis time-course (earlier in the basal than in the alar plate). His model was later rejected in favor of an alternative interpretation that assumed that the notochord, and, thus, the basal plate, did not extend to the anterior end of the neural plate and was present only in the spinal cord, the rhombencephalon, and the mesencephalon [; Figure 1B]. Simultaneously, Charles Judson Herrick (1868–1960) described four longitudinal zones, called columns, abutting on the ventricular surface of the diencephalon. These columns were, from dorsal to ventral, the epithalamus (gives rise to the habenula and the pineal gland), the dorsal thalamus (gives rise to all the thalamic nuclei, except the reticular nucleus), the ventral thalamus (gives rise to the thalamic reticular nucleus, the zona incerta, and the Forel fields), and the hypothalamus. The diencephalic columns showed different neurogenesis time-courses (Reinoso Suárez, 1966) and were outlined by three sulci (dorsal, middle, and ventral diencephalic sulci) that could be identified at different developmental stages [; ; Figure 1C]. The four columns in a devoid of basal plate diencephalon were the touchstone of the Columnar Model (Figure 1D) that was further elaborated by and incorporated to most textbooks of embryology and neuroanatomy [e. g., ; ].
Figure 1
It is important to consider that the Columnar Model is an interpretation of the development of the neural tube and its constituents that is based on observations of vertebrate embryos stained for classic neuroanatomical techniques, like Nissl-staining (Figure 1C). These techniques, in combination with serial sectioning and 3D reconstruction, allow for identifying sulci on the pial and ventricular surfaces of the neural tube (like the diencephalic sulci), bulges on the ventricular surface (like the diencephalic columns), and flexures (like the cephalic and pontine flexures) and dilations (like the diencephalic vesicle) along the neural tube (Figure 1D). In the literature of the Columnar Model [e. g.,
2.2 The Prosomeric Model of the vertebrate nervous system
In parallel to the alar and basal plates, classic developmental studies also described transient transverse structures that were called neuromeres. In the rhombencephalon, several rhombomeres were delineated by obvious sulci between them, but in other neural tube regions the neuromeric organization was less obvious. In spite of this, several neuromeric models were proposed along the XXth century based on classic neuroanatomical techniques [e. g., von Kupffer (1906); Rendahl (1924);
A new neuromeric model, the Prosomeric Model, was proposed by Luis Puelles (1948–) and his coworkers based on the analysis of in toto chick embryos stained for acetylcholinesterase. This technique stains all the newborn neurons and revealed transverse patterns of neurogenesis that did not coincide with the diencephalic columns (Puelles et al., 1987a). In the last decade of the XXth century, the use of in situ hybridization to color the expression of morphogenetic genes in vertebrate embryos was instrumental to confirm the neuromeric organization of the vertebrate neural tube (Puelles and Rubenstein, 1993; Rubenstein et al., 1994). These studies also showed that Sonic hedgehog (Shh), the morphogenetic determinant of the basal plate, was expressed in the ventral part of the diencephalon (Figure 2A), supporting the presence of a basal plate component in this vesicle as advanced by
Figure 2

The Prosomeric Model of the vertebrate central nervous system. (A), Expression of Sonic hedgehog (Shh; reddish) and Distal-Less Homeobox 2 (Dlx2; gray) genes colored by in situ hybridization in the diencephalon of a hole mount chick embryo; Shh labels the basal plate. This photography is reproduced from Figure 2B in Martinez-Ferre and Martinez (2012). (B), Scheme of a mammalian neural tube (left lateral view) showing neuromeres (from caudal to rostral: r11-r0, m2-m1, p1-p3, hp1, hp2, ATD), plates (from ventral to dorsal: floor, basal, alar, and roof plates), and the axis (yellow line) of the central nervous system according to Puelles et al. (1987b); Puelles et al. (2008); Puelles and Rubenstein (2015); Nieuwenhuys and Puelles (2016); and Puelles (2018). (C), Magnification of the telencephalic region in B; the pallial (MP, MMP, DP, LP, VP, pallial amygdala; yellow boundaries) and subpallial (St, Pal, Dg, POA; red boundaries) FMUs are represented. (D), Magnification of the prosomere p2 in B; the thalamic FMUs (ET, DTd, DTi, DTv, DTav) are represented in the alar plate. (E), Magnification of the rhombencephalon in B; the rhombic lip is delineated by a short-dashed black line in the alar plate adjacent to the roof plate; tangential migrations that give rise to the cerebellum (pink arrows), the pontine nuclei (purple arrows), and the inferior olive (mustard arrows) are represented. The floor plate is colored in red, the basal plate in pink, the alar plate in light blue, and the roof plate, in dark blue. ATD, acroterminal domain; Dlx2, Distal-Less Homeobox 2 gene; Dg, diagonal subpallial domain; DP, dorsal pallium; DTav, dorsal thalamus, anteroventral subdivision; DTd, dorsal thalamus, dorsal subdivision; DTi, dorsal thalamus, intermediate subdivision; DTv, dorsal thalamus, ventral subdivision; ET, epithalamus; Eth, epithalamus; HM, medial habenula; hp1-2, hypothalamic prosomeres 1-2; Hy, hypothalamus; LP, lateral pallium; m1-2, mesomeres 1-2; M, mesencephalon; MP, medial pallium; MMP, mesomedial pallium; p1-3, prosomeres 1-3; Pal, pallidal subpallial domain; Pall. Amyg., amygdalar pallium; POA, preoptic subpallial domain; PT, pretectum; PTh, prethalamus; r0-11, rhombomeres 0-11; Shh, Sonic hedgehog; St, striatal subpallial domain; Subpall. Amyg., subpallial amygdala; T, telencephalon; Th, thalamus; VP, ventral pallium.
The Prosomeric Model defines the components of the vertebrate central nervous system based on abundant genoarchitectonic data obtained from in situ hybridization experiments performed on vertebrate embryos (Puelles and Ferran, 2012). Genoarchitectonic data has served to identify and delineate several FMUs that constitute the “building bricks” of a common nervous system Bauplan for all vertebrates, including primates. FMUs are patterned during primary events of specification under the induction of several organizers. The notochord and the lateral ectoderm specify the longitudinal floor, basal, alar, and roof plates. The isthmus, the zona limitans intrathalamica (ZLI), and the acroterminal domain (ATD) specify the transverse neuromeres, which are segments of neural tube comprising a representation of the four plates; from caudal to rostral there are twelve rhombomeres (r11-r0; r0 corresponds to the isthmus), two mesomeres (m2-1), and six prosomeres (p1-3, hp1-2, and the ATD). The intersection of longitudinal plates and transverse neuromeres in the neural plate creates a checkboard of histogenetic units, each of them characterized by a specific gene expression profile detected by genoarchitectonic techniques. Further molecular processes within the histogenetic units specify progenitor domains which constitute the FMUs that will give rise to adult brain structures (Figure 2B). The Bauplan formed by the FMUs is conceptualized in the Prosomeric Model [for a review of the Prosomeric Model see Puelles et al. (2013); Nieuwenhuys and Puelles (2016); Nieuwenhuys (2017);
According to the Prosomeric Model, the hypothalamus is a derivative of the floor, basal, and alar plates of hp1, hp2, and the ATD and the telencephalon is a topologically dorsal extension of the alar plate of prosomere hp1, with a small contribution from hp2 (Puelles and Rubenstein, 2015). Four subpallial and six pallial FMUs are specified in the telencephalon. The subpallial FMUs are Striatum (St, gives rise to the striatum), Pallidum (Pal, gives rise to the globus pallidus and the lateral part of the bed nucleus of the stria terminalis), Diagonal (Dg, gives rise to basal prosencephalic structures and the medial part of the bed nucleus of the stria terminalis), and Preoptic (POA, the only part of the telencephalon originated in the alar plate of hp2; gives rise to the preoptic region) (
The thalamus was considered a diencephalic column in the Columnar Model of
In the rhombencephalon, twelve rhombomeres have been identified based on cytoarchitectonic boundaries and gene expression profiles (Nieuwenhuys, 2011). The rhombic lip is a region of the alar plate adjacent to the floor plate that extends from r0 to r10. This region is specialized in producing neurons that will tangentially migrate long distances, like the inferior olive, the pontine nuclei, and the cerebellum. The inferior olive originates from tangential migrations starting at the rhombic lip from r10 to r8 and ending in the basal plate of these same rhombomeres (Tomas-Roca et al., 2016). The pontine nuclei are originated by massive tangential migrations starting at the rhombic lip from r8 to r6; these migrations transverse several rhombomeric boundaries and invade the basal plate of r3 and r4 (Tomas-Roca et al., 2016;
2.3 The Columnar and the Prosomeric Models face to face
The Columnar and the Prosomeric Models propose two different Bauplans for the vertebrate nervous system from two different epistemological and ontological frameworks (Table 1). The Columnar Model is based on the microscopic examination and 3D reconstruction of embryos that are cut and stained with classic techniques, like Nissl staining (Figure 1C). These techniques allow for identifying sulci, bulges, and columns produced by differential growth of some parts of the neural tube over others. Finally, the Columnar Model describes an axis of the neural tube that considers the telencephalon as its most rostral part.
Table 1
| Columnar Model | Prosomeric Model | |
|---|---|---|
| Basic references | Puelles et al. (1987a); Puelles and Rubenstein (1993); Nieuwenhuys and Puelles (2016); Nieuwenhuys (2017) | |
| Anatomical techniques used | Classical stains | Genoarchitecture |
| Definition of boundaries | Sulci | Gene expression boundaries |
| Axis of the central nervous system | Adult nervous system Central axis | Natural axis (alar-basal plate boundary) |
Epistemological differences between the Columnar and the Prosomeric Models.
In contrast, the Prosomeric Model is based on the microscopic examination of embryos that are stained with in situ hybridization and immunohistochemistry to color the expression of morphogenetic genes, like Shh. These techniques allow for identifying boundaries between parts of the embryo that express a given gene and other parts that do not express it; for instance, Shh is expressed in the basal plate, but not in the alar plate (Figure 2A). Finally, the Prosomeric model uses the Natural axis of the neural tube that roughly matches the alar-basal plate boundary and considers that the entire neural tube is epichordal.
The use of different staining techniques provides each model with different ontological power because the classic stains of the Columnar Model and the genoarchitectonic stains of the Prosomeric Model detect different events of development. In embryos, we can define three types of events [Nieuwenhuys and Puelles (2016); Table 2]. First, the primary events of specification are the result of induction processes directed by organizers like the notochord or the isthmus; there are several levels of specification, from the specification of the neural plate by the hypoblast and the primitive node (
Table 2
| Primary events (Specification) | 1st level Specification of the neural plate |
| 2nd level Specification of floor, alar, basal, and roof plates Specification of neuromeres The intersection of plates and neuromeres produces a checkboard of histogenetic units | |
| 3rd level Specification of FMUs in the histogenetic units | |
| 4th level Further lineage specification in the FMUs | |
| Secondary events (Histogenesis) | Neurogenesis |
| Cell migration | |
| Axon navigation and growth | |
| Dendrite growth | |
| Cytoplasmic differentiation | |
| Cell nucleus differentiation | |
| Synapse formation | |
| Synapse pruning | |
| Myelination | |
| Tertiary events (Morphogenesis) | Sulci |
| Flexures | |
| Vesicles | |
| Eminences | |
| Columns | |
| Formation of nuclei and layers |
Types of events during embryological development.
In comparative and evolutionary neuroanatomy, the choice of one Bauplan model over another is not a trivial question. Specifically, the genetic mechanisms that underlie changes in the relative dimension of nervous system parts [“mosaic” evolution;
In summary, the Prosomeric Model provides an ontology of central nervous system parts based on the primary events of specification, which are mediated by the action of gene regulatory networks that direct and coordinate the development of the vertebrate nervous system. Also, the Prosomeric Model Bauplan allows to propose homology hypothesis based on Field homology. Therefore, the FMU-based ontology provides a framework for meaningful interspecies comparison and searching for causal mechanisms of nervous system part expansion in phylogeny.
3 Expanded nervous system structures in humans compared to rats
A first look at the rat and human central nervous systems brings to light quantitative differences. Figure 3 shows several adult rat central nervous system regions around a micrograph of a parasagittal section stained with Nissl. Figure 3A represents a fate map of the early pallium from a rat embryo with the six pallial FMUs, Figure 3B represents the cortical gradient of laminar complexity with its different cortical types (allocortex, mesocortex, eulaminate), Figure 3C represents in grayscale these cortical types on the fate map of the early pallium, and Figure 3D shows higher magnifications of representative cortical regions with different grade of laminar complexity. Other regions, like the dorsal (Figure 3E) and ventral striatum (Figure 3F), the thalamus (Figure 3G), and the cerebellar cortex (Figure 3H), are showed in higher magnification.
Figure 3

The rat central nervous system. Several regions are highlighted around the photograph of a rat central nervous system parasagittal section stained with Nissl. (A), Flat map of pallial FMUs in the mammalian neural plate according to Puelles et al. (2019) and
In contrast, Figure 4 shows schemes of several adult human central nervous system regions on top of and on a parasagittal section drawing [from the Atlas of
Figure 4

The human central nervous system. Several regions are highlighted on top and on a drawing of a human central nervous system parasagittal section stained for myelin [reproduced from Figure 80 in the atlas of
The expansion of the cerebral cortex, the pons, and the cerebellum in the human compared to the rat nervous system stands out at first sight when comparing Figures 3 and 4. In the following sections, we will analyze the quantitative (volume and neuron number) and qualitative (cytoarchitectonic and cell type differences) expansion of the cerebral and cerebellar cortices, the pontine nuclei, the striatum, the dopaminergic nigrostriatal system, the amygdala, and the thalamus in human and non-human primates compared to rodents. We will define several expansion modes and trace them back to the developmental primary events of specification and the secondary events of histogenesis, like neurogenesis and axon growth, in their corresponding prosomeric FMU.
3.1 Tangential expansion of the primate cerebral cortex: “quantitative and qualitative expansion”
The primate cerebral cortex is significantly expanded compared to rodents. This expansion is not merely a quantitative extension of cortical surface by the addition of more cortical columns with comparable laminar composition. On the contrary, new cortical types of higher laminar complexity that are absent in the rat cortex appear in the primate (
We have described previously in detail the cytoarchitecture of cortical types along the gradients of laminar complexity in rat, macaque, and human cerebral cortices (
In summary, the tangential expansion of the human cerebral cortex (Figure 4A) consisted in the addition of cortical types that do not exist in rodents (Figure 3B). These new types are probably specified in concentric rings within the dorsal pallial FMU (Figure 4B) and contain a well develop subventricular zone with abundant intermediate progenitors. The new cortical types in primates have more excitatory neurons in layers II–IV than in layers V–VI and more GABAergic interneurons across all layers from both pallial and subpallial origin. Thus, we describe the expansion mode of the human cerebral cortex as “Quantitative and qualitative expansion”.
3.2 Primate pontine nuclei, cerebellum, and striatum expansion: “general quantitative expansion”
Several circuits involving the cerebellum and pontine nuclei support different aspects of cortical function [
Figure 5

Circuits connecting the cerebral cortex with the pontine nuclei and the cerebellum. Excitatory pathways are colored in green and inhibitory (GABAergic) in red. The corresponding plate, neuromere, and FMU of each circuit station is indicated in blue. Note that all the neurons that form these cortico-pontine, ponto-cerebellar, cerebellar-thalamic, and thalamo-cortical pathways are originated in alar plate FMUs from six different neuromeres. For abbreviations see Figure 2.
Contrary to the cerebral cortex, there is not significant variation in the neuron types that constitute the cerebellum and the pontine nuclei in primates compared to rodents. Actually, the cerebellar cytoarchitecture and cellular composition does not change significantly in primates compared to rodents (
Besides ponto-cerebellar circuits, the basal ganglia also support cortical function. The striatum is the most important input nuclei of the basal ganglia, and its sectors [olfactory tubercule (TOL), nucleus accumbens (NAc), putamen (Put), and caudate (Cd); originated from the St subpallial FMU; reviewed in
Figure 6

Corticostriatal and nigrostriatal territories in primates. (A), Laminar complexity gradient in the primate cerebral cortex. The grayscale represents cortical types according to the grade of laminar complexity (black: simplest cortical type; white: most complex type); Roman numerals indicate cortical layers. (B), Scheme of the striatum showing the distribution of corticostriatal [according to Yeterian and Pandya (1991); Yeterian and Pandya (1993); Yeterian and Pandya (1995); Yeterian and Pandya (1998); reviewed in
Figure 7

Corticostriatal and nigrostriatal territories in rats. (A), Laminar complexity gradient in the rat cerebral cortex. The grayscale represents cortical types according to the grade of laminar complexity (black: simplest cortical type; lightest gray: most complex type); Roman numerals indicate cortical layers. (B), Scheme of the striatum showing the distribution of corticostriatal [according to
3.3 Primate dopaminergic nigrostriatal pathways: “telodendrion expansion”
Besides corticostriatal pathways, the striatum receives dopaminergic projections from the substantia nigra pars compacta (SNc) and the ventral tegmental area (VTA). These projections are key for motor and cognitive functions and are disrupted in neuropsychiatric disorders like Parkinson’s disease [reviewed in
Figure 8

Striatal and nigral expansion in primates compared to rodents. (A), Mouse, rat, macaque, and human unilateral striatal volume. (B), Mouse, rat, macaque, and human unilateral striatal volume in logarithmic scale. (C), Unilateral number of dopaminergic neurons in the mouse, rat, macaque, and human substantia nigra pars compacta (SNc). (D), Striatal volume per dopaminergic SNc neuron in mice, rats, macaques, and humans. (E–H), Micrographs of the mouse, rat, macaque, and human striatum from Nissl-stained sections. (I–L), Micrographs of the mouse, rat, macaque, and human SNc from Nissl-stained sections. Calibration bar in H applies to (E–H) and in L applies to (I–L). Striatal volume data used in this Figure were obtained from
3.4 The primate vs rat amygdala: “focal quantitative expansion”
The amygdala is composed of pallial and subpallial nuclei. Cytoarchitectonic studies in rat, macaque, and human amygdala have identified a comparable set of nuclei, with the only probable exception of the primate paralaminar nucleus, as showed in Figure 9. Some amygdalar nuclei originate in the four subpallial FMUs [
Figure 9

Expansion of pallial amygdalar nuclei in primates. (A), Rat amygdalar nuclei cytoarchitectonic parcellation in coronal section [according to Paxinos and Watson (2007)]. (B), Human amygdalar nuclei cytoarchitectonic parcellation in coronal section [according to
The amygdalar volume in macaques (Figure 9C) and humans (Figure 9B) increases compared to rats (Figure 9A). But this volume expansion is not homogeneous, because the relative size of the subpallial and the cortical pallial nuclei is not preserved. Actually, the Lateral (L), Basolateral (BL), and Basomedial (BM) nuclei are significantly expanded in macaques compared to rats and in humans compared to macaques (Figure 9). The expanded primate amygdalar nuclei are connected to mesocortical and isocortical areas (
3.5 The primate thalamus: “focal quantitative and cell lineage expansion”
The human thalamus (Figure 4D) is larger than the rat thalamus (Figure 3G), but, contrary to the amygdala, there are also qualitative differences in the cytoarchitectonic parcellation of thalamic nuclei across these species. Comparable functional nuclear groups are identified in the rat and human thalamus according to their synaptic connections (Figures 10A–H), but some of them, like the pulvinar complex and the ventral motor nuclei, are expanded and include further subdivisions in humans that are not identified in rats.
Figure 10

Maps of thalamic nuclei drawn from rat and human brain coronal sections. (A–D), Maps of rat [according to Paxinos and Watson (2007)] and (E–H) human thalamic nuclei [according to
The developmental origin of thalamic nuclei has been traced to four FMUs in the alar plate of p2, with the exception of the thalamic reticular nucleus, which is originated in the alar plate of p3 (Figure 2D). This FMUs are the Epithalamus, the Dorsal Thalamus dorsal tier (DTd), the Dorsal Thalamus intermediate tier (DTi), the Dorsal Thalamus ventral tier (DTv), and the Dorsal Thalamus anteroventral tier (DTav) (Redies et al., 2000; Puelles, 2001; Martinez-Ferre and Martinez, 2012;
Regarding neuron composition, there is a significant difference between the rat and human thalamus. It has been known since the studies of Ramón y Cajal (1903; 1966) that the human thalamus is enriched in interneurons, which are scarce in the rodent thalamus. These interneurons, like the thalamic reticular neurons, are GABAergic (
4 Potential causal mechanisms of expansion modes in the primate nervous system
In the previous sections we have defined several expansion modes according to differences in the cytoarchitecture and cell type composition of several expanded nervous system regions in primates compared to rodents. In Table 3 we summarize these expanded structures, their corresponding FMU, and the expansion modes features. In the following sections, we discuss the potential developmental causal mechanisms underlying the expansion modes in relation to the primary and secondary developmental events in the corresponding FMUs.
Table 3
| Structure | FMU | Expansion mode | ||
|---|---|---|---|---|
| Mode | Cytoarchitectonic expansion | Cell type expansion | ||
| Cerebral cortex | Alar plate hp1 (MP, MMP, DP, LP, VP; St, Pall, Dg) | Quantitative and qualitative expansion | New cytoarchitectonic cortical types | More excitatory projection neurons and interneurons for layers II–IV More GABAergic interneurons of pallial and subpallial origin |
| Pontine nuclei | Alar plate r6-8 (Rhombic lip) | General quantitative expansion | Same basic cytoarchitecture | Same basic cell types |
| Cerebellar cortex | Alar plate r1 (Rhombic lip and adjacent matrix) | General quantitative expansion | Same basic cytoarchitecture | Same basic cell types |
| Striatum | Alar plate hp1 (St) | General quantitative expansion | Same basic cytoarchitecture | Same basic cell types |
| Nigrostriatal system | Floor and basal plates p1-3, m1-2 | Telodendrion expansion | Same basic cytoarchitecture | Same basic cell types |
| Amygdala | Alar plate hp1 (Pallial amygdala) | Focal quantitative expansion | Same basic cytoarchitecture with expansion of some pallial nuclei | Same basic cell types |
| Thalamus | Alar plate p2 (DTd) | Focal quantitative and cell lineage expansion | New cytoarchitectonic nuclei and expansion of other nuclei | More GABAergic interneurons |
Expansion modes of human nervous system structures.
For abbreviations see Figure 3.
4.1 Neurogenetic heterochrony across species
The different expansion modes of nervous system structures in human and non-human primates compared to rodents described in the previous sections (Table 3) have been quantified volumetrically in several scaling models [e. g.,
Figure 11

Total neuron number in different regions of mouse, rat, macaque, and human encephalon. (A–C), Three graphics containing the same information but represented in different scales to permit visualization of different orders of magnitude: from tens of billions (A) to tens/hundreds of millions (C). Total number of neurons for “total encephalic neuron number”, “cerebellum”, “cerebral cortex”, and “rest of the encephalon” were obtained from
Figure 12

Neurogenetic heterochrony and molecular patterning of the neural tube. (A), Time-course of neurogenesis across central nervous system regions in human embryos [modified from Figures 10 and 11 in
The study of Kahle suggest that embryonic plates have intrinsic different neurogenetic capacity. All the expanded human nervous system structures analyzed in the present article are alar plate derivatives, except the SNc. Why the logarithmic volumetric increase of the primate striatum along phylogeny has not been paralleled by logarithmic increase in the number of dopaminergic SNc neurons? The answer may be in the developmental constrains of the FMUs that give rise to the SNc, which is a plurisegmental nucleus whose neurons are originated in the paramedian subdomain of the floor plate and in the adjacent medial sector of the basal plate along neuromeres p1-3 and m1-2; later, SNc neurons tangentially migrate to the superficial stratum of the basal plate in the neuromere where they were originated (Puelles and Verney, 1998; Verney et al., 2001;
In summary, some FMUs, like those in the floor and basal plates, have developmental constrains that impede their phylogenetic expansion. In contrast, alar FMUs seem to have higher phylogenetic flexibility and differentially expand across vertebrates (e. g., the optic tectum in birds, the cerebral cortex in mammals, the pontine nuclei in primates). These different developmental constrains would explain “mosaic” expansion of some nervous system parts over others.
4.2 Genetic regulation of primary and secondary developmental events
Some studies have addressed neurogenetic heterochrony in different vertebrate species [e. g.,
The tangential expansion of the primate cerebral cortex shows the most complex expansion mode (“Quantitative and qualitative”) described in the present article. The primate cerebral cortex is larger, has new cytoarchitectonic cortical types, more excitatory neurons, and more GABAergic interneurons compared to the rodent cerebral cortex. This expansion may imply changes in the primary events of specification in the early primate pallium that may specify novel FMUs (compare Figure 3C with Figure 4B) with more intermediate progenitors in the outer subventricular zone, as suggested by
In contrast to the cerebral cortex, other primate alar pate derivatives, like the cerebellar cortex, the pontine nuclei, and the striatum, show “General quantitative expansion” without significant cytoarchitectonic modification or new cell types compared to rodents. Contrary to the cerebral cortex, the expansion modes of these other alar plate derivatives may not involve the specification of novel FMUs and are probably due to variations in the secondary events of histogenesis, like neurogenesis, in the corresponding FMUs. These differences in secondary events should be regulated by the morphogenetic genes that specify the FMUs (Figures 12C, D). For instance, the transcription factor Gbx2 is expressed in prospective cerebellar granule cell neurons (
The primate amygdala shows “Focal quantitative expansion” in some pallial nuclei, without the addition of new cytoarchitectonic nuclei, with the only probable exception of the paralaminar nucleus (Figure 9). The most expanded nuclei are originated in several small FMUs identified in the pallial amygdalar sector; interestingly, these small FMUs also give rise to pallial nuclei that do not significantly expand, like the cortical amygdalar nuclei (
Finally, the primate nigrostriatal system “Telodendrion expansion” may be the only possible mechanism to provide dopaminergic innervation to the expanded primate striatum because of the developmental constrains in the neurogenetic capacity of floor and basal plates, as commented in the previous section. The “Telodendrion expansion” mode in the primate nigrostriatal system could be due to the downregulation of repressive signals that inhibit nigrostriatal axon growth (a secondary event of histogenesis). Actually, it has been shown that the downregulation of Zinc finger E-box-binding homeobox 2 (Zeb2) in the rat developing midbrain neurons increases Bone Morphogenetic Proteins (BMP) signaling, which promotes axon growth. Thus, the Zeb2 knockout mouse has normal SNc dopaminergic neurons numbers, but dopaminergic hyperinnervation of the striatum (
An intriguing question posed by the expansion modes described in the present article is that several alar plate derivatives (cerebral cortex, cerebellum, striatum, pontine nuclei, thalamus) seem to expand in concert along phylogeny. These alar plate derivatives are originated in different neuromeres (Figures 2, 5); some of them are specified by the expression of Otx-2 and others by Hox genes (Figures 12B, D). At what level of gene regulatory networks is the concerted expansion of these alar plate derivatives regulated? Developmental gene regulatory networks are hierarchical (Peter and Davidson, 2015). This means that the generation of spatial gene expression profiles during the early pre- and postgastrular embryos is encoded at the highest level of the networks (1st specification level in Table 2); in a lower level are encoded the spatial gene expression profiles that specify FMUs (2nd and 3rd specification level in Table 2); and, finally, in the lowest level are encoded the gene expression profiles that specify cell types and other secondary events of histogenesis (4th specification level in Table 2). The primate alar plate derivative expansion could be coded in the lower level by coincident independent modifications in the regulation of each alar FMU; alternatively, there could be an intermediate level where regulatory modifications could impact downstream the regulation of secondary events in several alar FMUs.
5 Conclusions
In the present article we have described five different expansion modes of human and non-human primate nervous system parts and traced them back to their corresponding Prosomeric Model FMUs. These modes confirm that neural structures originated in the alar plate can significantly expand in the primate nervous system both quantitatively, by the production of more neurons, and qualitatively, by the expansion of some cell types and, maybe, the specification of novel FMUs. The human cerebral cortex shows a large tangential quantitative (volume and number of neurons) expansion but also a significant qualitative expansion with the appearance of new cytoarchitectonic cortical types; the new types have more neurons in layers II–IV and more GABAergic interneurons originated in pallial and subpallial FMUs. Some alar plate derivatives, like the pontine nuclei, the cerebellar cortex, and the striatum, are “just” quantitatively expanded by the addition of more neurons. Other alar plate derivatives, like the amygdala and the thalamus, show volume expansion in some nuclei and, in the case of the thalamus, the appearance of new nuclei together with an extraordinary expansion of the GABAergic interneuron population. Our analysis also confirms that neural structures originated in the floor and basal plates have severe developmental constrains that do not allow for significant phylogenetic neuron number expansion; thus, the nigrostriatal system is expanded by “Telodendrion expansion” to provide dopaminergic innervation to the enlarged primate striatum. The expansion and branching of telodendrions also probably plays major roles in the diversification and specialization of alar plate neural circuit in primates compared to rodents, as showed for the thalamus (Parent and Parent, 2005).
The expansion modes in primate nervous system structures can be traced back to variations in the primary events of specification (like the specification of novel FMUs) and secondary events of histogenesis (like longer neurogenetic periods, expansion of cell lineages, or axon growth disinhibition) in the corresponding FMUs. Variation in primary events should be encoded in the intermediate level of gene regulatory networks; on the other hand, variation in secondary events should be encoded in the lower levels of gene regulatory networks, although some modifications in intermediate regulatory levels could account for the concerted expansion of primate alar plate derivatives. It must be acknowledged that the speculations advanced in the present article are based on the comparative analysis of primate and rodent adult brains (thus, after the tertiary events of morphogenesis are finalized) and lack experimental confirmation from developmental studies in primate embryos. Such confirmation may be obtained in future studies of the gene regulatory networks of primary and secondary developmental events in each Prosomeric Model FMU in primates and other mammals. These studies could provide the necessary insight to identify the developmental and phylogenetic causal mechanisms of the expansion modes described in the present article.
Statements
Data availability statement
The original contributions presented in the study are included in the article/Supplementary Materials. Further inquiries can be directed to the corresponding author.
Author contributions
MG-C developed the study conception and design. MG-C, SR-C, JZ-D, and IP-S reviewed the literature cited in the text and the figures. SR-C, JZ-D, IP-S, and MG-C assembled the figures. MG-C secured funding. JZ-D contributed to the data curation, formal analysis, visualization, and writing - review and editing. All authors contributed to the article and approved the submitted version.
Funding
This work was supported by a Grant for I+D Projects by the Madrid Government (Comunidad de Madrid-Spain) under the Multiannual Agreement with Universidad Autónoma de Madrid in the line of action encouraging young research doctors, in the context of the V PRICIT (Regional Program of Research and Technological Innovation; grant number SI2/PBG/2020-00014). MAG-C was the recipient of a Beatriz Galindo senior research position in the Faculty of Medicine at Universidad Autónoma de Madrid (BEAGAL18/00098; Spanish Government). JZ-D was the recipient of a Margarita Salas Aid for Requalification at Universidad Autónoma de Madrid (CA1/RSUE/2021-00621; Spanish Ministry of Universities). IP-S was the recipient of a grant from the Chair in Neuroscience UAM-Fundación Tatiana Pérez de Guzmán el Bueno.
Acknowledgments
We thank Dr. Cesar Porrero (Department of Anatomy, Histology and Neuroscience; School of Medicine, Autónoma University of Madrid; Madrid, Spain) for the precious gift of the Nissl-stained mouse brain sections photographed in Figure 8. We also thank Dr. Carmen Cavada (Department of Anatomy, Histology and Neuroscience: School of Medicine, Autónoma University of Madrid; Madrid, Spain) for the precious gift of the Nissl-stained rat, macaque, and human brain sections photographed in Figures 4, 8. The use of human brain tissue was approved by the Ethics Committee for Research of Autónoma University of Madrid (Authorization CEI-104- 2011). We also gratefully acknowledge Dr. Carmen Cavada for giving us access to the microscopes and cameras in her laboratory.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
The author MAG-C declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmamm.2023.1241573/full#supplementary-material
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Summary
Keywords
genoarchitecture, columnar model, field homology, fundamental morphological unit, histogenesis, morphogenesis, cerebral cortex, rhombic lip
Citation
Ruiz-Cabrera S, Pérez-Santos I, Zaldivar-Diez J and García-Cabezas MÁ (2023) Expansion modes of primate nervous system structures in the light of the Prosomeric Model. Front. Mamm. Sci. 2:1241573. doi: 10.3389/fmamm.2023.1241573
Received
16 June 2023
Accepted
03 October 2023
Published
08 November 2023
Volume
2 - 2023
Edited by
Ruth Benavides-Piccione, Spanish National Research Council (CSIC), Spain
Reviewed by
Muhammad A. Spocter, Des Moines University Osteopathic Medical Center, United States; David M. Feliciano, Clemson University, United States
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© 2023 Ruiz-Cabrera, Pérez-Santos, Zaldivar-Diez and García-Cabezas.
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*Correspondence: Miguel Ángel García-Cabezas, garcia.cabezas@uam.es
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