Abstract
The Arctic is undergoing rapid environmental transformation, with intensified glacial and permafrost melt fundamentally altering freshwater discharge regimes and biogeochemical fluxes to coastal fjord systems. Here, we investigate how seasonal meltwater dynamics shape protistan plankton communities along a terrestrial – marine gradient in Isfjorden (Svalbard) during the exceptionally warm year of 2018. Sampling across three distinct melt season stages – pre-freshet (May), spring freshet (June), and late summer runoff (August) – revealed pronounced temporal and spatial shifts in community structure, strongly linked to evolving environmental gradients. In May, cold, clear, unstratified waters and marine nutrient inputs supported a typical late spring bloom, led by Phaeocystis pouchetii, which significantly contributed to the particulate organic carbon pool, and was followed by diatoms of the genera Chaetoceros and Thalassiosira. The June freshet triggered sharp stratification and nutrient enrichment from glacial and terrestrial sources, driving an unprecedented proliferation of small flagellates, notably Chrysochromulina and two morphologically distinct, yet unidentified taxa. However, by August, escalating turbidity from intensified meltwater inputs and sediment resuspension severely constrained photic conditions, suppressing protistan biomass despite sustained nutrient availability. Across the season, community dynamics were governed by complex interactions between nutrient supply, light limitation, and physical forcings such as stratification and advection. Our findings suggest that ongoing Arctic warming may increasingly favor opportunistic, small flagellates over traditional diatom-dominated blooms, with major implications for carbon cycling and food web dynamics in Arctic fjords.
1 Introduction
The Arctic is experiencing amplified warming compared to the global average (). This unprecedented rise in temperature is reshaping regional physical and biogeochemical systems through increased precipitation variability (; ), declining terrestrial snow cover (), and accelerated glacier melt and permafrost thaw (). These changes are significantly enhancing freshwater discharge into Arctic coastal systems, particularly during summer months ().
Fjord systems are primary conduits for meltwater entering the Arctic Ocean and represent key transition zones between terrestrial and marine environments. Through complex cross-fjord circulation, exchange, and mixing processes, fjords act as dynamic biogeochemical interfaces and ecological hotspots (; ). These environments serve as important zones of carbon sequestration and provide critical habitat and food resources for both pelagic and benthic communities (). As dynamic land-sea interfaces, fjord and estuarine reservoirs can also support high biological productivity. Understanding fjord-scale processes is therefore essential to assessing how climate-driven meltwater inputs affect Arctic hydrography and biological communities (; ).
Svalbard, a key location for Arctic climate research, has shown clear evidence of regional warming and reduced sea ice cover. The processes occurring in this archipelago are considered early indicators of broader change in the European Arctic (). Projections suggest substantial glacier mass loss by the end of the 21st century, with reductions ranging from 20–50% under Representative Concentration Pathway (RCP) 2.6 and from 40–85% under RCP 8.5, accompanied by areal losses of 10–50% and 30–80%, respectively ().
Isfjorden, the largest fjord system on the west coast of Spitsbergen, exemplifies the impacts of ocean-climate interactions. Its hydrographic complexity – driven by the interplay of Atlantic and Arctic water masses – creates a mosaic of habitats, from turbid, stratified, freshwater-influenced inner fjords to clearer, saline, nutrient-rich outer regions, across relatively small spatial scales. These gradients provide a unique natural laboratory for investigating marine ecosystem responses to both oceanic forcing, such as Atlantic inflow and temperature variability, and terrestrial forcing, including glacial melt, runoff, and sediment delivery. Unlike many Arctic fjords, Isfjorden lacks a shallow sill at its entrance, allowing direct exchange with the adjacent shelf and slope. Warm Atlantic Water (AW) from the West Spitsbergen Current (WSC) and colder Arctic Water (ArW) from the Spitsbergen Polar Current enter the fjord, undergo modification during transit, and exit via a broad northern outflow (). In addition to oceanic influence, Isfjorden is heavily affected by terrestrial processes including glacier melt, coastal erosion, and permafrost thaw (). Up to 90% of total freshwater runoff occurs between June and August, with peak discharge in July (). Snowmelt typically begins in mid-May to early June, coinciding with air temperatures rising above 0 °C. The melt season is characterized by a bimodal discharge pattern: early–season runoff driven by snow and ice melt, followed later by enhanced flow from active layer thaw and rainfall-induced floods (). These hydrological processes, modulated by meteorological variability, influence freshwater and sediment fluxes to the fjord, altering water column stratification, light availability, nutrient delivery, and biological productivity.
Within planktonic communities, protists are highly responsive indicators of environmental change due to their short generation times, high turnover rates, and close coupling to light-dependent surface waters (). At the same time, they play central roles in Arctic food webs – as primary producers and mediators of energy and carbon transfer. In Svalbard fjord systems, observed trends toward fresher, more turbid surface waters have been linked to alterations in biogeochemical processes and ecosystem dynamics (). Protistan communities, in particular, show increasing dominance of small, motile flagellates (e.g., ; , ), which are well adapted to stratified and turbid environments through efficient nutrient uptake, phagotrophy, and the ability to exploit particle-rich microhabitats. Climate-driven increases in meltwater input may reinforce this compositional shift, fundamentally restructuring pelagic-benthic trophic linkages and polar ecosystem functioning (). Despite extensive research in the Svalbard region (e.g., Isfjorden-Adventfjorden: ; ; Kongsfjorden: ), key knowledge gaps remain, particularly regarding the seasonal dynamics and ecological roles of understudied flagellate taxa. These groups are often underrepresented in ecological assessments due to their small size and historically lower perceived importance compared to diatoms and dinoflagellates. Understanding how these transitions unfold across seasonal and spatial gradients requires multi-year datasets that capture natural variability, including contributions from focused seasonal studies like the present one – especially during critical, yet logistically challenging, periods such as spring and early summer.
This study aims to clarify how protist communities (here and throughout referring specifically to nano- and microplankton) respond to seasonal, meltwater-driven gradients in freshening, turbidity, and light availability-factors expected to intensify under future climate scenarios. We investigated protistan plankton communities in Isfjorden during three key stages of the 2018 melt season: pre-freshet (May), spring freshet (June), and late summer runoff (August) – a year marked by anomalously warm temperatures and reduced sea ice extent (). Specifically, we examined:
The spatial and temporal variations in protistan community structure along a land-sea gradient from inner to outer fjord regions;
The relationships between protistan community patterns and environmental conditions, with a focus on potential responses to projected increases in freshwater runoff.
2 Materials and methods
2.1 Fieldwork
Sampling was conducted in May (10–11), June (18–24), and August (16–24) 2018 at 17 stations across Isfjorden, spanning a gradient from coastal waters to the outer fjord (Figure 1). Sampling was primarily conducted using a small boats, with additional collections carried out aboard R/V Helmer Hanssen and R/V Clione (for details, see ). The study area included several side fjords of Isfjorden, each characterized by distinct freshwater regimes during the melt season. Adventfjorden, in the southwest, is primarily influenced by riverine discharge from Adventelva and Longyearelva, along with urban runoff. Billefjorden, in the northeast, is more enclosed (sill depth ~50 m) and receives seasonal meltwater from Nordenskiöldbreen and Ebbaelva, leading to persistent stratification and high turbidity. Tempelfjorden, in the southeast, is fed mainly by Tunabreen – a surging tidewater glacier that episodically releases large volumes of meltwater – and the land-terminating Von Postbreen, together with substantial input from the river Sassenelva. Smaller seasonal streams, including DeGeerelva and Gipsdalselva, provide additional freshwater locally, particularly during peak melt. These differences in freshwater input shape local gradients in salinity, turbidity, and light availability, and were considered in the spatial context of sampling and habitat classification. Due to ice cover in May (Figure 2), the number of accessible stations varied. Additional transect stations (B-Ice, T-Ice) were sampled along the land-fast ice edge in the fjord arms, while the innermost stations remained inaccessible.
Figure 1
Figure 2

Satellite images of Adventfjorden, Billefjorden, and Tempelfjorden, derived from Sentinel Hub by Sinergise (https://dataspace.copernicus.eu/), showing the sampling locations, sea-ice coverage, and surface riverine and glacial runoff during each sampling period. Stations in the main basin (MB: IsG, IsK, ME-3), located outside the image frames, were visited in each month. Cloud-free images were selected as close as possible to the sampling dates, which are indicated in the captions as follows: satellite image from May 14 corresponding to the May 10–11 sampling; June 22 for the June 18–24 sampling; and August 6 for the August 16–24 sampling, except for Billefjorden in May, where the image corresponds to May 18 – the nearest date with minimal cloud cover over the fjord.
Water clarity was assessed using a Secchi disk (20–30 cm diameter), lowered on a marked line until it disappeared from view. The Secchi depth (SD [m]) was used as a proxy for euphotic zone depth, assuming the euphotic layer extends to approximately twice the Secchi depth (EZ ≈ 2 × SD;
Water samples were collected using a 10 L Niskin bottle (KC Denmark, Silkeborg) at just below the surface and at 15 m depth. These depths were selected based on prior observations from Isfjorden, indicating that peak plankton concentrations often occur within the upper 15 m (
For protistan analysis, 200 mL subsamples were preserved in dark bottles with a mixture of acidic Lugol’s solution and glutaraldehyde (1–2% final concentration), following recommendations for the preservation of fixation-sensitive taxa, including soft-bodied flagellates (
2.2 Laboratory analyses
2.2.1 Water chemistry
Water chemistry parameters (SPM, POC, both expressed in g m-³; nutrients in mmol m-³) were analyzed following protocols previously described in
2.2.2 Protist identification and enumeration
Qualitative and quantitative analyses of planktonic protists were performed at the Marine Ecology Department of the Institute of Oceanology, Polish Academy of Sciences (IO PAN), following established protocols (
2.3 Data analysis
2.3.1 Habitat classification
To minimize the influence of highly localized conditions and to better capture the dominant environmental gradients across Isfjorden, sampling stations were grouped into four habitat categories (Figure 1). These were defined as follows: river estuary (RE), located near river mouths; inner fjord (IF), situated in the innermost parts of the sub-fjords, either adjacent to glaciers or close to the shoreline; outer fjord (OF), positioned at the mouths of the sub-fjords and farther offshore than the inner stations; and the main basin (MB), representing the marine endpoints of the fjord system, with minimal terrestrial influence. This habitat classification was consistent with that used in the complementary zooplankton study by
2.3.2 Water mass composition and freshening
Water masses were classified using Ocean Data View (version 5.6.2), following definitions previously identified for Isfjorden (
2.3.3 Protist abundance and biomass
Subsamples were grouped by month and habitat to investigate temporal and spatial dynamics in protistan communities across the melt season and associated environmental gradients. This approach follows the methodology applied by
Analyses focused on overall protist abundance, with particular attention given to main groups – defined as those contributing at least 5% to total abundance – and to dominant taxa within those groups, as in the year-round Isfjorden study by
2.3.4 Statistical analyses
Associations between environmental variables and protistan community metrics were evaluated using Spearman’s rank-order correlation, performed in R version 4.4.0 (
Additional statistical analyses were conducted in PRIMER 7 (PRIMER-E, Plymouth, UK) with the PERMANOVA+ add-on (
Community richness, diversity, and evenness were estimated using Hill’s numbers: N0, N1, and N2 (
To test for differences in community composition among months and habitats, and their interaction, permutational analysis of variance (PERMANOVA) with Monte Carlo sampling was applied. Pairwise post hoc comparisons were conducted using Monte Carlo sampling as well. Community structure variability was further explored using principal coordinates analysis (PCO) based on log-transformed abundance data and Bray-Curtis dissimilarities.
To identify the environmental variables most strongly influencing protistan community structure throughout the melt season, distance-based linear models (DistLM) were constructed and visualized with distance-based redundancy analysis (dbRDA), both based on Bray-Curtis distances. Marginal tests were initially performed to evaluate the effect of each explanatory variable individually. Subsequently, a stepwise forward selection procedure, based on the adjusted R² criterion (
Seasonal associations of protist taxa were illustrated using a heatmap, showing the contributions of taxa (representing >0.01% of total abundance) to overall community composition (cells m-3). Community groupings were further examined using Similarity Profile (SIMPROF) tests and hierarchical clustering of taxa based on Bray-Curtis dissimilarity.
All boxplots were generated in OriginPro 2021 (version 9.8.0.200, OriginLab Corporation, Northampton, MA, USA) and finalized in CorelDRAW 2018 (Corel Corporation, Ottawa, ON, Canada).
3 Results
3.1 Environmental conditions
Broad hydrographic and biogeochemical patterns during the 2018 melt season have been described in detail by
Sampling took place in May while land-fast ice still covered the inner parts of Isfjorden (Figure 2). Lower salinity at RE and IF stations was likely influenced by sea ice melt (Figure 3). River discharge, particularly from Adventelva, was already underway and significantly affected optical properties in Adventfjorden. Elevated turbidity was observed near river mouths and ice edges. POC and nutrient levels generally increased toward the MB area, except for NH4+, which peaked at RE stations. SPM varied across sites, with the highest values recorded at RE and OF. Hydrographic conditions indicated the presence of LW and ArW water masses (Figure 4).
Figure 3

Environmental conditions observed during the study period. The Secchi depth scale [m] is inverted to reflect the vertical distribution of the euphotic zone, with lower values indicating shallower light penetration. In this and subsequent figures, boxplot center lines represent medians, box edges correspond to the 25th and 75th percentiles, whiskers indicate the 5th and 95th percentiles, and circles denote outliers.
Figure 4

Temperature–salinity (TS) diagrams derived from monthly CTD profiles, presented by habitat (upper panels) and by depth (lower panels). Water masses were classified according to categories specific to Isfjorden, as defined by
As the melt season progressed into June, hydrographic conditions shifted markedly (Figure 3). The warmest and freshest surface waters, with salinity as low as 26.47, were observed in the RE area, reflecting intensified freshwater input during the spring freshet. This led to stronger stratification, as indicated by increased salinity gradients (dS) and FWC of the upper water column, particularly in RE and IF. IW separated SW from underlying TAW in deeper layers of OF and MB (Figure 4). Increased freshwater runoff also raised turbidity in RE and IF, which, as indicated by reduced SD, resulted in a shallower euphotic zone. Nutrient levels peaked where freshwater influence was strongest, although high PO43- concentrations were also noted in the OF area near Billefjorden, diverging from this overall pattern.
In August, a 2–3 °C rise in air and water temperatures intensified glacial melt and coastal runoff, delivering high loads of SPM and POC to nearshore areas (Figure 3). This formed turbid freshwater plumes that reduced water clarity, as indicated by lower SD, with their influence decreasing offshore. As a result, a clear salinity and turbidity gradient developed along Isfjorden – from fresh, DIN- and SiO2-rich inner waters in RE and IF to more saline, clearer conditions in OF and MB. At the same time, advected AW occupied the deeper layers of MB (Figure 4).
3.2 Protist communities
3.2.1 Taxonomic composition
A total of 107 taxa were identified at the species (s) level and 64 at the genus (g) level, spanning 18 classes. The identified taxa included: Bacillariophyceae (31 s, 22 g); Chlorophyceae (1 g); Choanoflagellatea (2 s); Chrysophyceae (2 s, 1 g); Ciliophora: Gymnostomatea (1 g), Hypotrichea (1 g), Litostomatea (1 s), Oligotrichea (16 s, 7 g), Prostomatea (1 s); Cryptophyceae (2 s, 2 g), Cryptophyta incertae sedis (1 s); Dictyochophyceae (3 s); Dinophyceae (40 s, 25 g); Euglenoidea (1 g); Imbricatea (1 s); Prasinophyceae (3 s, 2 g); Prymnesiophyceae (3 s, 1 g); Telonemea (1 s). Due to the absence of distinct morphological features, several individuals were identified only to higher taxonomic levels. These included: Bacillariophyceae (Pennales indet. 5-140 µm); Ciliophora indet. 20-160 µm and Oligohymenophorea indet.; Cryptophyceae indet.; Dinophyceae (Gymnodiniales 20-60 µm, Peridiniales 5-60 µm); Euglenoidea indet. Additionally, non-identified mono- and biflagellates (3–13 µm), classified as Eukaryota incertae sedis, were present in the samples. Two morphologically distinct yet taxonomically unresolved taxa were also recorded, categorized as “Indeterminate 1” and “Indeterminate 2.” These are illustrated in Figure 5.
Figure 5

Illustrations of two unidentified protists commonly observed across the European Arctic: “Indeterminate 1” (1a–g) and “Indeterminate 2” (2a–k). Images were acquired using Z-stack imaging (Nikon) at 400× and 600× magnifications. Scale bars are shown only in schematic drawings. Black arrows indicate flagella, which are barely visible under light microscopy; their absence in some cells may result from subapical insertion or loss during fixation. Orange arrows mark structures resembling ejectosomes, known from some heterotrophic protists; they are also shown schematically in the drawing, though their number and arrangement may vary between cells. “Indeterminate 2” (a–i) was imaged in 2019; (j–k) in 2025 during follow-up analyses. Differences between the image sets suggest that “Indeterminate 2” is prone to morphological alteration during long-term storage, a pattern not observed in “Indeterminate 1”.
Alpha diversity exhibited clear seasonal and spatial variability (Supplementary Figure 1). Species richness (N0) peaked in May, particularly at the outer stations (MB, OF), while nearshore river-influenced sites (RE) consistently displayed the lowest N0 values across all months, with a general increasing trend toward the main basin. Diversity indices N1 (expected number of equally common taxa) and N2 (expected number of equally abundant taxa) showed broadly similar patterns, both reaching notably higher values in June when comparing habitats across months. Across all months, N1 and N2 values generally increased along the gradient from the innermost fjord regions toward the open waters. An exception to this trend was observed in the IF stations during May and June, where both the median and variability of the diversity indices were substantially higher than in adjacent habitats. In May, the N2/N1 ratio – an indicator of community evenness – suggested greater equitability in less terrestrially influenced locations (MB, OF). By contrast, in June and August, the N2/N1 ratio revealed the highest evenness in nearshore habitats, particularly within the inner fjords (IF), with increasing dominance (lower evenness) observed toward the outer fjord areas (OF, MB).
3.2.2 Quantitative composition
Protistan abundance and size structure exhibited substantial spatial and temporal variability throughout the study period (Figure 6). Seasonal patterns in total abundance closely mirrored biomass trends, which, in turn, corresponded well with variations in chlorophyll a concentrations – a proxy for primary producer biomass. Notably, these patterns differed markedly between the inner fjord areas (RE, IF) and the outer regions (OF, MB).
Figure 6

(a) Comparison of total protist community abundance (cells m-3), total chlorophyll a concentration (mg m-3), and total biomass excluding ciliates (mg m-3); (b) Protist abundance (cells m-3) by size fraction: small nanoplankton (≤10 µm), large nanoplankton (10–20 µm), and microplankton (≥20 µm), presented by habitat and month. To improve resolution given the wide range of abundance and biomass values, data were logarithmically transformed (n = log10(data)), with y-axis values inversely transformed (10n). The same transformation approach was applied in Figure 7.
A limited number of protist groups, hereafter referred to as the main groups, accounted for the majority of the community composition, each contributing at least 5% to the total abundance (Figure 7). These dominant groups included Bacillariophyceae, Cryptophyceae, Dinophyceae, Eukaryota incertae sedis (non-identified mono- and biflagellates, predominantly 3–7 µm in size), “Indeterminate 1”, “Indeterminate 2”, and Prymnesiophyceae. Collectively, these groups represented over 97% of total protist abundance.
Figure 7

Abundance of main protist groups (≥5% of total abundance) in each month–habitat category. The remaining groups contributed a combined 2.77%.
Subsequent analyses based on these main groups revealed significant temporal and spatial variation in community composition. PERMANOVA confirmed significant differences between months (Pseudo-F = 24.975, p(perm) = 0.001), as well as significant interactions between month and habitat (Pseudo-F = 2.3994, p(perm) = 0.007), indicating considerable intra-seasonal and spatial heterogeneity in protistan communities.
In May, overall protist abundance was high, typical of the spring bloom period (Figure 6a), with a maximum of 17.84 × 108 cells m-3 recorded in surface waters at station IsG. This peak was primarily driven by massive colonies of the prymnesiophyte Phaeocystis pouchetii (≤10 µm), likely in its vegetative (mixotrophic) stage, which accounted for approximately 51% of total abundance across the study area (Figures 7, 8). Microplanktonic Bacillariophyceae, mainly Chaetoceros furcillatus and Thalassiosira nordenskioeldii, contributed around 36%, while mono- and biflagellates (approximately 4.7% of total abundance), potentially including flagellated forms of P. pouchetii, dominated in outer waters (OF, MB).
Figure 8

Heatmap of the main protist groups, showing key contributors with relative abundances ≥0.01% across all samples. Community groupings were identified using Similarity Profile (SIMPROF) analysis and hierarchical clustering (nearest neighbor method) based on Bray-Curtis dissimilarities among taxa. To preserve the spatial gradient from inner Isfjorden habitats to the marine endpoint, samples (habitats) were displayed without clustering.
Spatially, the community structure exhibited a clear dichotomy: higher abundances were observed in the outer fjord (MB: 53.2%, OF: 30.2%), while inner habitats (RE: 10.8%, IF: 5.8%) supported lower proportions of total abundance, a pattern also reflected in community composition differences (Table 1). In inner habitats, flagellates – particularly nano- and microplanktonic dinoflagellates of the order Gymnodiniales (Gymnodinium and Gyrodinium) – were the dominant contributors.
Table 1
| Habitats | May | June | August | ||||||
|---|---|---|---|---|---|---|---|---|---|
| t | p (perm) | p (MC) | t | p (perm) | p (MC) | t | p (perm) | p (MC) | |
| RE, IF | 1.8134 | 0.049 | 0.058 | 0.74649 | 0.508 | 0.502 | 1.8685 | 0.015 | 0.037 |
| RE, FO | 1.6364 | 0.09 | 0.128 | 1.5868 | 0.064 | 0.131 | 1.9017 | 0.075 | 0.063 |
| RE, MB | 2.399 | 0.006 | 0.013 | 1.7419 | 0.058 | 0.098 | 3.9074 | 0.003 | 0.001 |
| IF, OF | 2.0077 | 0.025 | 0.044 | 1.1625 | 0.289 | 0.244 | 0.85918 | 0.565 | 0.482 |
| IF, MB | 2.3468 | 0.013 | 0.017 | 1.1214 | 0.315 | 0.296 | 1.0944 | 0.371 | 0.337 |
| OF, MB | 0.67303 | 0.677 | 0.619 | 1.493 | 0.149 | 0.148 | 1.4666 | 0.125 | 0.132 |
Results of PERMANOVA pairwise tests with corresponding Monte Carlo tests, assessing the effects of habitat and month on log-transformed protistan community composition in Isfjorden.
Statistically significant results based on Monte Carlo tests (p(MC)) are indicated in bold.
Biomass distribution diverged from abundance patterns. The highest biomass was recorded in MB, with a median of 91.66 mg C m-3, compared to lower values across other habitats (median 24.44 mg C m-3). This was accompanied by elevated chlorophyll a concentrations in MB (median 3.85 mg m-3) relative to other areas (0.30–0.65 mg m-3). Dinophyceae accounted for the largest share of total biomass (49.9%, mainly in IF and RE), followed by Bacillariophyceae (30.8%, primarily in MB), and Prymnesiophyceae (18.0%, mostly in MB and OF).
By June, the community had shifted toward a dominance of nanoplanktonic flagellates spanning the full class size range (3–20 µm; Figure 6b). Numerically, the community was dominated by Chrysochromulina (Prymnesiophyceae), along with two unidentified taxa (“Indeterminate 1” and “Indeterminate 2”; Figures 7, 8). Chrysochromulina and “Indeterminate 1” were widespread, with Chrysochromulina peak abundances at stations B-Outer (OF: 59.07 × 108 cells m-3) and B-RE (RE: 57.61 × 108 cells m-3), and with “Indeterminate 1” peak abundance at B-Outer (23.81 × 108 cells m-3).
In contrast, “Indeterminate 2” was limited to the stations in Adventfjorden, with the highest abundance in RE (station A-F1, 7.79 × 108 cells m-3), slightly lower densities in IF at 15 m depth (4.94–6.79 × 108 cells m-3), and a secondary peak in OF (IsA: 10.49 × 108 cells m-3). Overall, community abundance in June was exceptionally high for the post-spring-bloom period and showed minimal spatial differences (Table 1). Compared to May, total protist abundance increased markedly across most habitats. Respective totals (× 108 cells m-3) for May and June were: RE (13.21; 98.58), IF (7.07; 65.22), OF (36.80; 135.93), and MB (64.99; 55.57). Biomass during this transitional period also remained high, surpassing spring values in the OF area (median June: 80.91 mg C m-3vs. May: 27.51 mg C m-3). Biomass variability increased, particularly in inner habitats (RE, IF). Besides the dominant flagellates, unidentified biflagellates, Cryptophyceae, and Gymnodiniales (Dinophyceae) contributed substantially to the communities across Isfjorden.
By August, protistan communities were substantially depleted in both abundance and biomass, representing a taxonomic legacy of the early-summer assemblage (Figure 6a). The community, dominated by large nanoplankton (10–20 µm; Figure 6b), varied significantly along the side fjords (RE vs. IF) and between extreme habitats (RE vs. MB; Table 1). The lowest protist abundances were recorded in the RE area, increasing gradually along the fjord axis toward the MB region. Station IsG, located at the outermost part of Isfjorden, recorded the highest protist abundance (5.89 × 108 cells m-3) and biomass (26.48 mg C m-3).
In addition to previously observed flagellates (Cryptophyceae and naked dinoflagellates), the community included thecate Dinophyceae, such as autotrophic Prorocentrum cordatum, Azadinium spinosum, Gonyaulax gracilis, and the heterotrophic Protoperidinium bipes (Figure 8). Bacillariophyceae were largely restricted to the MB area and occurred at low abundances (maximum 0.18 × 108 cells m-3 at IsG). The assemblage was composed primarily of Thalassiosira spp. (20–30 µm), Lennoxia faveolata, Chaetoceros furcillatus, Thalassiosira nordenskioeldii, Licmophora gracilis, and unidentified pennate diatoms (20–30 µm).
3.3 Environmental drivers
Spearman rank correlation analysis indicated that water column stratification (dS) was significantly negatively correlated with the majority of the main protist groups, including Bacillariophyceae, “Indeterminate 1”, Prymnesiophyceae, Dinophyceae, and Eukaryota incertae sedis (mono- or biflagellates) (Supplementary Figure 2). Additionally, Bacillariophyceae showed negative correlations with both temperature and turbidity, while Dinophyceae were negatively correlated with turbidity alone. “Indeterminate 1” displayed a significant negative correlation with NH4+ concentrations and a weaker inverse relationship with NO2- + NO3-. In contrast, positive correlations were observed between “Indeterminate 2” and SPM, as well as between Cryptophyceae and chlorophyll a.
Both PCO and dbRDA analyses indicated pronounced temporal variability in protist community composition, reflecting seasonal shifts in community structure (Figure 9). The first two axes of the dbRDA ordination explained 93.4% of the fitted variation and 33.7% of the total variation. Marginal tests within the DistLM framework identified temperature, stratification (dS, 0–10 m), NO2- + NO3-, SPM, and POC as significant environmental drivers of community structure (Table 2).
Figure 9

Protist community patterns visualized by (a) principal coordinates analysis (PCO) based on Bray-Curtis dissimilarities of log-transformed community data, and (b) distance-based redundancy analysis (dbRDA) illustrating relationships between protist communities and selected environmental variables. Factors shown in bold were statistically significant according to the DistLM model (Table 2). The legend applies to both panels.
Table 2
| Variable | Marginal tests | Sequential tests | |||||
|---|---|---|---|---|---|---|---|
| Pseudo-F | p | Adj. R2 | SS (trace) | Pseudo-F | p | Cumul. | |
| Temperature | 13.415 | 0.001 | 0.12744 | 12304 | 13.415 | 0.001 | 0.13771 |
| Turbidity | 9.536 | 0.001 | 0.23729 | 10501 | 13.098 | 0.001 | 0.25523 |
| POC | 9.4157 | 0.001 | 0.25699 | 2499.8 | 3.2006 | 0.033 | 0.28321 |
| dS (0–10 m) | 4.4738 | 0.018 | 0.27304 | 2148.1 | 2.811 | 0.053 | 0.30725 |
| SPM | 3.8869 | 0.018 | 0.28285 | 1588.6 | 2.1073 | 0.12 | 0.32503 |
| PO43- | 1.2708 | 0.264 | 0.28993 | 1342 | 1.7979 | 0.153 | 0.34005 |
| Chlorophyll a | 2.3144 | 0.07 | 0.29253 | 960.08 | 1.291 | 0.273 | 0.3508 |
| Salinity | 1.22 | 0.297 | 0.29405 | 866.66 | 1.1679 | 0.327 | 0.3605 |
| NH4+ | 1.2289 | 0.311 | |||||
| NO2- + NO3- | 6.1342 | 0.004 | |||||
Environmental drivers of protistan community structure across all months, as identified by DistLM marginal and sequential tests.
Variables in bold were statistically significant in the sequential selection model (p-value). NO2- + NO3- and NH4+ were excluded during sequential model selection, as they did not improve the model’s explanatory power (cumulative adjusted R²).
However, when variables were combined in the sequential selection model, only gradients of temperature (strongly positively correlated with FWC in the upper 10 m and with SiO2), turbidity (strongly negatively correlated with SD), and POC remained significant, collectively explaining 26% of the variation in community composition. Of these, temperature emerged as the most influential factor, accounting for approximately 13% of the total variance when considered individually (Table 2).
Seasonally, the May community structure was associated with higher POC concentrations and lower temperatures, whereas the August community displayed the opposite pattern. In contrast, the June community was primarily influenced by turbidity levels (Figure 9b).
4 Discussion
Our findings reveal a clear seasonal and spatial trajectory in Isfjorden’s protistan plankton communities, shaped by meltwater-driven changes in hydrography, nutrient availability, and light conditions (Figure 10). In May, cold, clear, unstratified waters enriched with marine-derived nutrients supported a robust spring bloom dominated by diatoms and Phaeocystis pouchetii, which contributed substantially to primary production and the POC pool. By June, the onset of the spring freshet introduced strong stratification and nutrient-rich runoff from glacial and terrestrial sources, shifting community structure toward small, opportunistic flagellates – notably Chrysochromulina and unidentified taxa such as “Indeterminate 1” and “Indeterminate 2” – thriving under freshened, nutrient-enriched, but increasingly turbid conditions. In August, elevated temperatures, intensified stratification, and turbidity from glacial melt and sediment resuspension severely limited light penetration. Despite sustained nutrient availability and high SPM and POC concentrations, protist abundance remained low, suggesting that late-summer carbon pools were driven more by terrestrial input and resuspension than by in situ production. Throughout the melt season, protist community dynamics reflected a shifting balance between nutrient supply and light limitation, shaped by physical processes such as stratification and oceanic advection. Spatial differences across fjord regions (RE, IF vs. OF, MB) mirrored the variable expression of these gradients. Importantly, our results suggest that continued freshening and darkening of Arctic coastal waters may favor small, motile, mixotrophic nanoflagellates adapted to low-light conditions, while disadvantaging larger, obligately phototrophic diatoms. This emerging functional divergence highlights potential “winners” and “losers” under future climate scenarios, with cascading implications for primary production, trophic transfer, and carbon export in Arctic fjord ecosystems.
Figure 10

Summary of the principal findings of this study. In May, sea ice still covered the inner arms of Isfjorden, while the late spring bloom was dominated by Phaeocystis, accompanied by dinoflagellates in the inner fjord and diatoms in the outer regions. This bloom was sustained by nutrient inputs from the open ocean and the entrainment of NH4+ from shallow benthic sources. The onset of the spring freshet in June delivered substantial terrestrial inputs, markedly altering nutrient availability and reducing light penetration in the highly stratified, turbid surface waters. These conditions favored the early summer proliferation of diverse nanoflagellates, which outnumbered the spring assemblages. By August, surface waters exhibited elevated SPM and FWC, intensifying turbidity and maintaining strong stratification. Despite continued nutrient inflows from terrestrial sources, protistan communities were depauperate, comprising primarily cryptophytes and dinoflagellates, with diatoms intermittently introduced into the main basin via advection.
The following sections examine these seasonal and spatial patterns in greater detail, with particular focus on the dominant protistan groups characterizing each stage of the melt season.
4.1 Pre-freshet in May
4.1.1 Spring bloom phase determination
Spring blooms in the West Spitsbergen fjords typically occur between April and June, triggered by water column stabilization and increasing solar irradiance, and sustained by nutrient replenishment from winter convection (
Daily surface chlorophyll a concentrations derived from satellite data (CMEMS biogeochemical products, 4 km resolution, April 1 – May 11 2018) for the Nordic Seas (10°W–30°E, 70–82°N) revealed a notable increase in phytoplankton biomass in the second half of April on the West Spitsbergen Shelf, progressively advancing towards Isfjorden, where peak values were detected in early May. This timing places the bloom approximately two weeks earlier than reported by
Further insights from high-resolution in situ data collected at the “Isfjorden Adventfjorden” (IsA) time series station (UNIS, 2011–2019;
Collectively, the comparison of our data with high-resolution seasonal UNIS observations, satellite records, and mooring data supports the conclusion that our sampling captured the late phase of the spring bloom (approximately one week after the peak), at chlorophyll a concentrations consistent with bloom thresholds (
4.1.2 Protist community structure
During our May sampling, protist communities reflected a typical late-bloom scenario, dominated by spore-forming diatoms (Chaetoceros, Thalassiosira) and the colony-forming prymnesiophyte Phaeocystis pouchetii, mirroring the floristic composition observed in Isfjorden during the springs of 2012–2014 (
P. pouchetii, commonly found in springtime assemblages across Svalbard fjords (e.g., Kongsfjorden:
Our observations of P. pouchetii dominance in May align with broader Arctic trends that suggest an increasing prevalence of this taxon under ongoing climate change. Shifts favoring Phaeocystis over diatoms are expected to increase the proportion of organic carbon that is remineralized within the water column, thereby weakening the coupling between primary producers and traditional pelagic–benthic food webs (
The Phaeocystis–diatom assemblage was accompanied by a diverse but relatively low-biomass community of dinoflagellates and small flagellates, predominantly ≤10 µm in size, which were evenly distributed across Isfjorden. Among the dinoflagellates, unarmored (naked) taxa were more prevalent than thecate (armored) forms. Members of the order Gymnodiniales, particularly Gymnodinium and Gyrodinium species, were especially numerous. Due to fragile cell structures and limited distinguishing morphological features, many Gymnodinium and Gyrodinium taxa were identified only to the genus level with associated size classes – an approach commonly used in studies of this group (
Marine-derived particulate organic matter predominated in May, likely sustained by early-season protists; however, near river inlets (RE), early signs of the approaching freshet – such as reduced salinity, elevated turbidity, higher NH4+ concentrations, and the presence of potentially ice-associated diatoms (Pennales 20–30 µm, Fragilariopsis cylindrus, Navicula transitans) – foreshadowed the transition to a regime increasingly shaped by terrestrial inputs (
4.2 Spring-freshet in June
In June, Isfjorden experienced a distinct early summer bloom, characterized by higher protist abundances and chlorophyll a concentrations compared to the late spring bloom in May, except at marine basin stations (notably IsK and ME-3), where diatom-driven peaks had already occurred in May. These patterns are consistent with high-frequency observations from Adventfjorden (IsA) in 2018 reported by
The Chrysochromulina bloom observed in June 2018 echoes earlier observations in West Spitsbergen fjords. In Adventfjorden (summer 2013), it comprised 75–81% of the community, with abundances comparable to spring bloom levels (
In the early summer 2018, Chrysochromulina was abundant across nearly all stations, peaking in Billefjorden at stations B-RE and B-Outer. Maximum surface abundances reached 34.63 × 108 and 42.20 × 108 cells m-3, respectively. Even at 15 m depth, concentrations remained elevated, albeit reduced by 1.5–2.5 times. Similarly high values were recorded at station IsK in the marine basin (15.55 × 108 cells m-3), suggesting possible downstream advection from Billefjorden. Notably, these bloom hotspots in Billefjorden coincided with markedly elevated phosphate concentrations. PO4³- levels reached 2.48 mmol m-3 at the surface and 3.26 mmol m-3 at 15 m at B-RE, and 1.96 and 1.63 mmol m-3 at B-Outer, respectively. Other nearby stations also showed locally elevated values, such as B-NC (1.36 mmol m-3 at the surface) and B-Inner (0.52 mmol m-3 at 15 m), while the fjord-wide median remained at ~0.1 mmol m-3.
Multiple sources likely contributed to this enrichment. Exceptionally warm air and water temperatures in mid-summer 2018 (
It is worth noting that comparable Chrysochromulina-dominated events have been observed in other systems with similar seasonal freshwater influences and stratification dynamics. For instance,
The distribution of Chrysochromulina closely resembled that of “Indeterminate 1”, which reached its maximum at B-Outer (10.91–12.90 × 108 cells m-3, maximum at 15 m depth). Despite its repeated detection in Arctic monitoring programs (Nordic Seas, Barents Sea, and Svalbard fjords), it has historically remained numerically marginal and poorly characterized. Due to its low abundance and uncertain taxonomic placement, residual data for this taxon have been underreported. Previous attempts at identification, including efforts under the TaxMArc project, failed to resolve its taxonomic position, though multiple experts recognized it from various Arctic regions. Given its episodic dominance, future work will prioritize comprehensive taxonomic resolution of this and similar unclassified protists.
The second unidentified protist, “Indeterminate 2”, was primarily confined to Adventfjorden. Subsurface maxima (15 m) ranged from 4.94 to 7.79 × 108 cells m-3 at stations near the river mouth (A-F1) and fjord interior (AF-2, A-NC), with the highest surface abundance (10.49 × 108 cells m-3) recorded at the fjord entrance (IsA). Meltwater influence in Adventfjorden was evidenced by declining DIN (from 3.57 to 0.47 mmol m-3), decreasing SiO2 (16.68 to 1.25 mmol m-3), and a marked turbidity gradient (46.33 to 4.33 FTU) with increasing distance from the runoff source. Secchi depth correspondingly increased from 0.3 to 2.5 m. Interestingly, PO43- – with maximum concentrations over ten times lower than in Billefjorden – exhibited a reverse gradient, decreasing from the outer (0.23 mmol m-3) to the inner (0.05 mmol m-3) sites, in contrast to both other nutrients in Adventfjorden and the shoreward increase observed in Billefjorden.
Of note, “Indeterminate 2” reappeared in late August 2022 in Hornsund (Gåshamna, unpublished data), at a site similarly influenced by river runoff, where a Chrysochromulina bloom had been documented in July 2013. Such coincidences suggest comparable environmental preferences, indicating strong adaptation to freshened, turbid surface waters. Although the association of some “Indeterminate 2” cells with the genus Heterosigma remains tentative, morphological characteristics support this interpretation. Given the ecological significance of Heterosigma, particularly its co-occurrence with potentially harmful Chrysochromulina blooms, these findings raise concerns about the risk of harmful algal blooms in Svalbard’s runoff-influenced summer waters.
The widespread dominance of small flagellates across all habitats in June also prompts consideration of their role as a food base for zooplankton. Zooplankton abundances were notably lower than in May, with highest densities in the river estuary (~5000 ind. m-3) and approximately half that in other regions (~2500 ind. m-3;
4.3 Late-summer runoff in August
As the melt season progressed from snowmelt in June to intensified glacial and permafrost runoff in August, protistan plankton communities declined in abundance while retaining a composition reminiscent of early summer. Such a qualitatively similar but quantitatively diminished continuation of the early-season community typically characterizes the West Spitsbergen fjords in late summer (e.g.,
The least abundant protistan communities were recorded in river estuaries (maximum 0.24 × 108 cells m-3) and glacier-dominated inlets, such as Billefjorden and Tempelfjorden (maximum 0.07 × 108 cells m-3), despite elevated concentrations of DIN and SiO2 associated with intensified meltwater runoff. This decoupling between nutrient supply and phytoplankton abundance aligns with previous studies showing that turbidity-driven light limitation in glacially influenced fjords can suppress primary production even in nutrient-rich environments (e.g.,
Protist abundances increased progressively with distance from the inner fjord (approximately doubling between successive stations), following a pattern observed in Arctic glacier-fed systems – for example,
With the exception of a few planktonic and benthic diatoms recorded at T-Inner and IsA, the group was largely confined to the outer fjord stations. More diverse and abundant assemblages – including Thalassiosira, Pseudo-nitzschia, Lennoxia, Chaetoceros, Cylindrotheca, and small pennate diatoms (5–30 µm) – were observed at IsK and IsG, near the fjord entrance. This spatial pattern is likely driven by the inflow of AW, as indicated by TS diagrams, which may have facilitated diatom advection into these regions and enhanced nutrient availability. Additionally, improved underwater light conditions in these clearer areas (SD up to 7.2 m) likely supported phototrophic growth, enabling diatoms to persist and diversify compared to the more turbid inner fjord zones.
Despite AW influence, zooplankton communities did not mirror patterns of advection. Small copepods (dominated by Oithona similis, followed by Pseudocalanus spp. and Microcalanus spp.) accounted for ~70% of zooplankton across all habitats, with modest overall densities (~3000 ind. m-3 in estuaries, peaking at ~4000 ind. m-3 in outer fjord areas, and declining to ~2000 ind. m-3 at marine endpoints;
Of the early summer dominants, only non-identified nanoflagellates persisted, but in minimal numbers. “Indeterminate 2” was restricted to the central part of Isfjorden (IsK, IsA; 0.01–0.03 × 108 cells m-3), while “Indeterminate 1” was present across all habitats except RE, peaking at station A-NC (0.07 × 108 cells m-3). Chrysochromulina, a key player in June, was entirely absent by late summer. As in previous months, ciliates, mainly represented by Oligotrichea (~95% of identified taxa), remained a minor component of the community (~1% of total protist abundance). Most (0.18 × 108 cells m-3) were found in Adventfjorden at A-NC (15 m), composed almost entirely (99.47%) of Lohmanniella oviformis. The overall low ciliate abundance is consistent with previous observations that these taxa favor open shelf and oceanic waters over West Spitsbergen fjords (
While our study, spatially limited to Isfjorden and vertically constrained to the upper water column, cannot fully resolve ciliate distributions and habitat preferences, the declining abundances of this group across the melt season (May: 3.15 × 108; June: 1.37 × 108; August: 0.26 × 108 cells m-3) merit attention. Although ciliates were present in the majority of samples, their abundances were generally low, with slightly higher values recorded only in May during the pre-freshet phase of the melt season, particularly in the RE and IF regions. The highest abundance was observed at station T-RE-Sassen (0.15 × 108 cells m-3). Potential drivers of their minimal contribution during later months of intensified meltwater input – beyond grazing by planktonic consumers – include clogging of feeding structures by fine sediments, cell aggregation increasing sinking rates, osmotic stress from surface freshening, and reduced vertical migration due to enhanced stratification. These processes may act in combination, as demonstrated by
4.4 Picophytoplankton: a missing piece
Although only nano- and microplankton were quantified in our study, environmental conditions and the observed community composition suggest that picophytoplankton likely co-occurred and contributed to ecosystem processes. The persistent dominance of nanoflagellates throughout the melt season, particularly during the spring freshet, coincided with conditions that typically favor picophytoplankton (≤2 µm): strong stratification, high turbidity, and reduced light availability (
Yet despite their ecological relevance, picophytoplankton remain among the least studied components of Arctic plankton communities, including those in Svalbard waters (
Despite these challenges, existing studies offer valuable insight into the seasonal dynamics and distribution of picophytoplankton in Svalbard coastal waters. Eukaryotic picoplankton, particularly Micromonas spp. (e.g.,
As with larger planktonic fractions (e.g.,
Although our conclusions are based solely on nano- and microplankton, the observed patterns may nonetheless reflect broader trends reported for the entire microbial community, including picophytoplankton. Freshwater-driven stratification and nutrient enrichment appear to support elevated productivity of small, motile protists in nearshore waters – even under high turbidity and limited light availability. These findings align with in vitro experiments by
Statements
Data availability statement
The original contributions presented in the study are included in the article/Supplementary Material. Further inquiries can be directed to the corresponding author/s.
Author contributions
AD: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Project administration. MaM: Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – review & editing. MiM: Methodology, Writing – review & editing. AP: Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – review & editing.
Funding
The author(s) declare financial support was received for the research and/or publication of this article. This study received funding from the Norwegian Research Council (TerrACE project, grant no. 268458) and the GRIEG programme, financed by the Norwegian Financial Mechanism 2014-2021 (grant agreement UMO-2019/34/H/ST10/00504).
Acknowledgments
We thank the students, colleagues, and the UNIS logistics team, as well as the crews of RV Helmer Hansen and Clione, for their invaluable assistance during fieldwork. We are also grateful to Józef Wiktor (IO PAN) for insightful discussions of the results, to Anna Vader (UNIS) for sharing multi-year environmental and biological data from the IsA Arctic marine time series, and to Philipp Assmy (NPI) for valuable insights into the 2018 environmental conditions in the West Spitsbergen fjords. Special thanks go to Małgorzata Merchel (IO PAN) for selecting and analyzing satellite data and producing the chlorophyll a concentration maps.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmars.2025.1631963/full#supplementary-material
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Summary
Keywords
European Arctic, phytoplankton succession, flagellated protists, nanoplankton blooms, Chrysochromulina, warming impact, turbidity effects, nutrient dynamics
Citation
Dąbrowska AM, McGovern M, Mazurkiewicz M and Poste A (2025) Seasonal patterns and environmental drivers of protistan plankton along a terrestrial–marine gradient in Isfjorden (Svalbard). Front. Mar. Sci. 12:1631963. doi: 10.3389/fmars.2025.1631963
Received
20 May 2025
Accepted
25 August 2025
Published
18 September 2025
Volume
12 - 2025
Edited by
Erin Kunisch, Norwegian University of Science and Technology, Norway
Reviewed by
Maria Lund Paulsen, Ministry of Environment (Denmark), Denmark
Miriam Marquardt, UiT The Arctic University of Norway, Norway
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© 2025 Dąbrowska, McGovern, Mazurkiewicz and Poste.
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*Correspondence: Anna Maria Dąbrowska, dabrowska@iopan.pl; Maeve McGovern, maeve.mcgovern@niva.no
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