Abstract
Excessive enzyme activity often has pathological consequences. This for example is the case in thrombosis and hereditary angioedema, where serine proteases of the coagulation system and kallikrein-kinin system are excessively active. Serine proteases are controlled by SERPINs (serine protease inhibitors). We here describe the basic biochemical mechanisms behind SERPIN activity and identify key determinants that influence their function. We explore the clinical phenotypes of several SERPIN deficiencies and review studies where SERPINs are being used beyond replacement therapy. Excitingly, rare human SERPIN mutations have led us and others to believe that it is possible to refine SERPINs toward desired behavior for the treatment of enzyme-driven pathology.
Introduction
Serine proteases are the “workhorses” of the human body. This enzyme family is conserved throughout evolution. There are 1,121 putative proteases in the human body, and about 180 of these are serine proteases (, ). They are involved in diverse physiological processes, ranging from blood coagulation, fibrinolysis, and inflammation to immunity (Figure 1A). The activity of serine proteases is amongst others regulated by a dedicated class of inhibitory proteins called SERPINs (serine protease inhibitors). So far, 37 SERPINs have been identified in the human body. Thirty of these are functional protease inhibitors (, ). Human SERPINs are subdivided into 9 subgroups (clade A to I) based on their phylogenetic relationship (). It is noteworthy that SERPINs are generally capable of inhibiting multiple enzymes. Rather than being considered promiscuous, they appear selective in the sense that the targeted enzymes are often part of a conserved biological mechanism. This for instance is the case for antithrombin (AT), that inhibits multiple enzymes all involved in the coagulation system.
Figure 1
Structure
SERPINs generally consist of ~ 350–400 amino acid residues, for example, α1-antitrypsin (α1AT) has 394 amino acids. Their molecular weight varies between 40 and 100 kDa due to differences in their glycosylation profile. They are highly expressed in the liver, but are expressed ubiquitously throughout the body (
Mechanism of Action
SERPINs inhibit target enzymes through a conserved mechanism (
Key Determinants for SERPIN Functionality
Four features are important for proper SERPIN functionality. Two of these are structural, the other two are sequence-based motifs.
Reactive Center Loop Mobility
Mobility of the RCL enables loop insertion into β-sheet A after protease cleavage, which is critical for SERPIN stabilization and enzyme inhibition. The N-terminal sequence that precedes the cleavage site (P15-P9), the so-called hinge region, facilitates RCL mobility, and loop insertion (
Table 1
| SERPIN | N-terminal | ![]() | P4 | P3 | P2 | P1 | P1′ | P2' | P3' | P4' | ![]() | C-terminal | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| INHIBITORY | |||||||||||||||||||||||||||||||
| SERPINA1 | G | T | E | A | A | G | A | M | F | L | E | A | I | P | M | S | I | P | P | E | V | – | – | – | – | K | F | N | K | P | F |
| SERPINA2 | G | T | E | A | T | G | A | P | H | L | E | E | K | A | W | S | K | Y | Q | T | V | – | – | – | – | M | F | N | R | P | F |
| SERPINA3 | G | T | E | A | S | A | A | T | A | V | K | I | T | L | L | S | A | L | V | E | T | R | T | I | V | R | F | N | R | P | F |
| SERPINA4 | G | T | E | A | A | A | A | T | T | F | A | I | K | F | F | S | A | Q | T | T | N | R | H | I | L | R | F | N | R | P | F |
| SERPINA5 | G | T | R | A | A | A | A | T | G | T | I | F | T | F | R | S | A | R | L | N | S | Q | R | L | V | – | F | N | R | P | F |
| SERPINA9 | G | T | E | A | T | A | A | T | T | T | K | F | I | V | R | S | K | D | G | S | Y | F | T | V | S | – | F | N | R | T | F |
| SERPINA10 | G | T | E | A | V | A | G | I | L | S | E | I | T | A | Y | S | M | P | P | V | I | – | – | – | – | K | V | D | R | P | F |
| SERPINA11 | G | T | E | A | G | A | A | S | G | L | L | S | Q | P | P | S | L | N | T | M | S | D | P | H | A | H | F | N | R | P | F |
| SERPINA12 | G | T | E | G | A | A | G | T | G | A | Q | T | L | P | M | E | T | P | L | V | V | K | I | – | – | – | – | D | K | P | Y |
| SERPINB1 | G | T | E | A | A | A | A | T | A | G | I | A | T | F | C | M | L | M | P | E | E | N | – | F | T | A | – | D | H | P | F |
| SERPINB2 | G | T | E | A | A | A | G | T | G | G | V | M | T | G | R | T | G | H | G | G | P | Q | – | F | V | A | – | D | H | P | F |
| SERPINB3 | G | A | E | A | A | A | A | T | A | V | V | G | F | G | S | S | P | T | S | T | N | E | E | F | H | C | – | N | H | P | F |
| SERPINB4 | G | V | E | A | A | A | A | T | A | V | V | V | V | E | L | S | S | P | S | T | N | E | E | F | C | C | – | N | H | P | F |
| SERPINB6 | G | T | E | A | A | A | A | T | A | A | I | M | M | M | R | C | A | R | F | V | P | R | – | F | C | A | – | D | H | P | F |
| SERPINB7 | G | T | E | A | T | A | A | T | G | S | N | I | V | E | K | Q | L | P | Q | S | T | L | – | F | R | A | – | D | H | P | F |
| SERPINB8 | G | T | E | A | A | A | A | T | A | V | V | R | N | S | R | C | S | R | M | E | P | R | – | F | C | A | – | D | H | P | F |
| SERPINB9 | G | T | E | A | A | A | A | S | S | C | F | V | V | A | E | C | C | M | E | S | G | P | R | F | C | A | – | D | H | P | F |
| SERPINB10 | G | T | E | A | A | A | G | S | G | S | E | I | D | I | R | I | R | V | P | S | I | E | – | F | N | A | – | N | H | P | F |
| SERPINB11 | G | T | E | A | A | A | A | T | G | D | S | I | A | V | K | S | L | P | M | R | A | Q | – | F | K | A | – | N | H | P | F |
| SERPINB12 | G | T | Q | A | A | A | A | T | G | A | V | V | S | E | R | S | L | R | S | W | V | E | – | F | N | A | – | N | H | P | F |
| SERPINB13 | G | T | E | A | A | A | A | T | G | I | G | F | T | V | T | S | A | P | G | H | E | N | V | H | C | – | – | N | H | P | F |
| SERPINC1 | G | S | E | A | A | A | S | T | A | V | V | I | A | G | R | S | L | N | P | N | R | V | T | F | K | A | – | N | R | P | F |
| SERPIND1 | G | T | Q | A | T | T | V | T | T | V | G | F | M | P | L | S | T | Q | V | R | – | – | – | F | T | V | – | D | R | P | F |
| SERPINE1 | G | T | V | A | S | S | S | T | A | V | I | V | S | A | R | M | A | P | E | E | I | I | M | – | – | – | – | D | R | P | F |
| SERPINE2 | G | T | K | A | S | A | A | T | T | A | I | L | I | A | R | S | S | P | P | W | – | – | – | F | I | V | – | D | R | P | F |
| SERPINE3 | G | T | K | A | S | G | A | T | A | L | L | L | L | K | R | S | R | I | P | I | – | – | – | F | K | A | – | D | R | P | F |
| SERPINF2 | G | V | E | A | A | A | A | T | S | – | I | A | M | S | R | M | S | L | S | S | – | – | – | F | S | V | – | N | R | P | F |
| SERPING1 | G | V | E | A | A | A | A | S | A | – | I | S | V | A | R | T | L | L | V | – | – | – | – | F | E | V | – | Q | Q | P | F |
| SERPINI1 | G | S | E | A | A | A | V | S | G | M | I | A | I | S | R | M | A | V | L | Y | P | Q | V | I | V | - | – | D | H | P | F |
| SERPINI2 | G | S | E | A | A | T | S | T | G | I | H | I | P | V | I | M | S | L | A | Q | S | Q | - | F | I | A | – | N | H | P | F |
| NON-INHIBITORY | |||||||||||||||||||||||||||||||
| SERPINA6 | G | V | D | T | A | G | S | T | G | V | T | L | N | L | T | S | K | P | I | I | L | R | N | Q | – | – | – | – | – | P | F |
| SERPINA7 | G | T | E | A | A | A | V | P | E | V | E | L | S | D | Q | P | E | N | T | F | L | H | P | I | I | Q | I | D | R | S | F |
| SERPINA8 | E | R | E | P | T | E | S | T | Q | Q | L | N | K | P | E | V | L | E | V | T | L | N | R | – | – | – | – | – | – | P | F |
| SERPINB5 | G | G | D | S | I | E | V | P | G | A | R | I | L | Q | H | K | D | E | – | – | L | N | A | D | H | – | – | – | – | P | F |
| SERPINF1 | G | A | G | T | T | P | S | P | G | L | Q | P | A | H | L | T | F | P | – | – | L | D | Y | H | L | N | Q | – | – | P | F |
| SERPINH1 | G | N | P | F | D | Q | D | I | Y | G | R | E | E | L | R | S | P | K | – | – | L | F | Y | A | D | H | – | – | – | P | F |
Amino acid sequence alignments of human SERPIN reactive center loop.
Lawrence et al. created a plasminogen activator inhibitor 1 (PAI-1) mutant library, which contains 15 different amino acid substitutions at P14 of PAI-1. Results demonstrate that substitutions with a charged residue at P14, which is normally a small uncharged residue in most of inhibitory SERPINs, significantly retard the inhibitory function of PAI-1 and convert it to a substrate (
Reactive Center Loop Length
The length of the N-terminal portion of the RCL is conserved among the members of SERPIN family (Table 1). It has been shown that the length of the RCL critically impacts the kinetic stability of the serpin-protease complex. The length of the RCL, especially the N-terminal portion, should fit the length of β-sheet A to insert in between the sheets during enzyme inhibition. A study by Zhou et al. showed that modifying the RCL length by adding one or two residues dramatically reduced the stability of the complex by up to 1,000,000-fold (
Protease Recognition Sequence
In order for a SERPIN to acts as a bait, its RCL contains a sequence motif that is specifically recognized by target enzymes. Interestingly, amino acid sequences adjacent to the cleavage site are highly variable between different SERPINs (Table 1). This variation partially explains their different specificities.
Anderson et al. successfully shifted the target specificity of one of the SERPINs, α1AT through mutagenesis from an inhibitor of neutrophil elastase (an extracellular enzyme) into an inhibitor of furin (an intracellular enzyme). The minimal P4-P1 peptide sequence that is required for recognition and an efficient cleavage by furin is -Arg (R)-X-X-R- (
Exosites
The specificity of SERPINs is not only determined by their RCL sequences, but also by exosites (
Lessons From Human SERPIN Deficiencies
SERPIN deficiencies show us how SERPINs are involved in physiology.
Alpha 1-Antitrypsin (α1AT)
Alpha 1-antitrypin is a 52 kDa glycoprotein that strongly inhibits neutrophil elastase. It is encoded by the SERPINA1 gene (
C1 Esterase Inhibitor (C1INH)
C1INH is encoded by the SERPING1 gene. It is a heavily glycosylated glycoprotein (105 kDa; six N- and ten O-glycosylation sites) (
The clinical phenotype of C1INH deficiency is surprising. Rather than a complement-related disorder, C1INH deficiency causes an overproduction of bradykinin because of an under-regulated contact system. This subsequently leads to hereditary angioedema (
Compared to other SERPINs, C1INH is a relatively poor protease inhibitor, which generally inhibits its targets at the rate constants of about 105 M−1.s−1. By comparison, other SERPINs such as α1AT, AT, PAI-1, and α2AP have rate constants of about 107 M−1.s−1 (
Similar to α1AT, some mutations can cause C1INH polymerization and subsequent hepatocellular accumulation (
Antithrombin
Antithrombin is a broad inhibitor of blood coagulation proteases. It inhibits thrombin and factor Xa (FXa) and to a lesser extent, factor IXa, XIa, XIIa, PKa, tissue plasminogen activator, urokinase, and plasmin (
SERPINs as Therapeutic Agents Beyond Replacement Therapy
SERPIN replacement therapies are valuable to restore deficiencies. However, SERPINs have also been studied in animal studies for their therapeutic potential beyond this application. For example, C1INH has been investigated for its therapeutic benefit toward a number of inflammation-related complications. In a porcine model for hemorrhage, a bolus injection of recombinant human C1INH, decreased tissue complement activation and attenuated metabolic acidosis. Furthermore, it reduced circulating tumor necrosis factor α and attenuated renal, intestinal, and lung injury in a dose-dependent manner (
In clinical studies, administration of C1INH was found to attenuate renal function, but not overall mortality in septic patients (
Lessons From α1AT-Pittsburgh
Alpha 1 antitrypsin-Pittsburgh is a rare mutation within the RCL of α1AT. It was first reported in 1,978 and caused severe bleeding episodes in a boy who carried the mutation (
Alpha 1 antitrypsin-Pittsburgh has been investigated as a therapy for sepsis. In this setting, thrombin and APC, are thought to contribute to cardinal manifestations of gram-negative septicemia, including hypotensive shock and disseminated intravascular coagulation. Recombinant α1AT-Pittsburgh was investigated in a piglet Pseudomonas aeruginosa sepsis model (
Designer SERPINs
Refined Versions of α1AT-Pittsburgh
In order to narrow down the specificity of α1AT-Pittsburgh to FXIIa and PKa, Schapira et al. (
In 2002, Sulikowski et al. (
Another interesting, more recent example of therapeutic SERPIN development is found in the field of hemophilia. In this bleeding disorder, Polderdijk et al. (
All in all, these studies demonstrate the possible applications of SERPINs beyond replacement therapy. Presently, SERPIN therapies are very costly. For example, the cost of a single-used vial of plasma-derived C1INH is up to $2,300/500 units (
We expect that an α1AT variant with the inhibitory profile of C1INH will retain this favorable property, enabling cost-effective prophylactic therapy. Finally, liver-specific expression of (designer) SERPINs through gene therapy holds great promise for long-term treatment of enzyme-driven disorders.
Conclusion
Together, these studies show that engineered SERPINs hold promise for the treatment of a wide variety of diseases. This motivates researchers to find ways to improve this unique class of molecules and extend their application well-beyond disorders in the hemostatic system.
Statements
Author contributions
WS, CM, and SdM performed literature searches and wrote the manuscript.
Acknowledgments
WS gratefully acknowledges financial support from the Royal Thai Government. CM gratefully acknowledges the Landsteiner Foundation for Blood Transfusion Research and the Netherlands Thrombosis Foundation.
Conflict of interest
CM is consultant to Shire. CM and SdM are founders of SERPINx BV, a biotech spinout company of University Medical Center Utrecht. The remaining author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
SERPIN (serine proteinase inhibitor), protein engineering, bradykinin (BK), hemostasis, therapy
Citation
Sanrattana W, Maas C and de Maat S (2019) SERPINs—From Trap to Treatment. Front. Med. 6:25. doi: 10.3389/fmed.2019.00025
Received
30 November 2018
Accepted
25 January 2019
Published
12 February 2019
Volume
6 - 2019
Edited by
Marvin T. Nieman, Case Western Reserve University, United States
Reviewed by
Daniel A. Lawrence, University of Michigan, United States; Thomas Renne, University Medical Center Hamburg-Eppendorf, Germany; Paulo Antonio De Souza Mourão, Universidade Federal do Rio de Janeiro, Brazil
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Copyright
© 2019 Sanrattana, Maas and de Maat.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Steven de Maat S.demaat@umcutrecht.nl
This article was submitted to Hematology, a section of the journal Frontiers in Medicine
Disclaimer
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

