Frontiers in Microbiomes

Original Research

Published on 13 Aug 2026

A generalized supervised contrastive learning framework for integrative multi-omics prediction models

in Omics and Bioinformatics for Microbiomes

Sen Yang
Shidan Wang
Yiqing Wang
Ruichen Rong
Bo Li
Andrew Y. Koh
Guanghua Xiao
Qiwei Li
Dajiang Liu
Xiaowei Zhan

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1825540

362 views

Original Research

Accepted on 12 Aug 2026

Compound Microbial Intelligent Membrane Fermentation Reshapes the Virome and Reduces Various Resistance Genes in Duck Litter

in Nutrition, Metabolism and the Microbiome

Teicheng Sun
Guiheng Mei
Junru Mo
Meiqin Li
Yan-mei Ma
Mengshi Zhao
Song Peng
Fengqiang Lin
Ji-Long Chen
Yaxiong Ma

Frontiers in Microbiomes

Original Research

Published on 11 Aug 2026

Enhancing cow manure composting via staged inoculation of functional microbial consortia

in Environmental Microbiomes

Huanyao Li
Weimin Zeng
Jin Huang
Shiyong Tan

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1855343

428 views

Original Research

Published on 07 Aug 2026

Modulation of the rumen microbiome and metabolism in dairy cows by altering the concentrate feeding pattern and the inclusion of Saccharomyces cerevisiae yeast

in Nutrition, Metabolism and the Microbiome

Timothy J. Snelling
Catherine A. Johnson
Helen E. Warren
Jules Taylor-Pickard
James A. Huntington
Liam A. Sinclair

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1884444

654 views

Brief Research Report

Accepted on 05 Aug 2026

Host identity dominates over intra-ruminal spatial variation in shaping the rumen microbiome of Holstein–Friesian dairy cows

in Host and Microbe Associations

Soumya Kanti Kar
Edoardo Zaccaria
Léon Šebek
Sanne Van Gastelen

Frontiers in Microbiomes

134 views

Review

Published on 05 Aug 2026

Decoding the rhizosphere microbiome against Sclerotium rolfsii: integrating multi-omics and AI-driven predictive models

in Omics and Bioinformatics for Microbiomes

Arpita Das
Praveen Boddana
Priyanka Paul
Padripta Banerjee
Siddhartha Das

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1884781

455 views

Brief Research Report

Accepted on 03 Aug 2026

The circulating metatranscriptome in acute myeloid leukemia patients: an RNA-seq reanalysis

in Omics and Bioinformatics for Microbiomes

An Dinh Duy Nguyen
Roshan Kern
Tatiana Dombrovski
Thomas LaFramboise

Frontiers in Microbiomes

216 views

Mini Review

Accepted on 03 Aug 2026

Gut Microbiome Modulation by Diet and Lifestyle in Kidney Stone Disease and Autism Spectrum Disorder: Emerging Mechanisms and Translational Prospects

in Nutrition, Metabolism and the Microbiome

Girish Badrinath Mahajan

Frontiers in Microbiomes

195 views

Review

Published on 31 Jul 2026

From cooperation to collapse: the diet-microbiota-host gene triad in disease and aging

in Host and Microbe Associations

Shreya Bhattacharjee
Arnab Mukhopadhyay

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1872481

741 views

Correction

Published on 30 Jul 2026

Correction: Soil microbial communities shift in response to cropping sequence diversification with perennial seed crops

in Environmental Microbiomes

Newton Z. Lupwayi
Nityananda Khanal
Mathew Richards
Rodrigo Ortega Polo

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1934327

289 views

Original Research

Published on 29 Jul 2026

Placental and maternal microbiome adaptations in a preeclamptic-like mouse model

in Host and Microbe Associations

Kalie F. Beckers
Christopher J. Schulz
Juliet P. Flanagan
Chin-Chi Liu
Gary W. Childers
Isabella N. Faulkner
Jenny L. Sones

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1881824

405 views

Original Research

Published on 29 Jul 2026

Gut microbiota signatures differentiate trajectory-defined response phenotypes and predict self-management outcomes in irritable bowel syndrome

in Omics and Bioinformatics for Microbiomes

Jie Chen
Aolan Li
Weizi Wu
Wanli Xu
Tingting Zhao
Angela R. Starkweather
Leonel Rodriguez
Ming-Hui Chen
Xiaomei S. Cong

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1884540

746 views

Correction

Published on 27 Jul 2026

Correction: Altered early-life gut microbiota in offspring of pregnancies complicated by CHD-associated pulmonary hypertension

in Host and Microbe Associations

Yiyang Han
Haofeng Zhang
Jun Zhang

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1932978

297 views

Original Research

Published on 27 Jul 2026

Perinatal antibiotics in a db/db mouse model impact obesity and hyperglycemia in a microbiome-dependent manner

in Nutrition, Metabolism and the Microbiome

Noelle Curtis-Joseph
Audra Laubi
Melanie Ortiz-Alvarez de la Campa
Peter Belenky

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1750320

717 views

Review

Published on 24 Jul 2026

Functional genetic signatures of the gut microbiome in cardiometabolic diseases: mechanisms and translational opportunities

in Nutrition, Metabolism and the Microbiome

Martin Nganga Muigano

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1847345

710 views

Mini Review

Published on 24 Jul 2026

Gut microbiome modulation for military resilience and performance

in Nutrition, Metabolism and the Microbiome

Emma F. Murphy
Iain Templeman
Joanna Rimmer
Sarah V. Harding

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1828981

714 views

Review

Accepted on 22 Jul 2026

Endophyte-Mediated Pest Resistance: Mechanisms, Evidence Gaps, and Translational Opportunities

in Environmental Microbiomes

Soumik Dey Roy
Debamitra Chatterjee
Ritika Thakur
Swarnali Bhattacharya
Ajoy Kumar Mukhopadhyay
Palash Mondal
Aniruddha Pramanik
Hirak Chatterjee

Frontiers in Microbiomes

263 views

Original Research

Accepted on 22 Jul 2026

A Thousand Meters Deep: Vertical Profiling of Subterranean Microbes of Gourgouthakas Cave

in Environmental Microbiomes

Savvas Paragkamian
Christos A. Christakis
Vassiliki A. Michalopoulou
Maria Plakogiannaki
Stefanos Soultatos
Nikolaos P. Arapitsas
Markos Vaxevanopoulos
Yorgos Sotiriadis
Christos Pennos
Emmanouil A. Markakis

Frontiers in Microbiomes

283 views

Original Research

Accepted on 21 Jul 2026

Integrated Microbial and Endocrine Signatures of Obesity: Enterobacteriaceae Alterations, Hormonal Profiles, and Dietary Correlates in Adult Males

in Nutrition, Metabolism and the Microbiome

Ranjeet Kumar Vishwakarma
Bhupendra Singh Yadav
Minakshi Sahu
Priyanka Gautam
Gopal Nath

Frontiers in Microbiomes

275 views

Original Research

Published on 15 Jul 2026

Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease

in Omics and Bioinformatics for Microbiomes

Xiaowei Zhao
Stuart J. McCarter
Vinod K. Gupta
Kiera M. Grant
Erik K. St. Louis
Kejal Kantarci
Rodolfo Savica
Max Hill
Helen E. Vuong
Christopher Staley

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1834726

965 views

Original Research

Published on 13 Jul 2026

Synergistic interactions between biogenic organic matter and microbial dynamics during simulated senescent cyanobacterial blooms in freshwater mesocosms

in Environmental Microbiomes

Noémie Dechaux
Nina Guérin
Najet Thiney
Karine Escoubeyrou
Charlotte Duval
Sarah Fiorini
Charles-Hubert Paulin
Tarik Meziane
Emma Rochelle-Newall
Cécile Bernard

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1866641

679 views

Review

Published on 03 Jul 2026

Artificial intelligence in soil microbiome-driven agriculture: from practical limits to a translational roadmap

in Environmental Microbiomes

Acharya Balkrishna
Priyanka Chaudhary
Shelly Singh
Anishka Saini
Aditi Kumari
Khushi Ishika Mahato
Vedpriya Arya

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1860559

1,634 views

Original Research

Published on 23 Jun 2026

Nasal cavity microbial makeup and the influence on psychiatric symptoms following fire exposure in firefighters

in Host and Microbe Associations

Paul Grunsted
Chao Xu
Amanda Janitz
Jessica Reese
Janis Campbell
Tasha M. Santiago-Rodriguez
Sara J. Javornik Cregeen
Joseph F. Petrosino
Jooyeon Hwang

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1832151

1,059 views

Original Research

Published on 17 Jun 2026

Variation in cloacal microbiota of Canada goose (Branta canadensis) across rural and urban areas in Illinois, USA

in Host and Microbe Associations

Daniel B. Raudabaugh
Sara Villazan Perez-Girones
Nelda A. Rivera
Tooba Latif
Evan W. London
Nicole F. Pietrunti
Willian M. Brown
Nohra E. Mateus-Pinilla
Auriel M. V Fournier

Frontiers in Microbiomes

doi 10.3389/frmbi.2026.1820309

1,050 views

268 articles

articles

A generalized supervised contrastive learning framework for integrative multi-omics prediction models

Compound Microbial Intelligent Membrane Fermentation Reshapes the Virome and Reduces Various Resistance Genes in Duck Litter

Enhancing cow manure composting via staged inoculation of functional microbial consortia

Modulation of the rumen microbiome and metabolism in dairy cows by altering the concentrate feeding pattern and the inclusion of Saccharomyces cerevisiae yeast

Host identity dominates over intra-ruminal spatial variation in shaping the rumen microbiome of Holstein–Friesian dairy cows

Decoding the rhizosphere microbiome against Sclerotium rolfsii: integrating multi-omics and AI-driven predictive models

The circulating metatranscriptome in acute myeloid leukemia patients: an RNA-seq reanalysis

Gut Microbiome Modulation by Diet and Lifestyle in Kidney Stone Disease and Autism Spectrum Disorder: Emerging Mechanisms and Translational Prospects

From cooperation to collapse: the diet-microbiota-host gene triad in disease and aging

Correction: Soil microbial communities shift in response to cropping sequence diversification with perennial seed crops

Placental and maternal microbiome adaptations in a preeclamptic-like mouse model

Gut microbiota signatures differentiate trajectory-defined response phenotypes and predict self-management outcomes in irritable bowel syndrome

Correction: Altered early-life gut microbiota in offspring of pregnancies complicated by CHD-associated pulmonary hypertension

Perinatal antibiotics in a db/db mouse model impact obesity and hyperglycemia in a microbiome-dependent manner

Functional genetic signatures of the gut microbiome in cardiometabolic diseases: mechanisms and translational opportunities

Gut microbiome modulation for military resilience and performance

Endophyte-Mediated Pest Resistance: Mechanisms, Evidence Gaps, and Translational Opportunities

A Thousand Meters Deep: Vertical Profiling of Subterranean Microbes of Gourgouthakas Cave

Integrated Microbial and Endocrine Signatures of Obesity: Enterobacteriaceae Alterations, Hormonal Profiles, and Dietary Correlates in Adult Males

Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease

Synergistic interactions between biogenic organic matter and microbial dynamics during simulated senescent cyanobacterial blooms in freshwater mesocosms

Artificial intelligence in soil microbiome-driven agriculture: from practical limits to a translational roadmap

Nasal cavity microbial makeup and the influence on psychiatric symptoms following fire exposure in firefighters

Variation in cloacal microbiota of Canada goose (Branta canadensis) across rural and urban areas in Illinois, USA