Abstract
Tau-tubulin kinase (TTBK) belongs to casein kinase superfamily and phosphorylates microtubule-associated protein tau and tubulin. TTBK has two isoforms, TTBK1 and TTBK2, which contain highly homologous catalytic domains but their non-catalytic domains are distinctly different. TTBK1 is expressed specifically in the central nervous system and is involved in phosphorylation and aggregation of tau. TTBK2 is ubiquitously expressed in multiple tissues and genetically linked to spinocerebellar ataxia type 11. TTBK1 directly phosphorylates tau protein, especially at Ser422, and also activates cycline-dependent kinase 5 in a unique mechanism. TTBK1 protein expression is significantly elevated in Alzheimer’s disease (AD) brains, and genetic variations of the TTBK1 gene are associated with late-onset Alzheimer’s disease in two cohorts of Chinese and Spanish populations. TTBK1 transgenic mice harboring the entire 55-kilobase genomic sequence of human TTBK1 show progression of tau accumulation, neuroinflammation, and neurodegeneration when crossed with tau mutant mice. Our recent study shows that there is a striking switch in mononuclear phagocyte and activation phenotypes in the anterior horn of the spinal cord from alternatively activated (M2-skewed) microglia in P301L tau mutant mice to pro-inflammatory (M1-skewed) infiltrating peripheral monocytes by crossing the tau mice with TTBK1 transgenic mice. TTBK1 is responsible for mediating M1-activated microglia-induced neurotoxicity, and its overexpression induces axonal degeneration in vitro. These studies suggest that TTBK1 is an important molecule for the inflammatory axonal degeneration, which may be relevant to the pathobiology of tauopathy including AD.
TAUOPATHY AND TAU KINASES
The microtubule-associated protein tau (MAPT) is a physiological component of the microtubule architecture of neuronal axons (Weingarten et al., 1975). Hyperphosphorylated tau protein (pTau) is a principal component of neurofibrillary tangles (NFTs), which are a hallmark of tauopathies, such as Alzheimer’s disease (AD) and frontotemporal dementia (FTD; ; Wolozin et al., 1986; Iqbal et al., 1989). The human tau gene is segregated to a rare form of familial FTD with Parkinsonism linked to chromosome 17 (FTDP-17), demonstrating MAPT as a causative gene of neurodegenerative disorders (; ). The mechanism of NFT formation is centered around tau phosphorylation, mono-ubiquitination, and conformational changes of the protein from highly extended native form to paired helical filament (Ihara et al., 1986; Kosik et al., 1986). pTau found in NFT suggests that there is an imbalance between the tau kinase and phosphatase activities or some dysfunction in the clearance of pTau in affected human brain (Takashima et al., 1995; ; Jinwal et al., 2013). Tau protein is phosphorylated by multiple protein kinases, such as glycogen synthase kinase 3-β (GSK3β) and cycline-dependent kinase 5 (Cdk5; Ishiguro et al., 1991, 1992; ; Takashima et al., 1993). GSK3β and Cdk5 are suspected to play a major role in pathological phosphorylation of tau in the brain. As such, large efforts have been made to develop inhibitors toward these kinases (). One of the main disadvantages of targeting such kinases is their ubiquitous expression in multiple peripheral tissues, which warrants serious unwanted side effects. Brain-specific tau kinases are attractive targets for ameliorating the phosphorylation status of tau protein. Through the complementary DNA library screening of brain-specific kinases, we have identified tau-tubulin kinase 1 (TTBK1), which is uniquely expressed in neurons in the central nervous system (CNS) and can phosphorylate tau protein (Sato et al., 2006).
TAU-TUBULIN KINASE FAMILY
The TTBK family consists of TTBK1 (1321 a.a.; Sato et al., 2006) and TTBK2 (1244 a.a.; ). These two kinases belong to the casein kinase 1 (CK1) group, which contains CK1 (α1, α2, γ1, γ2, γ3, δ, and ε), TTBK (1 and 2), and vaccinia-related kinase (VRK) 1–3 (Figure 1A; Manning et al., 2002; Sato et al., 2006). CK1δ can phosphorylate tau in cultured cells and is known to be up-regulated in AD brain (Li et al., 2004). The alignment of the kinase domain of TTBK1 and CK1δ shows 38% identity and 52% similarity (Sato et al., 2006); therefore, TTBK1 is the closest relative of CK1, but not a member of CK1 family. The catalytic domain of TTBK1 is conserved in vertebrates, C. elegans, and D. melanogaster (Figure 1B). TTBK1 and TTBK2 amino acid sequences are 60% identical and 71% similar in the TTBK1 14–577 and TTBK2 1–589 regions. Their kinase domains (TTBK1 35–294 and TTBK2 21–280) are highly homologous (88% identity and 96% similarity). The rest of the sequences have no homology except a small domain (TTBK1 1053–1117 and TTBK2 942–1006 with 43% identity and 58% similarity). TTBK1 and TTBK2 are distinctly conserved among vertebrates from zebrafish (D. rerio) to human (Figure 1C). However, TTBK homologs in C. elegans (TTBK), C. capitata (TTBK1), and D. melanogaster (ASATOR) only conserve the catalytic domain of TTBK1 or TTBK2 (Figure 1C). Since the catalytic domain of TTBK1 and TTBK2 are highly homologous, this suggests that TTBK1 and TTBK2 genes are diversified from a common shorter TTBK gene during the evolution from invertebrates to vertebrates.
FIGURE 1
TTBK2
TTBK2 GENE AND PROTEIN FUNCTION
The human TTBK2 gene (Gene ID: 146057) is positioned on chromosome 15q15.2, and consisted with nine exons and 10 introns with a complementary DNA (cDNA) length of 6192bp. TTBK2 was previously extracted from bovine and mouse brain as a 36 kDa protein, and it phosphorylates tau protein at Ser208 and Ser210 (Takahashi et al., 1995; Tomizawa et al., 2001). TTBK2 is ubiquitously expressed in multiple tissues, such as placenta, liver, skeletal muscle, pancreas, heart, and brain. There is especially higher expression in the Purkinje cells and granular cell layer of the cerebellum, hippocampus, midbrain and substantia nigra (), on the other hand, lower expression is shown in the cortex. At a protein level, TTBK2 is highly expressed in brain and testis, which corresponds to the elevated kinase activity in these tissues ().
A recombinant kinase domain of mouse TTBK2 corresponds to human TTBK2 1–316 residues (98% identity), and the kinase domain (residues 1–331) of human TTBK2 was expressed in insect cells with a baculovirus overexpression system and crystallized (Kitano-Takahashi et al., 2007). Diffraction data were collected to 2.9 Å resolution, but so far no publication is available for the structural information. Consensus phosphorylation sites for CK1 isoforms is S/Tp-X-X-S/T, where S/Tp refers to a phosphoserine or phosphothreonine: X refers to any amino acid and the underlined residues refer to the target site (; ; Nakielny et al., 1991). The priming phosphorylation site is at the -3 position in the case of CK1. However, the preferred priming phosphorylation site is the tyrosine residue at the +2 position for TTBK2 (S/T-X-Yp), and either serine or threonine residue on the +2 position rather diminish the priming effect ().
Multiple biological functions of TTBK2 have recently been identified: TTBK2 is critical in the initiation of ciliogenesis, which is important for sonic hedgehog developmental pathway (; Tanos et al., 2013; Ye et al., 2014). TTBK2 may also play a role in mitosis: Asator, a TTBK2 homolog in Drosophila, is localized in the mitotic spindle and directly interacts with the spindle matrix protein Megator (Qi et al., 2009). TTBK2 may also be involved in anti-cancer drug resistance: TTBK2 increases the cell surface number of sodium-coupled glucose transporter (SLC5A1) in cancer cells and confers cell survival against anti-cancer drugs (). These studies indicate the diverse functions of TTBK2 in embryogenesis, mitosis and cell survival (Table 1). Further studies will be necessary for characterizing the function of TTBK2 in the CNS.
Table 1
| Genes | Chromosomal loci | Disease linkage | Expression | Function | Reference |
|---|---|---|---|---|---|
| TTBK1 | 6p21.1 | AD (GWAS) | The CNS (neuron) | Cdk5/GSK3β activation Tau aggregation Axonal degeneration | Sato et al. (2008)Xu et al. (2010b), Lund et al. (2013) |
| TTBK2 | 15q15.2 | SCA11 | Ubiquitous | Ciliogenesis Mitosis Cell survival | , Ye et al. (2014)Qi et al. (2009) |
Summary of TTBK family.
TTBK2 MUTATION IN SPINOCEREBELLAR ATAXIA 11 (SCA11)
Spinocerebellar ataxias (SCAs) are a heterogeneous group of neurodegenerative disorders characterized by poor coordination, abnormal eye movements, impairment of speech and swallowing, and pyramidal signs (Schols et al., 2004). Almost all affected individuals show cerebellar atrophy when tested by MRI. SCA11 is a pure progressive cerebellar ataxia that has been genetically linked to human chromosome 15q14–21 (Worth et al., 1999). The mean age of onset for the disease is 24.2 ± 8.4 years, ranging from 15–43. SCA11 is an autosomal dominant form of cerebellar ataxia and so far two families have been identified: a Caucasian family that traces its earliest known British ancestry to the 19th century and another of Pakistani ancestry, with five affected individuals present over three generations (Figure 2A; ; Johnson et al., 2008). Both families show genetically linked mutations in the TTBK2 gene, with the Caucasian family having a one-base insertion of an adenosine in exon 13 at nucleotide 1329 (codon 444), creating a premature stop site (TGA) in the mRNA at codon 450 and truncating the normal protein from 1,244 to 450 amino acids (Figure 2B, 1329InsA). The same mutation was also found in another case of SCA11 by next generation sequencing (Németh et al., 2013). The Pakistani family was associated with a frameshift deletion of two bases (GA) in exon 13 of TTBK2 at nucleotides 1284/1285, codons 428 and 429, creating a premature stop site (TGA) in the mRNA at codon 449 (Figure 2B, 1284/85DelAG). Transient expression study shows that SCA11-linked mutations of TTBK2 dramatically reduce the kinase activity to 10% of full-length TTBK2 and promote their nuclear localization (). TTBK2-1329InsA-knockin mice also show reduced kinase activity in vivo (). Since kinase-negative TTBK2 mutant also shows nuclear localization, the reduction of kinase activity and autophosphorylation may regulate its subcellular localization. The effect of TTBK2 nuclear localization on neurotoxicity is unknown. These mutations have no effect on the half-life of expressed TTBK2 proteins, which is approximately 24 h ().
FIGURE 2
Neuropathological examination with TTBK2 mutated brain also had been carried out (
TTBK2 truncation mutations found in the SCA11 families resulted in a shorter half-life of mRNA as compared to wild-type TTBK2 mRNA, suggesting the reduction in expression of TTBK2 by the mutations (
In addition to the two reported mutations on TTBK2 in SCA11 cases, a recent study also identified 1306_1307delGA mutation in exon 2 of one German and one French SCA11 cases (
TTBK1
TTBK1 GENE EXPRESSION AND DISTRIBUTION
Human TTBK1 gene (Gene ID: 84630), which we originally cloned, is positioned on chromosome 6p21.1 and consists of 14 exons and 15 introns with a cDNA length of 6932bp (Sato et al., 2006). The TTBK1 protein (UniProt ID: Q5TCY1) consists of 1,321 amino acids and has a kinase domain and a polyglutamate domain in the middle region of the sequence (Figure 1B). TTBK1 isoform2 was also recently identified (TTBK1–2, UniProt ID: Q5TCY1–2), which consists of 621 amino acids and share amino acids 52–540 and 1194–1229 of isoform1. Since isoform2 lacks in the N-terminal region of the consensus kinase domain, it likely has no kinase activity. TTBK1 mRNA was detected in cortex and cerebellum, and in fetal brain (Sato et al., 2006). In situ hybridization study on mouse brains detected strong expression of TTBK1 gene expression in the CA1 pyramidal cell layer of the hippocampus, perinuclear, and cytoplasmic regions of the large cortical pyramidal cell in the temporal cortex, and the Purkinje cell layer of the cerebellum (Sato et al., 2006). Recent independent studies also confirm the specific expression of TTBK1 mRNA in neuronal layers of human brain as determined by in situ hybridization (Lund et al., 2013). Immunohistochemistry of human brain with several TTBK1 antibodies produced particularly strong granular staining in the apical and basal dendrites and in deposits in the neuronal cell soma.
Tau-tubulin kinase 1 protein expression is significantly upregulated in AD brains (Sato et al., 2008). Immunohistochemical analysis of AD brains shows that TTBK1 co-localizes with pSer422-positive pre-tangles but not with thioflavin-S-positive NFTs (Lund et al., 2013). pSer422 antibody identifies a rare population of AT8-unlabeled neurons, which scatter throughout the hippocampal formation and the entorhinal cortex. These data suggest that TTBK1 may play a significant role in pre-tangle formation by tau phosphorylation at Ser422 in the entorhinal cortex and hippocampus. This is in line with a previous report claiming that Ser422 becomes phosphorylated earlier in the development of an NFT, preferentially marking intracellular NFTs (
In addition, genetic variations of the TTBK1 gene (SNPs rs2651206, rs10807287, and rs7764257) are associated with late-onset Alzheimer’s disease (LOAD) in two large cohorts of Spanish and Chinese populations (Vazquez-Higuera et al., 2011; Yu et al., 2011), further validating the importance of the TTBK1 gene in the development of tauopathy and AD pathogenesis (
TAU AND TUBULIN PHOSPHORYLATION
Tau-tubulin kinase 1 directly phosphorylates itself, tau and tubulin. Furthermore, we determined the exact human tau 40 (htau40) phosphorylation sites in vitro by phosphopeptide mapping with liquid chromatography and tandem mass-spectrometry (LC/MS/MS; Sato et al., 2006). The htau40 phosphorylation at Tyr197, Ser198, Ser199, Ser202 and Ser422, which have all been reported as phosphorylation sites in PHF-tau (Iqbal et al., 1989; Morishima-Kawashima et al., 1995a, b;
For the crystallography of TTBK1, TTBK1 (1–313) and (14–313) fragments were expressed in E. coli and insect cells, which were found as multi-phosphorylated forms (Xue et al., 2013). To avoid this problem, TTBK1 protein was co-expressed with lambda phosphatase, by which TTBK1 was dephosphorylated and was subsequently co-crystallized with two high-affinity ATP-competitive inhibitors: 3-[(6,7-dimethoxyquinazolin-4-yl)amino]phenol (compound 1) and methyl 2-bromo-5-(7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)benzoate (compound 2). Two positive clusters identified on the surface of TTBK1 indicate putative binding sites for the “primed” substrate, suggesting that TTBK1 favors “primed” pre-phosphorylated substrates. The consensus phosphorylation sites of TTBK1 have not been characterized. Considering the very high homology in the kinase domain of TTBK1 and TTBK2 (Figure 2B), they may share the same consensus phosphorylation sites (S/T-X-Yp) of the substrate. The crystallography shows that compound 1 enters the selectivity pocket, while compound 2 does not reach the selectivity pocket and shows slow binding kinetics as determined by surface plasmon resonance analysis (Xue et al., 2013). The distinct structural-kinetic behavior could be used for the design of selective TTBK1 inhibitors. The other group also just published a crystal structure of TTBK1 (14–343), which was purified from baculovirus-infected sf9 insect cells (Kiefer et al., 2014). They report co-crystalization with compound 3, 3-({5-[(4-amino-4-methylpiperidin-1-yl)methyl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)-5-bromophenol, a TTBK1 inhibitor with IC50 of 170 nM. Due to the structural and sequence similarity of TTBK1 and TTBK2, TTBK1/2 selectivity may be still difficult to achieve.
TTBK1 TRANSGENIC MOUSE STUDY
A TTBK1 transgenic mouse model harbors the entire human TTBK1 genomic DNA, which consists of a CpG island in the 5′ non-coding region, 13 introns and 14 exons, spanning 57 kb in chromosome 6p21.1 (Sato et al., 2008). Transgenic human TTBK1 mRNA is expressed in cerebellum, cortex and spinal cord, and TTBK1 protein is expressed in a similar pattern in TTBK1 transgenic mice (Sato et al., 2008).
Immunohistochemistry of TTBK1 transgenic mice exhibited very specific expression of TTBK1 protein in the perforant path region of subiculum, layer II/III of the entorhinal cortex and the external pyramidal layer of the visual cortex as compared to the age-matched non-Tg mice (Sato et al., 2008). TTBK1 transgenic mice showed strong phospho-neurofilament staining in the entorhinal cortex, visual cortex and subiculum, suggesting neuronal dysfunction in these regions. Enhanced microgliosis was observed in the hippocampus and visual cortex, as well as astrogliosis in the visual cortex of the TTBK1 transgenic mouse brains (Sato et al., 2008).
The most striking phenotype of the TTBK1 transgenic mice is the loss of spatial learning at 9–10 months of age as determined by the 6-arm radial arm water maze test (Sato et al., 2008). TTBK1 transgenic mice showed increased levels of the Cdk5 co-activators p35 and p25; enhanced calpain-1 activity, which cleaves p35 into p25; and enhanced p35-associated Cdk5 activity. Cdk5 and calpain-1 closely regulate the post-synaptic levels of the NMDA receptor (NR) subunits, especially NR2B, and affect hippocampal long-term potentiation and spatial learning (
Collectively, we have developed the following hypothesis in the scheme (Figure 3): inactive μ-calpain forms a stable complex with calpastatin, and TTBK1 may dissociate the complex via direct or indirect phosphorylation of calpastatin, leading to the activation of calpain (Figure 3A). FAA (F-actin and alpha-actinin complex) forms a stable complex with p35 and G-actin is associated with Cdk5, preventing the Cdk5/p35 complex formation in the normal state (Figure 3B). TTBK1 may phosphorylate alpha-actinin, leading to dissociation of p35 from FAA and the formation of the Cdk5/p35 complex via dissociation of Cdk5 from G-actin. The Cdk5/p35 complex serves as scaffolding molecules to generate the NR2B/Cdk5/p35/calpain complex as reported (
FIGURE 3

Hypothetical regulation of μ-calpain activation, Cdk5/p35 complex formation, and NR2B degradation by TTBK1. (A) Inactive μ-calpain forms a stable complex with calpastatin, and TTBK1 dissociates the complex via direct or indirect phosphorylation of either μ-calpain or calpastatin, leading to the activation of μ-calpain. (B) FAA (F-actin and α-actinin complex) forms a stable complex with p35. G-actin is associated with Cdk5. These two statuses prevent the Cdk5/p35 complex formation in the normal state. TTBK1 may phosphorylate α-actinin, leading to dissociation of p35 from FAA and the formation of the Cdk5/p35 complex via dissociation of G-actin from p35. (C) The Cdk5/p35 complex serves as scaffolding molecules to generate the NR2B/Cdk5/p35/μ-calpain complex and mediates the cleavage of the C-terminal region of NR2B. The C-terminus-lacking NR2B fails to be retained in post-synaptic membrane and undergoes endocytic degradation pathway.
TAU/TTBK1 DOUBLE TRANSGENIC MOUSE STUDY
Crossing of TTBK1 transgenic mice with JNPL3 [P301L tau mutant mice (Lewis et al., 2000)] results in enhanced intraneuronal accumulation of phosphorylated tau at multiple sites (AT8, 12E8, PHF-1, and pS422) in cortical and hippocampal regions. Testing of TTBK1/JNPL3 and JNPL3 mice at 5–11 months of age with accelerated rotarod tests demonstrated that TTBK1/JNPL3 mice showed significantly shorter retention time compared to JNPL3 mice as early as 7 months of age (Xu et al., 2010b). We have also detected the significant reduction in forelimb grip strength in TTBK1/JNPL3 mice as compared to JNPL3 littermates starting at 6 months of age, suggesting the sensorimotor or neuromuscular dysfunction in TTBK1/JNPL3 mice. These findings prompted us to examine the neuropathology of motor neurons in the anterior horn of spinal cords at the L4–L5 region. TTBK1/JNPL3 mice also show increased accumulation of oligomeric tau protein in the forebrain and spinal cord, and enhanced reduction in motor neurons in the anterior horn of the lumbar spinal cord, which are associated with neuroinflammation. This suggests that TTBK1 is significantly involved in progression of tauopathy.
TAU AND NEUROINFLAMMAITON
Recent studies demonstrated that neuroinflammation may play a significant role in the pathophysiology of tauopathies (
Neuroinflammation is triggered by the innate immune response, in which mononuclear phagocytes play a major role. When these phagocytes recognize pathogen- or damage-associated molecular pattern molecules (PAMPs and DAMPs), they become “activated,” and this activation can be classified into two phenotypes: classical/pro-inflammatory (M1) and alternative/anti-inflammatory activation (M2;
Our recent study demonstrated that (1) TTBK1 accelerates motor neuron loss in the spinal cord of JNPL3 mice; (2) JNPL3 mice show mostly M2-skewed microglial accumulation in the spinal cord ventral horn, whereas TTBK1/JNPL3 mice show M1-skewed infiltrating monocytes in the same region. These cell can be regognized as CD169+ (sialoadhesin+) cells; (3) TTBK1 upregulation reduces the axonal length, whereas resting microglia enhance neurite extension; and (4) motor neurons are sensitive to neurotoxicity induced by M1-activated microglia, and this is dependent on endogenous TTBK1 gene expression (
FIGURE 4

Scheme of neuroinflammation and neurodegeneration in JNPL3 and TTBK1/JNPL3 mice. In JNPL3 mice, CD11c+ neuroprotective microglia accumulate in the gray matter of the ventral horn, thereby protecting from accelerated neurodegeneration. Conversely, in TTBK1/JNPL3 mice, the cell population is shifted from CD11c+ microglia to M1-skewed infiltrating NOS2+CD169+ monocytes, resulting in enhanced neuroinflammation and accelerated motor neuron loss. Adapted from
SUMMARY
Large efforts have been made to develop inhibitors toward GSK3β and Cdk5 as primary tau kinases (
Statements
Acknowledgments
We would like to thank Drs. Shinji Sato, Satoshi Okuyama, Jixing Xu, Kaitlin Ingraham, Libin Cui, Maya Woodbury, and Hirohide Asai for your work on these studies.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
tau, kinase, Alzheimer’s disease, tauopathy, neuroinflammation, Cdk5, GSK3, SCA11
Citation
Ikezu S and Ikezu T (2014) Tau-tubulin kinase. Front. Mol. Neurosci. 7:33. doi: 10.3389/fnmol.2014.00033
Received
09 March 2014
Accepted
07 April 2014
Published
28 April 2014
Volume
7 - 2014
Edited by
Shin-ichi Hisanaga, Tokyo Metropolitan University, Japan
Reviewed by
Daniele Bottai, University of Milan, Italy; Naruhiko Sahara, National Institute of Radiological Sciences, Japan
Copyright
© 2014 Ikezu and Ikezu.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Tsuneya Ikezu, Department of Pharmacology and Experimental Therapeutics, Boston University School of Medicine, 72 East Concord Street, L-606, Boston, MA 02118, USA e-mail: tikezu@bu.edu
This article was submitted to the journal Frontiers in Molecular Neuroscience.
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