Frontiers in Systems Biology | Integrative Systems Microbiology

Original Research

Published on 15 Jan 2026

A synthetic biology toolkit for rationally designing genetic circuits in Acinetobacter baumannii

in Integrative Systems Microbiology

Sara Letrari
Lisa Faccincani
Stefano Intini
Ilgin Ertan
Tommaso Varaschin
Francesca Galiazzo
Marco Costanzo
Giorgia D’angelo
Valentina Del Giudice
Luca Guarnieri

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1668595

1,633 views

Original Research

Accepted on 23 Dec 2025

Avian caecal microbiome response and resilience to Newcastle disease is dictated by breed background

in Integrative Systems Microbiology

Aqsa Ameer
Farrukh Saleem
Ciara Keating
Farhan Afzal
Hamid Irshad
Khurshid Ahmad
Sadia Sattar
Umer Zeeshan Ijaz
Sundus Javed

Frontiers in Systems Biology

302 views

Correction

Published on 27 Oct 2025

Correction: MicrobiomeKG: bridging microbiome research and host health through knowledge graphs

in Integrative Systems Microbiology

Frontiers Production Office

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1710604

869 views

Original Research

Published on 17 Oct 2025

Dietary composition and fasting regimens differentially impact the gut microbiome and short-chain fatty acid profile in a Pakistani cohort

in Integrative Systems Microbiology

Farzana Gul
Hilde Herrema
Aqsa Ameer
Mark Davids
Arshan Nasir
Konstantinos Gerasimidis
Umer Zeeshan Ijaz
Sundus Javed

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1622753

3,082 views

Brief Research Report

Published on 29 Aug 2025

MicrobiomeKG: bridging microbiome research and host health through knowledge graphs

in Integrative Systems Microbiology

Skye L. Goetz
Amy K. Glen
Gwênlyn Glusman

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1544432

3,419 views
2 citations

Review

Published on 08 Aug 2025

Unraveling the role of mobile genetic elements in antibiotic resistance transmission and defense strategies in bacteria

in Integrative Systems Microbiology

Ranjith Kumavath
Puja Gupta
Eswar Rao Tatta
Mahima S. Mohan
Simi Asma Salim
Siddhardha Busi

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1557413

6,329 views
8 citations

Mini Review

Published on 30 May 2025

Enzyme-displaying spores as a novel strategy for mixed fiber textile recycling

in Integrative Systems Microbiology

Matti Lehmann
Max Herrmann

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1603731

3,094 views

Review

Published on 16 Apr 2025

The role of probiotics, prebiotics, and synbiotics in the treatment of inflammatory bowel diseases: an overview of recent clinical trials

in Integrative Systems Microbiology

Fayez Yassine
Adam Najm
Melhem Bilen

Frontiers in Systems Biology

doi 10.3389/fsysb.2025.1561047

12,620 views
11 citations

Original Research

Published on 14 Aug 2024

First evidence for temperature’s influence on the enrichment, assembly, and activity of polyhydroxyalkanoate-synthesizing mixed microbial communities

in Integrative Systems Microbiology

Anna Trego
Tania Palmeiro-Sánchez
Alison Graham
Umer Zeeshan Ijaz
Vincent O’Flaherty

Frontiers in Systems Biology

doi 10.3389/fsysb.2024.1375472

3,337 views
4 citations

Specialty Grand Challenge

Published on 17 Jun 2024

Specialty grand challenge: how can we use integrative approaches to understand microbial community dynamics?

in Integrative Systems Microbiology

Umer Zeeshan Ijaz
Aqsa Ameer
Farrukh Saleem
Farzana Gul
Ciara Keating
Sundus Javed

Frontiers in Systems Biology

doi 10.3389/fsysb.2024.1432791

3,534 views
5 citations

Original Research

Published on 01 Mar 2024

Assessing electrogenetic activation via a network model of biological signal propagation

in Integrative Systems Microbiology

Kayla Chun
Eric VanArsdale
Elebeoba May
Gregory F. Payne
William E. Bentley

Frontiers in Systems Biology

doi 10.3389/fsysb.2024.1291293

2,907 views
2 citations

Hypothesis and Theory

Published on 05 Dec 2023

The development of an ingestible biosensor for the characterization of gut metabolites related to major depressive disorder: hypothesis and theory

in Integrative Systems Microbiology

Amanda Densil
Mya Elisabeth George
Hala Mahdi
Andrew Chami
Alyssa Mark
Chantal Luo
Yifan Wang
Aribah Ali
Pengpeng Tang
Audrey Yihui Dong

Frontiers in Systems Biology

doi 10.3389/fsysb.2023.1274184

7,749 views
1 citation

12 articles

articles

A synthetic biology toolkit for rationally designing genetic circuits in Acinetobacter baumannii

Avian caecal microbiome response and resilience to Newcastle disease is dictated by breed background

Correction: MicrobiomeKG: bridging microbiome research and host health through knowledge graphs

Dietary composition and fasting regimens differentially impact the gut microbiome and short-chain fatty acid profile in a Pakistani cohort

MicrobiomeKG: bridging microbiome research and host health through knowledge graphs

Unraveling the role of mobile genetic elements in antibiotic resistance transmission and defense strategies in bacteria

Enzyme-displaying spores as a novel strategy for mixed fiber textile recycling

The role of probiotics, prebiotics, and synbiotics in the treatment of inflammatory bowel diseases: an overview of recent clinical trials

First evidence for temperature’s influence on the enrichment, assembly, and activity of polyhydroxyalkanoate-synthesizing mixed microbial communities

Specialty grand challenge: how can we use integrative approaches to understand microbial community dynamics?

Assessing electrogenetic activation via a network model of biological signal propagation

The development of an ingestible biosensor for the characterization of gut metabolites related to major depressive disorder: hypothesis and theory