CASE REPORT article
Sec. Cardiovascular Genetics and Systems Medicine
Volume 7 - 2020 | https://doi.org/10.3389/fcvm.2020.00117
Compound Heterozygous SCN5A Mutations in Severe Sodium Channelopathy With Brugada Syndrome: A Case Report
- 1Center of Medical Genetics, Antwerp University Hospital, University of Antwerp, Antwerp, Belgium
- 2Laboratory of Molecular, Cellular and Network Excitability, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
- 3Department of Paediatric Cardiology, Antwerp University Hospital, Antwerp, Belgium
- 4Department of Invasive Cardiology and Electrophysiology, Ghent University Hospital, Ghent, Belgium
- 5Toxicology and Pharmacology, University of Leuven (KU Leuven), Leuven, Belgium
- 6Department of Cardiology, Antwerp University Hospital, University of Antwerp, Antwerp, Belgium
- 7Department of Human Genetics, Radboud University Medical Centre, Nijmegen, Netherlands
Aims: Brugada syndrome (BrS) is an inherited cardiac arrhythmia with an increased risk for sudden cardiac death (SCD). About 20% of BrS cases are explained by mutations in the SCN5A gene, encoding the main cardiac sodium Nav1.5 channel. Here we present a severe case of cardiac sodium channelopathy with BrS caused by SCN5A compound heterozygous mutations. We performed a genetic analysis of SCN5A in a male proband who collapsed during cycling at the age of 2 years. Because of atrial standstill, he received a pacemaker, and at the age of 3 years, he experienced a collapse anew with left-sided brain stroke. A later ECG taken during a fever unmasked a characteristic BrS type-1 pattern. The functional effect of the detected genetic variants was investigated.
Methods and Results: Next-generation sequencing allowed the detection of two SCN5A variants in trans: c.4813+3_4813+6dupGGGT—a Belgian founder mutation—and c.4711 T>C, p.Phe1571Leu. A familial segregation analysis showed the presence of the founder mutation in the proband's affected father and paternal aunt and the de novo occurrence of the p.Phe1571Leu. The functional effect of the founder mutation was previously described as a loss-of-function. We performed a functional analysis of the p.Phe571Leu variant in HEK293 cells alone or co-expressed with the β1-subunit. Compared to the SCN5A wild type, p.Phe1571Leu displayed a hyperpolarizing shift in the voltage dependence of inactivation (loss-of-function), while the activation parameters were unaffected. Using the peptide toxin nemertide α-1, the variant's loss-of-function effect could be restored due to a toxin-dependent reduction of channel inactivation.
Conclusion: This is the first report providing support for the pathogenicity of the p.Phe1571Leu SCN5A variant which, together with the c.4813+3_4813+6dupGGGT founder mutation, explains the severity of the phenotype of cardiac sodium channelopathy with BrS in the presented case.
Brugada syndrome (BrS) is an inherited cardiac arrhythmia with a significant risk for sudden cardiac death (SCD) and a prevalence of 1:2,000 in the general population (1). The disease is diagnosed based on a specific ECG pattern with distinct ST-segment elevation in the right precordial leads (2, 3). The disorder is predominantly explained by mutations in SCN5A (20–25% of all cases), encoding the α-subunit of the cardiac voltage-gated sodium channel Nav1.5. Currently, over 20 genes encoding other cardiac channels as well as their accessory proteins are linked to BrS (2, 4, 5).
Cardiac action potential generation and conduction velocity in the ventricles rely primarily on the availability of Nav1.5 channels (3, 6), responsible for a fast depolarization of the cardiomyocyte membrane (7, 8). Nav1.5 is a pseudo-tetramer consisting of four repetitive transmembrane domains (DI–IV), containing six transmembrane-spanning segments each (S1–S6), with segments S1–S4 forming the ‘voltage sensing domain (VSD)’. The VSDs of DI to DIII control the channel opening and closure (activation process), whereas the VSD of DIV regulates the channel inactivation (3, 9, 10). An accessory β1-subunit binds covalently to the α-subunit, with variable effects on the activation kinetics (11). BrS is associated with a loss-of-function of Nav1.5, resulting in reduced sodium current (INa), impaired channel kinetics, or trafficking (3–5). Several reports show that heterozygous SCN5A variants cause a BrS phenotype with variable expressivity, ranging from asymptomatic to recurrent arrhythmias and SCD. In addition, they can lead to cardiac conduction disease, sick sinus syndrome, dilated cardiomyopathy, and familial atrial fibrillation or an “overlap syndrome” of these entities, together grouped as cardiac sodium channelopathies. Interestingly, second-hit mutations in genes encoding the auxiliary subunits of Nav1.5 or compound heterozygous mutations in SCN5A tend to cause more severe phenotypes (4–6).
Here we present a patient with a severe phenotype of cardiac sodium channelopathy with BrS phenotype presenting in early childhood due to compound heterozygous SCN5A mutations. One of the variants, c.4813+3_4813+6dupGGGT—a Belgian founder mutation causing cardiac conduction defects and/or BrS in 83% of carriers (Sieliwonczyk et al., under review), segregates in the paternal family. This splice site mutation results in the deletion of 32 amino acids (1,572 to 1,604) in S2 and S3 of DIV of Nav1.5 with a loss-of-function of the channel, which is observed as the absence of sodium current when expressed in human embryonal kidney TSA cells (12, 13). We hypothesize that the second de novo variant, c.4711T>C (p.Phe1571Leu), located in S2 of DIV, aggravates the phenotype in the proband. In this study, we functionally characterize this p.Phe1571Leu variant. We provide evidence for a loss-of-function effect which, in co-occurrence with the Belgian founder mutation, most likely explains the severity of the observed phenotype.
Materials and Methods
Mutation Analysis of SCN5A
Genomic DNA was extracted from whole blood using standard procedures. Genetic testing of SCN5A was performed using an in-house developed cardiac arrhythmia gene panel (14). Sanger sequencing was used to validate the variants and perform familial segregation analysis. This study was carried out in accordance with the recommendations of the Ethics Committee of Antwerp University Hospital. All subjects gave written informed consent in accordance with the Declaration of Helsinki.
Site-Directed Mutagenesis and Transfection of HEK293 Cells
WT human SCN5A cDNA was cloned into the pSP64T plasmid and human SCN1B (the β1-subunit) cDNA into a pRcCMV plasmid. The p.Phe1571Leu variant was introduced in SCN5A using the QuickChange Site-Directed Mutagenesis Kit (Life Technologies) and a primer set that contained the variant (Eurogentec S.A.). The variant SCN5A p.Phe1571Leu plasmid was obtained by amplification in XL2 blue cells (Agilent Technologies) and subsequently purified (purification kit, Macherey-Nagel). The presence of the desired and absence of additional mutation(s) was confirmed by sequencing.
HEK293 cells were transiently transfected with WT SCN5A (expressing Nav1.5) or the p.Phe1571Leu variant (Nav1.5-F1571L) alone or co-expressed in a 1:1 mass ratio with SCN1B using Lipofectamine 2000 (Life Technologies). In every condition, the pEGFP1-N1 plasmid was co-transfected to visualize the transfected cells for electrophysiological analysis. The cells were grown in Dulbecco's Modified Eagle Medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Life Technologies). The cells were placed in a 5% CO2 incubator at 37°C for 48 h prior to the patch-clamp recordings.
Whole-cell patch-clamp recordings were performed at room temperature (20–22°C) using an Axopatch 200B amplifier and a pClamp 10.7/Digidata 1440A acquisition system (Axon Molecular Devices). Patch-pipettes with a resistance between 1 and 1.5 MΩ were pulled from 1.2-mm borosilicate glass capillaries (World Precision Instruments, Inc.) using a P-2000 puller (Sutter Instrument Co.). The pipettes were filled with an intracellular solution containing (in mM): 4 NaCl, 106 KCl, 5 K2ATP, 2 MgCl2, 5 K4BAPTA, and 10 HEPES adjusted to pH 7.2 with KOH. The cells were continuously superfused with a bath solution (ECS) containing (in mM): 145 NaCl, 4 KCl, 5.3 CaCl2, 1 MgCl2, 10 HEPES, and 10 glucose (pH 7.35 with NaOH). For the toxin experiments, the nemertide 1-α synthetic peptide was directly dissolved in ECS at a concentration of 5 μM and applied near the patched cell using a pressurized fast-perfusion system.
INa was recorded by step depolarization for 20 ms to different potentials between −120 and +40 mV, from a holding potential of −130 mV. Current–voltage relations (in pA/pF) were obtained by normalizing the peak INa amplitude to the cell capacitance and plotting these values as a function of the applied potential. Normalized conductance–voltage (G–V) curves were obtained by approximating the linear part of the current–voltage relation with the function to determine the maximal conductance Gmax. Dividing the data points of the current–voltage relation by the calculated maximum current at that voltage, using Gmax, yielded the G–V relation. Activation and inactivation kinetics were determined by fitting the activating part or decay of INa with a single exponential function. The voltage dependence of inactivation was determined by stepping after a 500-ms pre-pulse, ranging from −135 to −30 mV, to a −10-mV test pulse to determine the amount of channel inactivation. The voltage dependence of the inactivation curves were obtained by plotting the normalized INa amplitude upon the test pulse against the corresponding pre-pulse potential. The recovery from inactivation was investigated upon a 500-ms conditioning pre-pulse to induce inactivation. The recovery was determined by stepping after the pre-pulse for variable time to −130 mV, a potential that recovers inactivation, followed by −10 mV pulse to evaluate the INa amplitude, which is a measure for the channels that have recovered. The speed of recovery from inactivation was evaluated by normalizing the INa elicited upon the −10 mV pulse to the maximum INa. These normalized values were plotted as a function of the duration at −130 mV, and this relation was approximated with a single exponential function.
Currents, after passing a 5-kHz low-pass filter, were digitized at a sampling rate of 10 kHz. Recordings were discarded from analysis if the remaining voltage error, originating from series resistance error, exceeded 5 mV after compensation.
To obtain the midpoint potential (V1/2) and the slope factor (Vs) for the voltage dependence of activation and of inactivation, the G–V and voltage dependence of the inactivation curves were fitted with a Boltzmann equation: .
Data are reported as mean ± standard error of mean (SEM) with n as the number of cells analyzed. A comparison between the WT and the variant was performed with two-tailed Student's t-test. A P-value of ≤0.05 indicates statistical significance (Systat Software Inc.).
Case Description and Diagnostic Assessment
Clinical Presentation of Index Patient and Available Family Members
A 20-months-old boy was admitted to a hospital emergency service after his collapse during cycling. Based on the ECG, he was diagnosed with sick sinus syndrome (SSS) with junctional escape (Figure 1B). A DDD-pacemaker was implanted, and during the implantation, the dilated atria were electrically inactive, leading to the diagnosis of atrial standstill. A DNA sample was collected for molecular diagnostics.
Figure 1. (A) Timeline of diagnostic interventions for the described case. ECG traces of (B) the proband on the day of diagnosis with absent atrial activity with junctional escape, (C) repeated during fever at 39°C which unmasked BrS ECG pattern with elevated ST segment, (D) the father carrying the SCN5A founder mutation with absent BrS ECG type-1 pattern after ajmaline challenge, but (E) present during fever at 39°C (visible in lead V1), and (F) the asymptomatic aunt carrying theSCN5A founder mutation with ECG type-1 pattern after ajmaline challenge. (G) Pedigree of the family showing the segregation of the identified variants. Full symbols indicate the affected individuals. The red plus and minus symbols indicate, respectively, the presence or the absence of the variant indicated on the left side of the pedigree.
During recovery, he experienced a collapse anew, caused by a thrombus which led to a left-sided brain stroke. The echocardiography showed left atrial spontaneous echocardiographic contrast but no obvious thrombi. Although during follow-up no ventricular tachyarrhythmias were documented, an ECG taken during fever (39°C) unmasked the characteristic BrS type-1 pattern (Figure 1C), and the boy received an endovascular VVI-ICD as there is a high estimated risk of developing ventricular arrhythmias (timeline: Figure 1A).
The father had a history of syncope at the age of 30. His ajmaline challenge test was negative, but an ECG taken during a fever episode showed a BrS coved-shape ECG pattern (Figures 1D,E). The sister of the father was diagnosed with an ajmaline-induced BrS type-1 ECG pattern (Figure 1F).
Two SCN5A variants were identified in the index patient: c.4813+3_4813+6dupGGGT, a Belgian founder mutation, and c.4711T>C p. (Phe1571Leu). Since both SCN5A variants are separated by only 102 base pairs, we could derive from the sequence reads that they are never located on the same allele (in trans). No other variants of interest were detected with the PED MASTR Plus gene panel. A familial segregation analysis revealed the founder mutation in the proband's father (II:3) and paternal aunt (II:2) and de novo occurrence of the p.Phe1571Leu variant in the index patient (III:1) (Figure 1G).
The founder mutation was previously shown to cause a loss-of-function of the Nav1.5 channel (13) and is classified as a pathogenic variant (15). p.Phe1571Leu is absent from the GnomAD database [gnomad.broadinstitute.org (16)], whereas one carrier is reported in the TOPMED sample collection (dbSNP rs1369632373; nhlbiwgs.org). Phenylalanine at position 1,571 is highly conserved between species (Figure 2A), and in silico prediction on the functional impact of the variant is possibly damaging (MutationTaster, SIFT, PolyPhen; ENST00000413689.5). This initially led to the classification of this variant as a variant of uncertain significance (VUS) (15).
Figure 2. (A) Schematic representation of the Nav1.5 structure (10) with location of the p.Phe1571Leu variant (big full red circle) and p.Arg1632His (small red circle). The alignment shows the conservation of Phe at position 1571 in SCN5A amino acid sequence between species. The accession numbers for the UniProt database are indicated on the left side. (B) Electrophysiological properties of WT Nav1.5 and Nav1.5-F1571L alone or co-expressed with β1. Displayed from left to right are the representative whole-cell ionic current recordings of WT Nav1.5, Nav1.5-F1571L, WT Nav1.5 + β1, and Nav1.5-F1571L + β1. The Na+-selective currents were elicited with the pulse protocol shown on the left above the traces. The horizontal bar at the beginning of the traces indicates zero current level. (C) Current density of WT Nav1.5 (black circles, n = 8), WT Nav1.5 + β1 (gray circles, n = 9), Nav1.5-F1571L (full red inverted triangles, n = 7), and Nav1.5-F1571L + β1 (open red inverted triangles, n = 9) were obtained by normalizing the peak current amplitudes from pulse protocols shown in (B) to the cell capacitance. (D) Voltage dependence of channel activation, G–V curves, are represented for WT Nav1.5, Nav1.5-F1571L, WT Nav1.5 + β1, and Nav1.5-F1571L + β1. (E) The voltage-dependent kinetics of channel activation are shown as means ± SEM.
To determine if this VUS contributes to the severe phenotype observed in our index patient, the Nav1.5 WT and Nav1.5-F1571L variant and combinations with the WT β1-subunit (Nav1.5 + β1 and Nav1.5-F1571L + β1) were expressed in HEK293 cells to assess the functional effect of the variant. The current–voltage (I–V) relationship showed that the current densities for the Nav1.5 and Nav1.5-F1571L, either expressed alone or in presence of β1, did not differ (Figures 2B,C). The activation kinetics as well as the voltage dependence of channel activation (G–V curves) did not show significant differences, yielding a V1/2 of −13.8 ± 1.7 and −14.9 ± 0.9 mV, with slope factors of 14.5 ± 2.4 and 14 ± 1.3 mV for Nav1.5 and Nav1.5-F1571L, respectively (Figures 2D,E). These values did not change significantly in the presence of β1, yielding G–V curves with a V1/2 of −12 ± 0.8 and −14.7 ± 1.1 mV, with slope factors of 16.1 ± 1 and 11.7 ± 1.7 mV for Nav1.5 + β1 and Nav1.5-F1571L + β1, respectively.
We subsequently analyzed the kinetics of inactivation, the voltage dependence of inactivation, and the recovery from inactivation (Figures 3A–E). From the inactivation time constant, we observed a 3-fold slower inactivation (P < 0.001) for the variant (1.96 ± 0.12 ms at 0 mV, n = 7) compared to Nav1.5 WT (0.67 ± 0.08 ms at 0 mV, n = 8) (Figure 3B). Co-expression with β1 did not compensate this slowing, and Nav1.5-F1571L + β1 (2.25 ± 0.16 ms at 0 mV, n = 9) displayed 3.6-fold slower inactivation kinetics compared to WT (0.63 ±0.02 ms at 0 mV, n = 9) (P < 0.001).
Figure 3. Inactivation properties of WT Nav1.5 and Nav1.5-F1571L alone or co-expressed with β1. (A) Displayed from left to right are the representative whole-cell inactivation recordings of WT Nav1.5 + β1 and Nav1.5-F1571L + β1. The INa were elicited with the pulse protocol shown underneath the traces. (B) The time constants of channel inactivation for WT Nav1.5 (black circles, n = 5), WT Nav1.5 + β1 (gray circles, n = 12), Nav1.5-F1571L (full red inverted triangles, n = 9), and Nav1.5-F1571L + β1 (open red inverted triangles, n = 12). The values shown are means ± SEM. (C) Voltage dependence of channel inactivation obtained by plotting the normalized current amplitudes at −10 mV, elicited after 500 ms of conditioning pre-pulse depolarization, as a function of the pre-pulse potential. (D) Displayed from left to right are the representative whole-cell recordings of recovery from inactivation of WT Nav1.5 + β1 and Nav1.5-F1571L + β1. The protocol used is shown underneath the traces. (E) Graph representing the recovery from inactivation, sampled after 500 ms from induction of inactivation.
Interestingly, the Nav1.5-F1571L variant displayed a significant 18-mV hyperpolarizing shift in the voltage dependence of inactivation compared to WT (P = 0.001), yielding inactivation curves with a V1/2 of −104 ± 3 mV (n = 9) and −86 ± 3 mV (n = 5), combined with a slope factor of 7.6 ±0.8 and 5.4 ±0.7 mV for Nav1.5-F1571L and Nav1.5, respectively (Figure 3C). Co-expression with the β1 subunit did not rescue the effect of the variant, and Nav1.5-F1571L + β1 displayed a significant 8.3-mV hyperpolarizing shift compared to Nav1.5 + β1 (P = 0.003), yielding inactivation curves with a V1/2 of −93 ± 2 mV (n = 12) and −84 ± 2 mV (n = 12), combined with a slope factor of 7.2 ± 0.5 and 5.8 ± 0.5 mV, respectively (P = 0.04).
As the onset of inactivation was slowed in the variant, we observed also a slowed recovery from inactivation. The time constants of recovery from inactivation revealed a slower recovery for the variant channel compared to WT (P < 0.001), which was not rescued by co-expression with the β1 subunit (P < 0.001) [Nav1.5: 7.4 ± 0.1 ms (n = 6); Nav1.5-F1571L: 15.2 ± 0.1 ms (n = 12); Nav1.5+ β1: 5.2 ± 0. 2 ms (n = 10); Nav1.5-F1571L + β1: 13 ± 0.1 ms (n = 15)] (Figures 3D,E).
As this patient's severe phenotype seems to be associated with Nav1.5-F1571L displaying a hyperpolarizing shift in the voltage dependence of inactivation, we explored if we could restore the variant's voltage dependence of inactivation toward WT values by drug/toxin addition. The peptide toxin nemertide α-1 seemed to be a good candidate as it was reported to have a decelerating effect on the inactivation process of human sodium channels without influencing the parameters of activation and INa density (17). Two minutes of perfusion of 5 μM of nemertide α-1 induced a steady-state modification of INa inactivation of both Nav1.5 + β1 and the variant p.F1571L + β1 (Figure 4A). Upon this nemertide α-1 addition, we observed a 16-fold slowing in the inactivation kinetics of Nav1.5+ β1; at 0 mV, the time constant of inactivation slowed from 0.47 ± 0.04 ms in the absence of nemertide α-1 to 7.62 ± 1.18 ms with nemertide α-1 (n = 6; P = 0.0002). The variant Nav1.5-F1571L + β1 also reported a significant 3-fold slowing of inactivation (P = 0.002) displaying at 0 mV a time constant of 2.22 ± 0.57 ms in the absence of nemertide α-1 and 5.82 ± 0.68 ms in its presence (n = 6) (Figure 4B). Next, we investigated the voltage dependence of inactivation and observed no significant changes in the V1/2 upon toxin addition for both Nav1.5+β1 and Nav1.5-F1571L+ β1 (P > 0.5). In contrast, the slope factors became significantly shallower and amounted, after toxin modification, to 10.6 ± 0.8 mV (n = 6) and 12.3 ± 1.3 mV (n = 6) for Nav1.5 + β1 and Nav1.5-F1571L + β1, respectively (Figures 4C,D). Due to the shallower slope, the amount of Nav1.5-F1571L + β1 channel inactivation is reduced at the physiological relevant resting membrane potential (i.e., around −85 mV) upon nemertide α-1 addition.
Figure 4. Inactivation properties of WT Nav1.5 + β1 and Nav1.5-F1571L +β1 in the presence of nemertide α-1. (A) Displayed from left to right are the representative whole-cell recordings of WT Nav1.5 + β1 and Nav1.5-F1571L + β1 in control conditions (black tracings) and upon steady-state modification by 5 μM nemertide α-1 (red tracings). The currents were elicited with the pulse protocol shown underneath the traces. Steady-state toxin modulation was achieved after ~2 min. (B) Kinetics of channel inactivation for WT Nav1.5 + β1 (circles) and Nav1.5-F1571L + β1 (inverted triangles) in control conditions (black) and upon steady-state modification by nemertide α-1 (red) are shown. The values are means ± SEM. (C) The voltage dependence of channel inactivation for WT Nav1.5 + β1 (black symbols) and Nav1.5-F1571L + β1 (red) in control conditions (circles) and upon steady-state modification by nemertide α-1 (inverted triangles) is shown. (D) Scaled-up view of the voltage dependence of channel inactivation in the physiological range of resting membrane potentials, with a focus on the comparison to the WT Nav1.5 + β1. Note that, in the presence of nemertide α-1, the amount of inactivated Nav1.5-F1571L + β1 channels (red inverted triangles) is similar to the WT in control conditions (black circles).
BrS is rarely observed in the pediatric population (18–20), and only 4.3% of symptomatic patients experience their first malignant ventricular arrhythmic event before the age of 16 years (21). Single heterozygous loss-of-function variants in SCN5A can cause BrS, cardiac conduction disease, sick sinus syndrome, dilated cardiomyopathy, and familial atrial fibrillation or manifest as an ‘overlap syndrome’ of these entities (22). When SCN5A is affected by two compound variants, this can result in a significant aggravation of the disease severity and/or earlier disease onset (5, 23–26). This was also observed in our proband who experienced his first syncope during physical activity at around the age of 2 years, probably caused by brady-arrhythmia in the setting of atrial standstill. Most of the similarly published patients presented with sinus node dysfunction (5, 23, 24, 26). Only Sacilotto et al. reported a patient presenting initially with atrial flutter and recurrent syncopes without spontaneous ventricular arrhythmia and who, similarly to our case, presented a spontaneous BrS type-1 ECG pattern during follow-up (24). Clinical interventions mostly encompass the implantation of a pacemaker (5, 23, 24, 26), with additional low-dose aspirin (24) or oral quinidine (23), and single patient received β-blockers without pacemaker implantation (25).
In the presented family, heterozygous carriers of the SCN5A Belgian founder mutation showed characteristic BrS type-1 ECG pattern either after sodium channel blocker challenge (II:2) or during fever conditions (II:3) but presented no symptoms (II:2) or syncope at the age of 30 years (II:3). The proband's second variant, p.Phe1571Leu, is a missense variant that we functionally modeled in HEK293 cells. Our experiments showed that p.Phe1571Leu does not affect current density, voltage dependence of channel activation, or activation kinetics (Figures 2C–E). However, it did impair the inactivation properties, as could be expected from the localization of the variant in the VSD of DIV, which is known to regulate channel inactivation (9). On the one hand, the variant slows down inactivation (Figure 3B), which would suggest a gain-of-function of the variant. This effect would rather be predicted to lead to a long-QT syndrome type 3 phenotype (4) but, on the other hand, the voltage dependence of inactivation of p.Phe1571Leu displays a significant hyperpolarizing shift (Figure 3C) which, in physiological conditions, results in a reduction of over 40% in the availability of Nav1.5 channels at rest (i.e., at −85 mV). The significantly slowed recovery of the mutant channel (Figure 3E) further reduces the availability of the remaining channels, exacerbating the effect. This combination obviously leads to a loss-of-function of INa, explaining the (aggravated) phenotype of cardiac sodium channelopathy with BrS in the patient.
Interestingly, an almost identical electrophysiological effect was reported for the SCN5A p.Arg1632His (R1632H) variant (5, 26), located in DIV S4 (Figure 2A) in proximity to p.Phe1571Leu. Slower inactivation kinetics, delayed recovery from inactivation, and a hyperpolarizing shift in voltage dependence of inactivation of similar magnitude (20.7 mV) as we observed (18 mV) were described (26). The heterozygous carriers of this variant had no symptoms, SSS, ajmalin-induced BrS (5), or first-degree AV block (25), while the compound heterozygous carriers (with second SCN5A variant) presented with early-onset SSS (5, 25). This supports the likely pathogenicity of the p.Phe1571Leu variant characterized in this study and its causal role in aggravating the phenotype of the presented case.
Also interesting is that another missense variant at the same amino acid location, p.Phe1571Cys, has been reported in a Brugada syndrome patient (27), but no functional analysis was performed. Although the resulting amino acid change is different, this could be supportive of our findings as well.
Our experiments with the toxin nemertide α-1 showed that the WT channels were responding as expected as inactivation kinetics were slowed down. However, no depolarizing shift in the voltage dependence of inactivation was observed for the WT Nav1.5+β1 as was observed for Nav1.5 expressed in Xenopus laevis oocytes (16). This might be because of a different cell type and/or the addition of the β1-subunit, which seems to protect the cells from fluctuations in the voltage dependence of inactivation. Nevertheless, toxin addition resulted in a shallower voltage dependence of inactivation (i.e., larger slope factor value) such that the amount of inactivated Nav1.5-F1571L channels is reduced at the physiological resting membrane potential (Figures 4C,D). In the presence of toxin, the amount of available non-inactivated Nav1.5-F1571L + β1 channels rises from 18% without toxin to ~36% (at −85 mV), which is similar to the amount of available WT Nav1.5 + β1 channels. To our knowledge, this is the first report in which the use of a sodium channel activator toxin is proposed as a potential remedy for the pathogenic effect of a SCN5A variant.
Based on these functional experiments, we conclude that the described p.Phe1571Leu variant is likely pathogenic (15) and, in the presented case, its de novo occurrence, together with the SCN5A Belgian founder mutation, explains the severe phenotype of cardiac sodium channelopathy with BrS.
Data Availability Statement
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://www.ncbi.nlm.nih.gov/, SCV001190331 https://www.ncbi.nlm.nih.gov/, SCV001190333.
The studies involving human participants were reviewed and approved by Ethics Committee of the Antwerp University Hospital. Written informed consent to participate in this study was provided by the participants' legal guardian/next of kin. Written informed consent was obtained from the individual(s), and minor(s)' legal guardian/next of kin, for the publication of any potentially identifiable images or data included in this article.
AN, AL, BL, and MA designed and planned the experimental framework. AN performed the experiments. AN, AL, and MA wrote the manuscript with critical input from all the authors. AN analyzed the data under the supervision of AL. JT and SP advised and provided the toxin for the functional experiments. HD, WD, EV, LV, and JS provided the clinical data of the index patient and family members.
This research was supported by funding from the University of Antwerp (GOA) and the Research Foundation—Flanders (FWO, Belgium, G.0356.17). BL and EV are senior clinical investigators of the FWO. BL holds a consolidator grant from the European Research Council (Genomia—ERC-COG-2017-771945). AN, ESim, and ESie hold Ph.D. fellowships of the FWO (1S24317N, 1S25318N, and 1192019N). DSc was supported by a post-doctoral fellowship of the FWO (grant number 12R5610N). JT was funded by GOC2319N and GOA4919N (FWO Vlaanderen) and CELSA/17/047 (BOF, KU Leuven). SP was a post-doctoral fellow supported by KU Leuven funding (PDM/19/164).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
We wish to thank the patient, the family members, and the staff from all units that participated in the study.
5. Robyns T, Van Casteren L, Corveleyn A, De Ravel T, Heidbuchel H, Willems R. Reduced penetrance and variable expression of SCN5A mutations and the importance of co-inherited genetic variants: case report and review of the literature. Indian Pacing Electrophysiol J. (2014) 14:133–49. doi: 10.1016/S0972-6292(16)30754-9
8. Medeiros-Domingo A, Iturralde Torres P, Tester DJ, Luna TT, Makielski JC, Ackerman MJ. Unique mixed phenotype and unexpected functional effect revealed by novel compound heterozygosity mutations involving SCN5A. Heart Rhythm. (2009) 6:1170–5. doi: 10.1016/j.hrthm.2009.04.034
9. Detta N, Salvatore F. The multi-faced aspects of the complex cardiac Nav1.5 protein in membrane function and pathophysiology. Biochim Biophys Acta. (2015) 1854:1502–9. doi: 10.1016/j.bbapap.2015.07.009
12. Rossenbacker T, Schollen E, Kuiperi C, de Ravel TJL, Devriendt K, Matthijs G, et al. Unconventional intronic splice site mutation in SCN5A associates with cardiac sodium channelopathy. J Med Genet. (2005) 42:e29. doi: 10.1136/jmg.2004.029058
13. Hong K, Pollevick GD, Dumaine R, de Zutter M, Burashnikov E, Wu YS, et al. Cryptic 5' splice site activation in SCN5A associated with Brugada syndrome. J Mol Cell Cardiol. (2005) 38:555–60. doi: 10.1016/j.yjmcc.2004.10.015
14. Proost D, Vanderweyer G, Rotthier A, Alaerts M, Van Craenenbroeck EM, Van Crombruggen J, et al. Targeted next-generation sequencing of 51 genes involved in primary electrical disease. J Mol Diagn. (2017) 19:445–59. doi: 10.1016/j.jmoldx.2017.01.010
15. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. ACMG Laboratory Quality Assurance Committee, Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. (2015) 17:405–24. doi: 10.1038/gim.2015.30
16. Karczewski LC, Francioli G, Tiao BB, Cummings J, Alföldi Q, Wang RL, et al. Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes. bioRxiv. (2019) 531210. doi: 10.1038/s41586-020-2308-7
17. Jacobsson E, Strand M, Peigneur S, Eriksson C, Loden H, Shariatgorji M, et al. Peptide ion channel toxins from the bootlace worm, the longest animal on Earth. Nat Sci Rep. (2017) 8:4596. doi: 10.1038/s41598-018-22305-w
18. Conte S, Dewals W, Sieira J, de Asmundis C, Ciconte G, Chierchia GB, et al. Drug-induced Brugada syndrome in children: clinical features, device-based management, and long-term follow-up. J Am Coll Cardiol. (2014) 63:2272–9. doi: 10.1016/j.jacc.2014.02.574
19. Andorin A, Behr ER, Denjoy I, Crotti L, Dagradi F, Jesel L, et al. Impact of clinical and genetic findings on the management of young patients with Brugada syndrome. Heart Rhythm. (2016) 13:1274–82. doi: 10.1016/j.hrthm.2016.02.013
20. Gonzalez Corcia MC, Sieira J, Sarkozy A, de Asmundis C, Chierchia GB, Hernandez Ojeda J, et al. Brugada syndrome in the young: an assessment of risk factors predicting future events. Europace. (2017) 19:1864–73. doi: 10.1093/europace/euw206
21. Milman A, Andorin A, Gourraud JB, Sacher F, Mabo P, Kim SH, et al. Age of first arrhythmic event in Brugada syndrome: data from the SABRUS (survey on arrhythmic events in Brugada syndrome) in 678 patients. Circ Arrhythm Electrophysiol. (2017) 10:e005222. doi: 10.1161/CIRCEP.117.005222
23. Sacilotto L, Darrieux FC, Wulkan F, Oliveira TG, Hachul DT, Pereira AD, et al. Compound heterozygous SCN5A mutations in a toddler–are they associated with a more severe phenotype? Arq Bras Cardiol. (2017) 108:70–3. doi: 10.5935/abc.20170006
24. Baskar S, Clements D, Mayuga KA, Aziz PF. Compound heterozygous mutations in the SCN5A-encoded Nav1.5 cardiac sodium channel resulting in atrial standstill and His-Purkinje system disease. J Pediatr. (2014) 165:1050. doi: 10.1016/j.jpeds.2014.07.036
25. Bezzina CR, Groenewegen WA, Herfst LJ, van der Wal AC, Lam J, Jongsma HJ, et al. Compound heterozygosity for mutations (W156X and R225W) in SCN5A associated with severe cardiac conduction disturbances and degenerative changes in the conduction system. Circ Res. (2003) 92:159–68. doi: 10.1161/01.RES.0000052672.97759.36
26. Benson DW, Dyment M, Knilans TK, Fish FA, Strieper MJ, Rhodes TH, et al. Congenital sick sinus syndrome caused by recessive mutations in the cardiac sodium channel gene (SCN5A). J Clin Invest. (2003) 112:1019–28. doi: 10.1172/JCI200318062
27. Kapplinger JD, Tester DJ, Alders M, Benito B, Berthet M, Brugada J, et al. An international compendium of mutations in SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm. (2010) 7:33–46. doi: 10.1016/j.hrthm.2009.09.069
Keywords: Brugada syndrome, cardiac arrhythmia, SCN5A, case report, compound heterozygosity
Citation: Nijak A, Labro AJ, De Wilde H, Dewals W, Peigneur S, Tytgat J, Snyders D, Sieliwonczyk E, Simons E, Van Craenenbroeck E, Schepers D, Van Laer L, Saenen J, Loeys B and Alaerts M (2020) Compound Heterozygous SCN5A Mutations in Severe Sodium Channelopathy With Brugada Syndrome: A Case Report. Front. Cardiovasc. Med. 7:117. doi: 10.3389/fcvm.2020.00117
Received: 03 April 2020; Accepted: 04 June 2020;
Published: 24 July 2020.
Edited by:Valeria Novelli, Catholic University of the Sacred Heart, Italy
Reviewed by:Marina Cerrone, New York University School of Medicine, United States
Oscar Campuzano, Hospital Clínic de Barcelona, Spain
Minoru Horie, Shiga University of Medical Science, Japan
Copyright © 2020 Nijak, Labro, De Wilde, Dewals, Peigneur, Tytgat, Snyders, Sieliwonczyk, Simons, Van Craenenbroeck, Schepers, Van Laer, Saenen, Loeys and Alaerts. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Maaike Alaerts, firstname.lastname@example.org
†These authors share last authorship