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ORIGINAL RESEARCH article

Front. Bioinform.

Sec. Integrative Bioinformatics

Boolean network and meshless simulations for the comparison of transport and reaction mechanisms arising in one-short tri-exponential and uniform infusion electro-chemotherapeutic treatments

Provisionally accepted
FabiΓ‘n Mauricio  VΓ©lez SalazarFabiΓ‘n Mauricio VΓ©lez Salazar1*IvΓ‘n  David PatiΓ±o ArcilaIvΓ‘n David PatiΓ±o Arcila1Ismael  E. Rivera MadridIsmael E. Rivera Madrid1Marlon  R. FullaMarlon R. Fulla2
  • 1InstituciΓ³n Universitaria Pascual Bravo, MedellΓ­n, Colombia
  • 2Universidad Nacional de Colombia - Sede Medellin, MedellΓ­n, Colombia

The final, formatted version of the article will be published soon.

Drug administration via bloodstream involves some transport and reaction mechanisms (𝑅𝑇𝑀𝑠), such as extravasation, perfusion along blood vessels, transmembrane and interstitial transport, protein dissociation and association and lymphatic drainage. These 𝑅𝑇𝑀𝑠 can be influenced by the type of pharmacokinetic profile (𝑃𝐾) used for drug delivery in the circulatory system, as well as by the bloodstream velocity (πœ†π‘–π‘›π‘™). In electroporated tissues, the electric field magnitude (𝐸) can also affect the 𝑅𝑇𝑀𝑠 since it brings about vessel vasoconstriction, cell membrane and vessel wall electro-permeabilization, and change in tissue porosity. In the present work, in-house computational tools are employed to examine how the combination between 𝐸 and πœ†π‘–π‘›π‘™ influences on the 𝑅𝑇𝑀′𝑠 existence, interaction and rates arising in electrochemotherapy for two different 𝑃𝐾′𝑠: One-short, Tri-exponential (𝑇𝑃𝐾) where drug concentration decreases exponentially after one-short infusion, and Uniform (π‘ˆπ‘ƒπΎ) where drug concentration is kept constant during the whole treatment. Firstly, the ratios between extracellular, free intracellular and bound intracellular concentrations are obtained from numerical simulations with a meshless code formerly developed, calibrated and validated. Subsequently, the interaction between the 𝑅𝑇𝑀𝑠 is investigated by means of a Boolean model presented here that is based on the comparison of the spatio-temporal evolution of the concentration ratios. Several combinations of 𝐸 (0 π‘˜π‘‰/π‘š, 46 π‘˜π‘‰/π‘š, 70 π‘˜π‘‰/π‘š), πœ†π‘–π‘›π‘™ (1 Γ— 10βˆ’4π‘š/𝑠, 1 Γ— 10βˆ’3π‘š/𝑠, 1 Γ— 10βˆ’2π‘š/𝑠) and 𝑃𝐾 (𝑇𝑃𝐾 and π‘ˆπ‘ƒπΎ) are tested. The in silico findings indicate that 𝑅𝑇𝑀′𝑠 existence, interaction and rates can vary between the two 𝑃𝐾′𝑠 (𝑇𝑃𝐾 and π‘ˆπ‘ƒπΎ) for a specific permutation of 𝐸 and πœ†π‘–π‘›π‘™. Nevertheless, common features are identified between these pharmacokinetic profiles. In general, the lower 𝐸, the more uniform the transmembrane transport in the radial and axial direction; the decrease of πœ†π‘–π‘›π‘™ also improves the radial homogeneity of this transport mechanism but negatively influences the axial uniformity. The uniformity of the mechanisms of association and dissociation is only altered monotonously by 𝐸 [1].

Keywords: Boolean modelling, Electroporation, infusion, Meshless techniques, Tri-exponential - one-short, uniform infusion

Received: 09 Oct 2025; Accepted: 19 Jan 2026.

Copyright: Β© 2026 VΓ©lez Salazar, PatiΓ±o Arcila, Rivera Madrid and Fulla. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: FabiΓ‘n Mauricio VΓ©lez Salazar

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