Frontiers in Bioinformatics

Original Research

Published on 27 Jul 2023

3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism

in Integrative Bioinformatics

Ryan S. McClure
Yvonne Rericha
Katrina M. Waters
Robyn L. Tanguay

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1234218

2,731 views
2 citations

Perspective

Published on 27 Jul 2023

Current successes and remaining challenges in protein function prediction

in Protein Bioinformatics

Constance J. Jeffery

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1222182

4,787 views
16 citations

Original Research

Published on 27 Jul 2023

Optimal ranking and directional signature classification using the integral strategy of multi-objective optimization-based association rule mining of multi-omics data

in Integrative Bioinformatics

Saurav Mallik
Soumita Seth
Amalendu Si
Tapas Bhadra
Zhongming Zhao

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1182176

1,724 views
1 citation

Perspective

Published on 26 Jul 2023

Digital staining facilitates biomedical microscopy

in Computational BioImaging

Michael John Fanous
Nir Pillar
Aydogan Ozcan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1243663

3,168 views
6 citations

Review

Published on 26 Jul 2023

A review on deep learning applications in highly multiplexed tissue imaging data analysis

in Computational BioImaging

Mohammed Zidane
Ahmad Makky
Matthias Bruhns
Alexander Rochwarger
Sepideh Babaei
Manfred Claassen
Christian M. Schürch

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1159381

7,587 views
17 citations

Perspective

Published on 25 Jul 2023

Moving beyond the desktop: prospects for practical bioimage analysis via the web

in Computational BioImaging

Wei Ouyang
Kevin W. Eliceiri
Beth A. Cimini

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1233748

2,871 views
7 citations

Editorial

Published on 19 Jul 2023

Editorial: Expert Opinions in Network bioinformatics: 2022

in Network Bioinformatics

Paola Lecca

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1254668

1,038 views

Methods

Published on 14 Jul 2023

CardIAP: calcium transients confocal image analysis tool

in Computational BioImaging

Ana Julia Velez Rueda
Luis Alberto Gonano
Agustín García Smith
Gustavo Parisi
María Silvina Fornasari
Leandro Matías Sommese

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1137815

2,732 views
2 citations

Perspective

Published on 14 Jul 2023

Machine learning enhanced cell tracking

in Computational BioImaging

Christopher J. Soelistyo
Kristina Ulicna
Alan R. Lowe

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1228989

5,629 views
9 citations

Mini Review

Published on 13 Jul 2023

Geometric deep learning as a potential tool for antimicrobial peptide prediction

in Drug Discovery in Bioinformatics

Fabiano C. Fernandes
Marlon H. Cardoso
Abel Gil-Ley
Lívia V. Luchi
Maria G. L. da Silva
Maria L. R. Macedo
Cesar de la Fuente-Nunez
Octavio L. Franco

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1216362

6,404 views
23 citations

Original Research

Published on 12 Jul 2023

Visualization of automatically combined disease maps and pathway diagrams for rare diseases

in Data Visualization

Piotr Gawron
David Hoksza
Janet Piñero
Maria Peña-Chilet
Marina Esteban-Medina
Jose Luis Fernandez-Rueda
Vincenza Colonna
Ewa Smula
Laurent Heirendt
François Ancien

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1101505

2,714 views
3 citations

Original Research

Published on 05 Jul 2023

Translating theory into practice: assessing the privacy implications of concept-based explanations for biomedical AI

in Integrative Bioinformatics

Adriano Lucieri
Andreas Dengel
Sheraz Ahmed

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1194993

2,404 views
5 citations

Editorial

Published on 04 Jul 2023

Editorial: Bioinformatics in the age of data science: algorithms, methods, and tools applied from Omics to structural data

in Integrative Bioinformatics

Diego Mariano
Neli José Da Fonseca Júnior
Lucianna Helene Santos
Raquel Cardoso de Melo-Minardi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1246859

1,325 views

Original Research

Published on 29 Jun 2023

Comparison of phasor analysis and biexponential decay curve fitting of autofluorescence lifetime imaging data for machine learning prediction of cellular phenotypes

in Computational BioImaging

Linghao Hu
Blanche Ter Hofstede
Dhavan Sharma
Feng Zhao
Alex J. Walsh

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1210157

2,689 views
4 citations

Methods

Published on 22 Jun 2023

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance

in Network Bioinformatics

Alexander Mazein
Marcio Luis Acencio
Irina Balaur
Adrien Rougny
Danielle Welter
Anna Niarakis
Diana Ramirez Ardila
Ugur Dogrusoz
Piotr Gawron
Venkata Satagopam

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1197310

3,107 views
9 citations

Original Research

Published on 20 Jun 2023

Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode

in Protein Bioinformatics

Nour Nissan
Julia Hooker
Eric Arezza
Kevin Dick
Ashkan Golshani
Benjamin Mimee
Elroy Cober
James Green
Bahram Samanfar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1199675

2,228 views
2 citations