Frontiers in Bioinformatics | Computational BioImaging

Methods

Published on 27 Jan 2022

Singularity Containers Improve Reproducibility and Ease of Use in Computational Image Analysis Workflows

in Computational BioImaging

Shilpita Mitra-Behura
Reto Paul Fiolka
Stephan Daetwyler

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.757291

3,403 views
8 citations

Correction

Published on 25 Jan 2022

Corrigendum: Spatiotemporal Clustering of Repeated Super-Resolution Localizations via Linear Assignment Problem

in Computational BioImaging

David J. Schodt
Keith A. Lidke

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.836606

874 views

Opinion

Published on 15 Dec 2021

A Tribute to Professor Katharina Gaus

in Computational BioImaging

Marek Cebecauer

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.801115

1,448 views

Original Research

Published on 19 Nov 2021

Advanced Data Analysis for Fluorescence-Lifetime Single-Molecule Localization Microscopy

in Computational BioImaging

Jan Christoph Thiele
Oleksii Nevskyi
Dominic A. Helmerich
Markus Sauer
Jörg Enderlein

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.740281

5,184 views
11 citations

Technology and Code

Published on 08 Nov 2021

Integrated Cells and Collagen Fibers Spatial Image Analysis

in Computational BioImaging

Georgii Vasiukov
Tatiana Novitskaya
Maria-Fernanda Senosain
Alex Camai
Anna Menshikh
Pierre Massion
Andries Zijlstra
Sergey Novitskiy

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.758775

6,828 views
5 citations

Methods

Published on 04 Nov 2021

Efficient Cross-Correlation Filtering of One- and Two-Color Single Molecule Localization Microscopy Data

in Computational BioImaging

Angel Mancebo
Dushyant Mehra
Chiranjib Banerjee
Do-Hyung Kim
Elias M. Puchner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.739769

3,661 views
7 citations

Methods

Published on 28 Oct 2021

3D Structure From 2D Microscopy Images Using Deep Learning

in Computational BioImaging

Benjamin Blundell
Christian Sieben
Suliana Manley
Ed Rosten
QueeLim Ch’ng
Susan Cox

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.740342

10,184 views
5 citations

Original Research

Published on 26 Oct 2021

Automated Machine-Learning Framework Integrating Histopathological and Radiological Information for Predicting IDH1 Mutation Status in Glioma

in Computational BioImaging

Dingqian Wang
Cuicui Liu
Xiuying Wang
Xuejun Liu
Chuanjin Lan
Peng Zhao
William C. Cho
Manuel B. Graeber
Yingchao Liu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.718697

3,758 views
4 citations

Original Research

Published on 26 Oct 2021

Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance

in Computational BioImaging

HoChan Cheon
Andrey Kan
Giulio Prevedello
Simone C. Oostindie
Simon J. Dovedi
Edwin D. Hawkins
Julia M. Marchingo
Susanne Heinzel
Ken R. Duffy
Philip D. Hodgkin

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.723337

4,295 views
13 citations

Original Research

Published on 20 Oct 2021

Spatiotemporal Clustering of Repeated Super-Resolution Localizations via Linear Assignment Problem

in Computational BioImaging

David J. Schodt
Keith A. Lidke

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.724325

2,156 views
5 citations

Original Research

Published on 18 Oct 2021

K-Neighbourhood Analysis: A Method for Understanding SMLM Images as Compositions of Local Neighbourhoods

in Computational BioImaging

Kristen Feher
Matthew S. Graus
Simao Coelho
Megan V. Farrell
Jesse Goyette
Katharina Gaus

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.724127

2,568 views

Original Research

Published on 15 Oct 2021

Fourier Ring Correlation and Anisotropic Kernel Density Estimation Improve Deep Learning Based SMLM Reconstruction of Microtubules

in Computational BioImaging

Andreas Berberich
Andreas Kurz
Sebastian Reinhard
Torsten Johann Paul
Paul Ray Burd
Markus Sauer
Philip Kollmannsberger

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.752788

4,257 views
3 citations

Technology and Code

Published on 11 Oct 2021

An Efficient GUI-Based Clustering Software for Simulation and Bayesian Cluster Analysis of Single-Molecule Localization Microscopy Data

in Computational BioImaging

Saskia Kutz
Ando C. Zehrer
Roman Svetlitckii
Gülce S. Gülcüler Balta
Lucrezia Galli
Susanne Kleber
Jakob Rentsch
Ana Martin-Villalba
Helge Ewers

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.723915

3,063 views

Perspective

Published on 11 Oct 2021

U-Hack Med Gap Year—A Virtual Undergraduate Internship Program in Computer-Assisted Healthcare and Biomedical Research

in Computational BioImaging

Stephan Daetwyler
Hanieh Mazloom-Farsibaf
Gaudenz Danuser
Rebekah Craig

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.727066

3,290 views
4 citations

Original Research

Published on 10 Sep 2021

NOBIAS: Analyzing Anomalous Diffusion in Single-Molecule Tracks With Nonparametric Bayesian Inference

in Computational BioImaging

Ziyuan Chen
Laurent Geffroy
Julie S. Biteen

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.742073

6,450 views
19 citations

Opinion

Published on 23 Apr 2021

Early Requirement for Bioinformatics in Undergraduate Biology Curricula

in Computational BioImaging

Matthew G. Niepielko
Maria Shumskaya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.656531

3,913 views
2 citations