Frontiers in Bioinformatics

Original Research

Published on 08 Jun 2021

Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cancer

Max A. Verbiest
Matteo Delucchi
Tugce Bilgin Sonay
Maria Anisimova

doi 10.3389/fbinf.2021.685844

3,984 views
2 citations

Original Research

Published on 21 May 2021

A General Framework to Learn Tertiary Structure for Protein Sequence Characterization

Mu Gao
Jeffrey Skolnick

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.689960

5,414 views
4 citations

Original Research

Published on 29 Apr 2021

Predicting Anticancer Drug Response With Deep Learning Constrained by Signaling Pathways

Heming Zhang
Yixin Chen
Fuhai Li

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.639349

14,686 views
48 citations

Brief Research Report

Published on 27 Apr 2021

Data Driven Cell Cycle Model to Quantify the Efficacy of Cancer Therapeutics Targeting Specific Cell-Cycle Phases From Flow Cytometry Results

David W. James
Andrew Filby
M. Rowan Brown
Huw D. Summers
Lewis W. Francis
Paul Rees

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.662210

4,065 views

Opinion

Published on 23 Apr 2021

Early Requirement for Bioinformatics in Undergraduate Biology Curricula

Matthew G. Niepielko
Maria Shumskaya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.656531

4,570 views
4 citations

Methods

Published on 13 Apr 2021

Deriving and Using Descriptors of Elementary Functions in Rational Protein Design

Melvin Yin
Alexander Goncearenco
Igor N. Berezovsky

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.657529

5,107 views
5 citations

Original Research

Published on 09 Apr 2021

OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins

Ahmed F. Roumia
Konstantinos D. Tsirigos
Margarita C. Theodoropoulou
Ioannis A. Tamposis
Stavros J. Hamodrakas
Pantelis G. Bagos

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.646581

6,694 views
14 citations

Brief Research Report

Published on 01 Apr 2021

Summary Visualizations of Gene Ontology Terms With GO-Figure!

Maarten J. M. F. Reijnders
Robert M. Waterhouse

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.638255

68,153 views
117 citations

Specialty Grand Challenge

Published on 29 Mar 2021

Toward Characterising the Cellular 3D-Proteome

Arne Elofsson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.598878

2,541 views
5 citations

Methods

Published on 29 Mar 2021

CellPAINT: Turnkey Illustration of Molecular Cell Biology

Adam Gardner
Ludovic Autin
Daniel Fuentes
Martina Maritan
Benjamin A. Barad
Michaela Medina
Arthur J. Olson
Danielle A. Grotjahn
David S. Goodsell

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.660936

22,658 views
22 citations

Methods

Published on 25 Mar 2021

Computational Identification of Functional Centers in Complex Proteins: A Step-by-Step Guide With Examples

Wei Zhou
Wei Chi
Wanting Shen
Wanying Dou
Junyi Wang
Xuechen Tian
Christoph Gehring
Aloysius Wong

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.652286

5,531 views
17 citations

Technology and Code

Published on 18 Mar 2021

AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy

Sébastien Tosi
Anna Lladó
Lídia Bardia
Elena Rebollo
Anna Godo
Petra Stockinger
Julien Colombelli

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.627626

8,021 views
16 citations

Original Research

Published on 19 Feb 2021

Sampling SARS-CoV-2 Proteomes for Predicted CD8 T-Cell Epitopes as a Tool for Understanding Immunogenic Breadth and Rational Vaccine Design

Jonathan Hare
David Morrison
Morten Nielsen

Frontiers in Bioinformatics

doi 10.3389/fbinf.2021.622992

3,056 views
6 citations

85 Publications

volumes

Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cancer

A General Framework to Learn Tertiary Structure for Protein Sequence Characterization

Predicting Anticancer Drug Response With Deep Learning Constrained by Signaling Pathways

Data Driven Cell Cycle Model to Quantify the Efficacy of Cancer Therapeutics Targeting Specific Cell-Cycle Phases From Flow Cytometry Results

Early Requirement for Bioinformatics in Undergraduate Biology Curricula

Deriving and Using Descriptors of Elementary Functions in Rational Protein Design

OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins

Summary Visualizations of Gene Ontology Terms With GO-Figure!

Toward Characterising the Cellular 3D-Proteome

CellPAINT: Turnkey Illustration of Molecular Cell Biology

Computational Identification of Functional Centers in Complex Proteins: A Step-by-Step Guide With Examples

AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy

Sampling SARS-CoV-2 Proteomes for Predicted CD8 T-Cell Epitopes as a Tool for Understanding Immunogenic Breadth and Rational Vaccine Design