Frontiers in Genetics

Methods

Published on 24 Apr 2025

MSI expresso: a software for determining MSI status and detecting MSI-related transcription events from RNA sequencing data

in Computational Genomics

Emmanuel Tubacher
Alexandre How-Kit
Mourad Sahbatou
Alex Duval
Victor Renault
Jean-François Deleuze

Frontiers in Genetics

doi 10.3389/fgene.2025.1523278

237 views

Original Research

Accepted on 23 Apr 2025

Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima

in Genomics of Plants and the Phytoecosystem

Kelly DeWeese
Gary Molano
Sara Calhoun
Anna Lipzen
Jerry Jenkins
Melissa Williams
Christopher Plott
Jayson Talag
Jane Grimwood
Jean-Luc Jannink

Frontiers in Genetics

doi 10.3389/fgene.2025.1494480

110 views

Original Research

Accepted on 23 Apr 2025

RNA hybrid-capture next-generation sequencing has high sensitivity in identifying known and less characterized oncogenic and likely oncogenic NTRK fusions in a real-world standard-of-care setting

in Cancer Genetics and Oncogenomics

Zachary D Wallen
Marni Tierno
Erica Schnettler
Alison Roos
Michelle Green
Kobina Amoah
Rebecca A Previs
Stephanie Hastings
Sarabjot Pabla
Taylor J Jensen

Frontiers in Genetics

doi 10.3389/fgene.2025.1550706

Technology and Code

Accepted on 23 Apr 2025

TCGADownloadHelper: Simplifying TCGA Data Extraction and Preprocessing

in Computational Genomics

Alexandra Anke Baumann
Markus Wolfien
Olaf Wolkenhauer

Frontiers in Genetics

doi 10.3389/fgene.2025.1569290

Original Research

Accepted on 23 Apr 2025

Evaluating the Therapeutic Potential of BSA-Reduced Mussel-Derived Selenium Nanoparticles to Mitigate Copper Sulfate-Induced Hepatic Damage and Neurodegeneration in Zebrafish Model

in Statistical Genetics and Methodology

Suganiya Umapathy
Ieshita Pan

Frontiers in Genetics

doi 10.3389/fgene.2025.1522370

Review

Accepted on 23 Apr 2025

In vitro 3D modeling of colorectal cancer: the pivotal role of the extracellular matrix, stroma and immune modulation

in Cancer Genetics and Oncogenomics

Veroniaina Hanitrarimalala
Zdenka Prgomet
My Hedhammar
Helena Tassidis
Anette Gjörloff Wingren

Frontiers in Genetics

doi 10.3389/fgene.2025.1545017

Original Research

Published on 23 Apr 2025

Complete mitochondrial genome of Ficus hirta and its comparative analysis

in Genomics of Plants and the Phytoecosystem

Wangdong Deng
Xinyi Cai

Frontiers in Genetics

doi 10.3389/fgene.2025.1530105

325 views

Editorial

Published on 23 Apr 2025

Editorial: Impact of heavy metal on aquatic life and human health

in Toxicogenomics

Ahmed H. El-Sappah
Heba H. Abdel-Kader
Manzar Abbas
Sara Zafar
Jia Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1608524

182 views

Original Research

Accepted on 22 Apr 2025

Unveiling the Molecular Landscape of δ-thalassemia and δ-globin variants in Southern China: Novel Mutations, gene spectrum, and Implications for Thalassemia Diagnosis

in Genetics of Common and Rare Diseases

Youqiong Li
Lihua Ye
Liang Liang
Lihong Zheng
Yongjun Xiao
Zhongchan Lao
Jinping Bai
Xi He
Qixun Fang
Ting Qin

Frontiers in Genetics

doi 10.3389/fgene.2025.1584310

Original Research

Accepted on 22 Apr 2025

Identification of Candidate Genes Harboring Pathogenic Variants in Congenital Heart Disease and Laterality Defects in Chinese population

in Genetics of Common and Rare Diseases

Jinxin Wang
Weicheng Chen
Xianghui Huang
Han Gao
Zhiyu Feng
Chaozhong Tan
Quannan Zhuang
YUAN GAO
Shaojie Min
Yuquan Lu

Frontiers in Genetics

doi 10.3389/fgene.2025.1582718

Original Research

Accepted on 22 Apr 2025

Clinical Features and Genetic Analysis of a Family with t(5;9)(p15;p24) Balanced Translocation Leading to Cri-du-chat Syndrome in Offspring

in Genetics of Common and Rare Diseases

Jing Zhao
Ping Chen
Yijia Ren
Shurong Li
Weiyi Zhang
Yan Li
Fengyu Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1550937

Original Research

Accepted on 22 Apr 2025

Clinical Impact of Pharmacogenomics in Pediatric Care: Insights Extracted from Clinical Exome Sequencing

in Pharmacogenetics and Pharmacogenomics

Simran D S Maggo
Yachen Pan
Dejerianne Ostrow
Jenny Nguyen
Jaclyn A Biegel
Matthew A Deardorff
Xiaowu Gai

Frontiers in Genetics

doi 10.3389/fgene.2025.1574325

Original Research

Accepted on 22 Apr 2025

Genetic Architecture of Thermotolerance Traits in Beef Cattle: A Novel Integration of SNP and Breed-of-Origin Effects

in Livestock Genomics

Gabriel Antonio Zayas
Camila Santos Rojas
Aakilah S Hernandez
Eduardo Rodriguez
Kaitlyn Sarlo Davila
Ashley M Beard
Fahad Rafiq
Raluca Mateescu

Frontiers in Genetics

doi 10.3389/fgene.2025.1576966

Original Research

Accepted on 22 Apr 2025

Long-read sequencing reveals absence of 5mC in Ogataea parapolymorpha DL-1 genome and introduces telomere-to-telomere assembly

in Computational Genomics

Andrey Andreevich Eremin
Alexander Sergeev
Arthur T. Kopylov
Vladimir Rodin
Daniil Malyshev
Tatiana Panova
Igor Polyakov
Maria Zvereva

Frontiers in Genetics

doi 10.3389/fgene.2025.1574332

Case Report

Published on 22 Apr 2025

Case report: a case of hypoparathyroidism–sensorineural deafness–renal dysplasia syndrome

in Genetics of Common and Rare Diseases

Jinyan Yang
Yanjie Mei
Feifei Tang
Xinhong Guo
Yanhua Kong
Ying Deng

Frontiers in Genetics

doi 10.3389/fgene.2025.1501427

228 views

Review

Published on 22 Apr 2025

Regulatory mechanisms of m6A RNA methylation in esophageal cancer: a comprehensive review

in RNA

Long Wen
Jiang Fu
Zixu Wang
Rangping Xie
Shengjie Tang
Li Yu
Haining Zhou

Frontiers in Genetics

doi 10.3389/fgene.2025.1561799

257 views