Frontiers in Genetics | Computational Genomics

Original Research

Published on 31 Aug 2023

Gene network inference from single-cell omics data and domain knowledge for constructing COVID-19-specific ICAM1-associated pathways

in Computational Genomics

Mitsuhiro Odaka
Morgan Magnin
Katsumi Inoue

Frontiers in Genetics

doi 10.3389/fgene.2023.1250545

2,706 views
1 citation

Brief Research Report

Published on 31 Aug 2023

Prediction of distinct populations of innate lymphoid cells by transcriptional profiles

in Computational Genomics

Haiyao Dong
Zhenguang Du
Haoming Ma
Zhicheng Zhou
Haitao Yang
Zhenyuan Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1227452

1,727 views

Original Research

Published on 29 Aug 2023

A meta-analysis of microarray datasets to identify biological regulatory networks in Alzheimer’s disease

in Computational Genomics

Kimia Sadat Hashemi
Mohadese Koohi Aliabadi
Arian Mehrara
Elham Talebi
Ali Akbar Hemmati
Radin Dabbagh Rezaeiye
Mohammad Javad Ghanbary
Maryam Motealleh
Behnaz Dayeri
Shayan Khalili Alashti

Frontiers in Genetics

doi 10.3389/fgene.2023.1225196

5,031 views
7 citations

Technology and Code

Published on 24 Aug 2023

EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison

in Computational Genomics

Sandy Ingrid Aguiar Alves
Victor Benedito Costa Ferreira
Carlos Willian Dias Dantas
Artur Luiz da Costa da Silva
Rommel Thiago Jucá Ramos

Frontiers in Genetics

doi 10.3389/fgene.2023.1228552

4,514 views
5 citations

Original Research

Published on 24 Aug 2023

An efficient convolutional neural network-based diagnosis system for citrus fruit diseases

in Computational Genomics

Zhangcai Huang
Xiaoxiao Jiang
Shaodong Huang
Sheng Qin
Su Yang

Frontiers in Genetics

doi 10.3389/fgene.2023.1253934

2,681 views
8 citations

Original Research

Published on 23 Aug 2023

PSF toolkit: an R package for pathway curation and topology-aware analysis

in Computational Genomics

Siras Hakobyan
Ani Stepanyan
Lilit Nersisyan
Hans Binder
Arsen Arakelyan

Frontiers in Genetics

doi 10.3389/fgene.2023.1264656

4,034 views
4 citations

Original Research

Published on 21 Aug 2023

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning

in Computational Genomics

Nur Sebnem Ersoz
Burcu Bakir-Gungor
Malik Yousef

Frontiers in Genetics

doi 10.3389/fgene.2023.1139082

4,767 views
12 citations

Original Research

Published on 21 Aug 2023

Identification and verification of novel immune-related ferroptosis signature with excellent prognostic predictive and clinical guidance value in hepatocellular carcinoma

in Computational Genomics

Wenxiu Jiang
Lili Wang
Yajuan Zhang
Hongliang Li

Frontiers in Genetics

doi 10.3389/fgene.2023.1112744

1,790 views

Brief Research Report

Published on 21 Aug 2023

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning

in Computational Genomics

Hong Ju
Jie Bai
Jing Jiang
Yusheng Che
Xin Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1254827

1,765 views
2 citations

Technology and Code

Published on 17 Aug 2023

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction

in Computational Genomics

Alexander Freudenberg
Jeremie Vandenplas
Martin Schlather
Torsten Pook
Ross Evans
Jan Ten Napel

Frontiers in Genetics

doi 10.3389/fgene.2023.1220408

2,476 views
1 citation

Original Research

Published on 16 Aug 2023

Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

in Computational Genomics

Xiaoxi Zhang
Seungjun Ahn
Peihua Qiu
Somnath Datta

Frontiers in Genetics

doi 10.3389/fgene.2023.1235927

2,109 views

Methods

Published on 10 Aug 2023

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs

in Computational Genomics

Lisa Fiedler
Martin Middendorf
Matthias Bernt

Frontiers in Genetics

doi 10.3389/fgene.2023.1250907

4,666 views
2 citations

Perspective

Published on 10 Aug 2023

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

in Computational Genomics

Verónica Latapiat
Mauricio Saez
Inti Pedroso
Alberto J. M. Martin

Frontiers in Genetics

doi 10.3389/fgene.2023.1209416

3,418 views
5 citations

Original Research

Published on 09 Aug 2023

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh

in Computational Genomics

Mohammad Tanbir Habib
Saikt Rahman
Mokibul Hassan Afrad
Arif Mahmud Howlader
Manjur Hossain Khan
Farhana Khanam
Ahmed Nawsher Alam
Emran Kabir Chowdhury
Ziaur Rahman
Mustafizur Rahman

Frontiers in Genetics

doi 10.3389/fgene.2023.1220906

3,784 views
3 citations

Methods

Published on 08 Aug 2023

iLncDA-RSN: identification of lncRNA-disease associations based on reliable similarity networks

in Computational Genomics

Yahan Li
Mingrui Zhang
Junliang Shang
Feng Li
Qianqian Ren
Jin-Xing Liu

Frontiers in Genetics

doi 10.3389/fgene.2023.1249171

1,338 views

Editorial

Published on 04 Aug 2023

Editorial: Deep learning for disease prediction in next-generation sequencing and biomedical imaging data

in Computational Genomics

Saurav Mallik
Junichi Iwata
Ruifeng Hu
Tapas Si

Frontiers in Genetics

doi 10.3389/fgene.2023.1260940

1,877 views