Frontiers in Microbiomes

Systematic Review

Published on 16 May 2025

The role of gut microbiota in autoimmune disease progression and therapy: a comprehensive synthesis

in Host and Microbe Associations

Mohammad Adawi

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1553243

5,343 views
1 citation

Brief Research Report

Published on 15 May 2025

Comparative analysis of Illumina, PacBio, and nanopore for 16S rRNA gene sequencing of rabbit’s gut microbiota

in Omics and Bioinformatics for Microbiomes

Iliyass Biada
María Antonia Santacreu
Oscar González-Recio
Noelia Ibáñez-Escriche

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1587712

6,539 views
3 citations

Editorial

Published on 07 May 2025

Editorial: Interactions between natural and built environment microbiomes in a One Health context

in Environmental Microbiomes

Weitao Shuai
Bridget Hegarty
Alexander Mahnert
Erica Marie Hartmann

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1608228

1,352 views

Original Research

Published on 30 Apr 2025

Stability of oral and fecal microbiome at room temperature: impact on diversity

in Host and Microbe Associations

Blanca Rius-Sansalvador
David Bars-Cortina
Olfat Khannous-Lleiffe
Ainhoa Garcia-Serrano
Elisabet Guinó
Ester Saus
Toni Gabaldón
Victor Moreno
Mireia Obón-Santacana

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1334775

2,067 views
1 citation

Original Research

Published on 30 Apr 2025

Farm conditions shape microbial communities and their association with methane intensity in dairy cattle: insights from the rumen microbiome at the community level

in Environmental Microbiomes

Simon Roques
Lisanne Koning
Alex Bossers
Sanne van Gastelen
Dirkjan Schokker
Edoardo Zaccaria
Léon Šebek
Soumya K. Kar

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1540197

1,638 views

Mini Review

Published on 28 Apr 2025

Insights into human respiratory microbiome under dysbiosis and its analysis tool

in Host and Microbe Associations

Mehfooz Helal
Vinay Kumar Bari

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1549166

2,044 views

Editorial

Published on 24 Apr 2025

Editorial: Ecology, evolution, and biodiversity of microbiomes and viromes from extreme environments

in Environmental Microbiomes

Gareth Trubl
Lucie Malard
Janina Rahlff

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1604002

1,551 views

Original Research

Published on 22 Apr 2025

Optimisation of cutaneous microbiota sampling methodology

in Host and Microbe Associations

Dario Leonardo Balacco
Ajoy Bardhan
Hadeer Ibrahim
Sarah A. Kuehne
Melissa M. Grant
Josefine Hirschfeld
Adrian H. M. Heagerty
Iain L. Chapple

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1559981

2,476 views

Original Research

Published on 09 Apr 2025

Relationships between rumen methanogens and fungal communities and their response to changes in alfalfa forms and starch in sheep diets

in Host and Microbe Associations

Wenliang Guo
Meila Na
Shuwei Liu
Kenan Li
Haidong Du
Jing Zhang
Yu Zhang
Renhua Na
Yulan Liu

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1567462

1,456 views
2 citations

Original Research

Published on 09 Apr 2025

Effects of wetting events on mass timber surface microbial communities and VOC emissions: implications for building operation and occupant well-being

in Environmental Microbiomes

Gwynne Á. Mhuireach
Susan Collins
Leslie Dietz
Patrick Finn Horve
Aurélie Laguerre
Dale Northcutt
Jason Stenson
Kevin Van Den Wymelenberg
Elliott Gall
Mark Fretz

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1395519

3,479 views

Review

Published on 20 Mar 2025

Intestinal dysbiosis during pregnancy and microbiota-associated impairments in offspring

in Nutrition, Metabolism and the Microbiome

Yaa Abu
Sabita Roy

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1548650

4,278 views
8 citations

Original Research

Published on 10 Mar 2025

The effects of different dietary nutritional levels on meat quality, rumen microbiota, and muscle metabolomics in Tibetan Plateau yaks

in Nutrition, Metabolism and the Microbiome

Shengchun Xu
Shuxiang Wang
Jiyuan Zhang
Xun Wang
Yingkui Yang
Shengsheng Li
Yang Xiang
Hongxin Nie
Yuming Li
Ziming Zeng

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1545689

1,715 views
1 citation

Systematic Review

Published on 06 Mar 2025

Gut microbiota and type 2 diabetes associations: a meta-analysis of 16S studies and their methodological challenges

in Nutrition, Metabolism and the Microbiome

Jésica Lígia Picanço Machado
Ana Paula Schaan
Izabela Mamede
Gabriel Rocha Fernandes

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1506387

3,192 views
3 citations

Brief Research Report

Published on 05 Mar 2025

Probiotic supplementation prevents stress-impaired spatial learning and enhances the effects of environmental enrichment

in Nutrition, Metabolism and the Microbiome

Cassandra M. Flynn
Lara M. Blackburn
Qi Yuan

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1454909

2,358 views
1 citation

Review

Published on 03 Mar 2025

Postbiotics and their biotherapeutic potential for chronic disease and their feature perspective: a review

in Nutrition, Metabolism and the Microbiome

Zerihun Asefa
Abera Belay
Eyuel Welelaw
Meseret Haile

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1489339

7,446 views
16 citations

Original Research

Published on 18 Feb 2025

Unveiling host-genetic drivers of caecal microbial communities in chickens through genome-wide association studies

in Host and Microbe Associations

Ankit Hinsu
Xiaoxia Dai
Christos Dadousis
Melanie Hay
Bruno Fosso
Matteo Crotta
Ramesh Pandit
Javier Guitian
Fiona Tomley
Prakash Koringa

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1539923

2,434 views

Original Research

Published on 07 Feb 2025

Microbial partner (MiPner) analysis

in Environmental Microbiomes

Jeffrey L. Bennetzen
Josue Fernandez-Canela
Vienna Elmgreen
Shaugnessy R. McCann
Mary E. Norris
Xiangyu Deng
Philip Brailey-Crane

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1500798

1,364 views

Original Research

Published on 06 Feb 2025

Biochar and straw amendments drive microbial regulation of phosphorus dynamics in saline-irrigated cotton fields

in Environmental Microbiomes

Yang Ye
Xiaowen Guo
Yueyao Li
Wei Min
Huijuan Guo

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1508717

1,744 views
2 citations

Original Research

Published on 04 Feb 2025

A multi-strain human skin microbiome model provides a testbed for disease modeling

in Host and Microbe Associations

Angela L. Maloney
Tyler Crawford
Jordan Hurlbut
Monica Martinez
Thomas J. Mulhern
Elizabeth L. Wiellette
Else M. Vedula
Vidhya Vijayakumar

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1473292

4,741 views
1 citation

Original Research

Published on 31 Jan 2025

Soil microbiome composition is highly responsive to precipitation and plant composition manipulations in a field biodiversity experiment

in Environmental Microbiomes

Haley M. Burrill
Susan M. Magnoli
James D. Bever

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1460319

2,962 views
2 citations

Editorial

Published on 24 Jan 2025

Editorial: Women in environmental microbiomes

in Environmental Microbiomes

Rebecca C. Mueller
Catherine A. Gehring

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1537069

1,560 views

Original Research

Published on 21 Jan 2025

Metagenomic analysis of goat feces from Ogliastra (Sardinia, Italy)

in Nutrition, Metabolism and the Microbiome

Monica Rosaria Molotzu
Piera Angela Cabras
Lisa Di Marcantonio
Rossano Atzeni
Nicolò Pietro Paolo Macciotta
Antonella Canu

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1474497

2,136 views

Original Research

Published on 20 Jan 2025

Microbial community differentiation in vent chimneys of the Lost City Hydrothermal Field reflects habitat heterogeneity

in Environmental Microbiomes

Osama M. Alian
William J. Brazelton
Karmina A. Aquino
Katrina I. Twing
H. Lizethe Pendleton
Gretchen Früh-Green
Susan Q. Lang
Matthew O. Schrenk

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1401831

2,666 views

Original Research

Published on 20 Jan 2025

Staphylococcus aureus carriage is associated with microbiome composition in the nares and oropharynx, not the hand, of monozygotic twins

in Host and Microbe Associations

Mark R. Dalman
W. Brian Simison
Danny Nielsen
Sabana Bhatta
Noor Ramahi
Clair Yee
Dipendra Thapaliya
Jhalka Kadariya
Shanice Cheatham
Hailee Olson

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1457940

1,980 views

213 articles

articles

The role of gut microbiota in autoimmune disease progression and therapy: a comprehensive synthesis

Comparative analysis of Illumina, PacBio, and nanopore for 16S rRNA gene sequencing of rabbit’s gut microbiota

Editorial: Interactions between natural and built environment microbiomes in a One Health context

Stability of oral and fecal microbiome at room temperature: impact on diversity

Farm conditions shape microbial communities and their association with methane intensity in dairy cattle: insights from the rumen microbiome at the community level

Insights into human respiratory microbiome under dysbiosis and its analysis tool

Editorial: Ecology, evolution, and biodiversity of microbiomes and viromes from extreme environments

Optimisation of cutaneous microbiota sampling methodology

Relationships between rumen methanogens and fungal communities and their response to changes in alfalfa forms and starch in sheep diets

Effects of wetting events on mass timber surface microbial communities and VOC emissions: implications for building operation and occupant well-being

Intestinal dysbiosis during pregnancy and microbiota-associated impairments in offspring

The effects of different dietary nutritional levels on meat quality, rumen microbiota, and muscle metabolomics in Tibetan Plateau yaks

Gut microbiota and type 2 diabetes associations: a meta-analysis of 16S studies and their methodological challenges

Probiotic supplementation prevents stress-impaired spatial learning and enhances the effects of environmental enrichment

Postbiotics and their biotherapeutic potential for chronic disease and their feature perspective: a review

Unveiling host-genetic drivers of caecal microbial communities in chickens through genome-wide association studies

Microbial partner (MiPner) analysis

Biochar and straw amendments drive microbial regulation of phosphorus dynamics in saline-irrigated cotton fields

A multi-strain human skin microbiome model provides a testbed for disease modeling

Soil microbiome composition is highly responsive to precipitation and plant composition manipulations in a field biodiversity experiment

Editorial: Women in environmental microbiomes

Metagenomic analysis of goat feces from Ogliastra (Sardinia, Italy)

Microbial community differentiation in vent chimneys of the Lost City Hydrothermal Field reflects habitat heterogeneity

Staphylococcus aureus carriage is associated with microbiome composition in the nares and oropharynx, not the hand, of monozygotic twins