Abstract
Long non-coding RNAs (lncRNAs) are crucial regulatory molecules that participate in numerous cellular development processes, and they have gathered much interest recently. HOXA10 antisense RNA (HOXA10-AS, also known as HOXA-AS4) is a novel lncRNA that was identified to be dysregulated in some prevalent malignancies. In this review, the clinical significance of HOXA10-AS for the prognosis of various cancers is analyzed. In addition, the major advances in our understanding of the cellular biological functions and mechanisms of HOXA10-AS in different human cancers are summarized. These cancers include esophageal carcinoma (ESCA), gastric cancer (GC), glioma, laryngeal squamous cell carcinoma (LSCC), acute myeloid leukemia (AML), lung adenocarcinoma (LUAD), nasopharyngeal carcinoma (NPC), oral squamous cell carcinoma (OSCC), and pancreatic cancer. We also note that the aberrant expression of HOXA10-AS promotes malignant progression through various underlying mechanisms. In conclusion, HOXA10-AS is expected to serve as an ideal clinical biomarker and an effective cancer therapy target.
1 Introduction
Cancer has high incidence and fatality rate, and is steadily overtaking stroke and coronary heart disease as the primary cause of human mortality. There were approximately 9.7 million cancer deaths and 20.0 million new cases worldwide in 2022, according to the most recent global data (). Escalating cancer incidence and fatality rates emphasize the need for innovative methods to detect, improve prognoses, and provide precision therapies.
Several non-coding RNAs have recently been shown to be involved in various tumors, and have been used as clinical biomarkers and therapeutic targets. These RNAs include long non-coding RNAs (lncRNAs). LncRNAs are RNA types that do not encode proteins and are longer than 200 nucleotides (nt) in length. They are primarily found in the nucleus and cytoplasm (). LncRNAs affect transcription, mRNA turnover, and translation. These functions are primarily achieved through changes in their relative stability and interactions with nucleic acids or RNA-binding proteins (RBPs) in the cis or trans forms (). Cancer initiation and progression have been linked to lncRNAs, and they can affect cancer cell differentiation, epithelial-mesenchymal transition (EMT), energy metabolism, oxidative stress, autophagy, chemoresistance, and immunity (; ; ; ; ). Notably, lncRNAs have shown potential as diagnosis and prognosis indicators, as well as therapeutic cancer targets (; ; ; ; ).
Among these lncRNAs, HOXA10 antisense RNA (HOXA10-AS, also known as HOXA-AS4) has garnered attention as a novel antisense lncRNA due to its aberrant expression observed in human malignancies (; ; ; ; ; ; ; ; ; ). HOXA10-AS is transcribed from the reverse strand of human chromosome 7q15.2 (Figure 1A) at coordinates 27168899 to 27171915, spans three exons, and has a length of 3,017 nt (source: https://www.ncbi.nlm.nih.gov/gene/100874323). HOXA10-AS originates from the antisense strand of HOXA10 and shares this genomic location with miR-196b and HOXA10 (Figure 1B). HOXA10 is highly expressed in gastric cancer (GC) and has increased cell proliferation and EMT (). A low expression of miR-196b has been shown to effect human choriocarcinoma cell proliferation, migration, and invasion (). This association indicates that HOXA10-AS could play a potential role in tumor onset and progression. An increasing amount of research has also shown that HOXA10-AS is highly expressed in most tumor cells and tissues. Further research has demonstrated that HOXA10-AS also plays a regulatory role in signaling pathways (; ; ; ; ). HOXA10-AS has the potential to function as a biomarker for diagnosis and prognosis, and could be a therapeutic cancer target.
FIGURE 1
In this review, we systematically searched PubMed, the Web of Science, and Google Scholar for articles related to HOXA10-AS to summarize the biological functions and molecular mechanisms of HOXA10-AS in cancer. The online databases were also used to analyze the HOXA10-AS differential expression in pan-cancer and the diagnostic and prognostic value of HOXA10-AS in different human cancers.
2 HOXA10-AS gene expressions in human cancers
Numerous studies have reported on the aberrant expression of the lncRNA HOXA10-AS in many human cancers. These cancers include GC (
TABLE 1
| Tumor type | Expression | Model | Clinical Characteristics | Survival indicator | Biomarker | Ref. | ||
|---|---|---|---|---|---|---|---|---|
| Tissue | Cell line | Main subcellular location | ||||||
| Esophageal carcinoma | Upregulated | UALCAN | TE-1, Eca-109, Kyse-150 | Cytoplasm (Eca-109) | — | — | — | |
| Gastric cancer | Upregulated | Human tissues, ENCORI | SNU-1, AGS, HGC-27 | — | — | OS | Prognostic | |
| Glioma | Upregulated | Human tissues | A172, U251 | — | Malignancy grade | — | Prognostic | |
| TCGA | G797, G432 | — | Malignancy grade | OS | ||||
| TCGA | — | — | — | OS | ||||
| KMT2A-rearrangede acute myeloid leukemia | Upregulated | Human tissues, TCGA | EOL-1, MOLM-13, MV4-11, NOMO, THP-1, SHI-1, ML-2 | Cytoplasm (EOL, MOLM-13, MV4-11, NB-4) | — | OS | Prognostic | |
| Lung adenocarcinoma | Upregulated | Human tissues, TCGA | A549, H1299, H1975, PC9, SPC-A1 | — | — | OS | Prognostic | |
| Laryngeal squamous cell carcinoma | Upregulated | Human tissues, TCGA | AMC-HN-8, TU686, TU212 | — | — | OS | Prognostic | |
| Nasopharyngeal carcinoma | Upregulated | GEPIA | C666-1, 5-8F, SUNE-1 | Cytoplasm (C666-1, SUNE-1) | — | — | — | |
| Oral squamous cell carcinoma | Upregulated | Human tissues | Tca8113 | — | TNM stage | OS | Prognostic | |
| Human tissues, TCGA | SAS, SCC25 | — | — | OS | Prognostic | |||
| TCGA | CAL27, SCC9 | — | — | OS | Prognostic | |||
| Pancreatic cancer | Upregulated | TCGA | BxPC-3, SW 1990, PANC-1, CFPAC-1, AsPC-1, T3M4 | — | — | OS | Prognostic | |
Expression of HOXA10-AS and its relationship with clinical characteristics and survival in human cancersa.
OS, overall survival; TNM, stage, tumor node metastasis stage; Ref, reference.
The HOXA10-AS expression in pan-cancers was then more thoroughly explored by analyzing the interactive bodymap and the HOXA10-AS RNA transcript expression levels in pan-cancers using GEPIA2 (http://gepia2.cancer-pku.cn/) (
FIGURE 2

Expression profile of HOXA10-AS across all tumor and normal human tissues as obtained using the GEPIA two database. The median expression of HOXA10-AS in tumor and normal samples is shown in an interactive bodymap (A). A thorough profile of gene expression is presented in the form of dot plot (B), and each dots represent expression of samples.
The HOXA10-AS expression between tumor and normal tissues was then comprehensively compared, and we also assessed the HOXA10-AS expression profile in 33 cancer types using the University of Santa Cruz (UCSC) Xena website (https://xenabrowser.net/datapages/) (
FIGURE 3

Relative expression level of HOXA10-AS in different cancers based on the UCSC Xena datasets. Not significant (ns), *p < 0.05, **p < 0.01, ***p < 0.001.
3 The HOXA10-AS clinical significance in cancers
HOXA10-AS has the potential to serve as a novel predictive biomarker, and its expression has been associated with several clinical features of many cancers (Table 1). The HOXA10-AS expression level is related to clinicopathological features. For instance, the HOXA10-AS expression in tumor tissues was shown to be positively correlated with tumor node metastasis stages (
The prognostic significance of HOXA10-AS in various other cancers was then further explored. The UCSC Xena datasets were extensively evaluated to elucidate the relationship between HOXA10-AS expression and prognostic indicators that included the overall survival (OS), the disease-specific survival (DSS), the disease-free interval (DFI), and the progression free interval (PFI) (Figure 4). Upregulated HOXA10-AS levels indicated worse OS, DSS, and PFI in mesothelioma and LGG, shorter OS, DSS, DFI, and PFI in LUAD, worse OS in LAML and shorter OS and PFI in ACC, and better DFI in UCEC and PFI in SKCM.
FIGURE 4

Forest plots showing the relationship between HOXA10-AS and OS/DSS/DFI/PFI in pan-cancer using the UCSC Xena datasets.
A receiver operating characteristic (ROC) curve analysis was also performed. The results showed that HOXA10-AS has potential diagnostic value in some cancer types (Figure 5A), particularly in ESCA, HNSC, STAD, and THYM, in which the area under the curve (AUC) exceeded 0.9 (Figure 5B). These results demonstrated that HOXA10-AS can be used as a potential diagnostic and prognostic biomarker in a wide range of tumors.
FIGURE 5

Diagnostic ROC curves of (A) HOXA10-AS expression for differentiating cancer from normal tissues, and (B) HOXA10-AS expression in ESCA, HNSC, STAD and THYM cancer types, which have a stronger diagnostic value when using the UCSC Xena datasets.
4 HOXA10-AS biological functions and regulatory mechanisms in various tumors
HOXA10-AS has been reported to involved in the regulation of biological functions that include cell proliferation, apoptosis, ferroptosis, monocytic differentiation, migration, invasion, metastasis, EMT, stemness, tumor growth, and oxidative resistance. All of these factors impact cancer onset and progression (Table 2; Figure 6). Recent studies have investigated the functional roles of HOXA10-AS in many cancer types such as ESCA, GC, glioma, AML, LUAD, LSCC, NPC, OSCC, and pancreatic cancer. The HOXA10-AS regulatory mechanisms in these cancers are shown in Figure 7.
TABLE 2
| Cancer type | Role | Experiment | Function | Action Mechanism of HOXA10-AS | Related Molecule/Signal | Ref. |
|---|---|---|---|---|---|---|
| Esophageal carcinoma | Oncogenic | In vitro | Promotes cells proliferation, migration, and invasion; inhibits cell apoptosis | Interaction with protein | FMR1, HOXA10, CHDH | |
| Gastric cancer | Oncogenic | In vitro and in vivo | Promotes cell proliferation, migration, invasion, and tumor growth; inhibits cell apoptosis | As a ceRNA | miR-6509-5p, YBX1 | |
| Glioma | Oncogenic | In vitro | Promotes cell proliferation; inhibits cell apoptosis | RNA–RNA interaction | HOXA10 | |
| In vitro and in vivo | Promotes cell proliferation and invasion | — | ERK, MEK, YAP/TAZ; MAPK pathway; Hippo pathway | |||
| KMT2A-rearrangede acute myeloid leukemia | Oncogenic | In vitro and in vivo | Promotes cell proliferation and leukemic growth; inhibits cell apoptosis and monocytic differentiation | — | P65; NF-κB pathway | |
| Lung adenocarcinoma | Oncogenic | In vitro | Promotes cell proliferation, migration, and EMT; inhibits cell apoptosis | — | ELK1; Wnt/β-catenin pathway | |
| Laryngeal squamous cell carcinoma | Oncogenic | In vitro and in vivo | Promotes cell proliferation and activates oxidative resistance of cancer cells; inhibits cell apoptosis and ferroptosis | As a ceRNA | miR-296-3p, ITGA6, TRIM25, RBPJ, Keap1, Nrf2; Notch pathway | |
| Nasopharyngeal carcinoma | Oncogenic | In vitro | Promotes cell proliferation and migration | As a ceRNA | E2F1, miR-582-3p, RAB31 | |
| Oral squamous cell carcinoma | Oncogenic | In vitro and in vivo | Promotes cell proliferation, migration, invasion, stemness, tumor growth and metastasis | As a ceRNA | miR-29a, MCL-1; PI3K/AKT pathway | |
| In vitro and in vivo | Promotes cell proliferation, migration, invasion, and tumor growth | Interaction with protein | UPF1, TP63 | |||
| In vitro | Promotes cell proliferation | — | — | |||
| Pancreatic cancer | Oncogenic | In vitro | Promotes cells proliferation, migration, and invasion; inhibits cell apoptosis | As a ceRNA | miR-340-3p, HTR1D; PI3K/AKT pathway |
The biological function and mechanisms of lncRNA HOXA10-AS in multiple human cancersa.
EMT, epithelial-mesenchymal transition; Ref, reference.
FIGURE 6

Primary mechanisms of HOXA10-AS in the occurrence and progression of multiple tumors.
FIGURE 7

Regulatory mechanisms of HOXA10-AS in gastric cancer, pancreatic cancer, esophageal carcinoma, oral squamous cell carcinoma, KMT2A-rearrangede acute myeloid leukemia, lung adenocarcinoma, nasopharyngeal carcinoma, laryngeal squamous cell carcinoma, and gliomas.
4.1 Esophageal carcinoma
ESCA accounted for 4.6% of all cancer-related deaths in 2022, with the highest incidence occurring in East Asia (
4.2 Gastric cancer
GC remains prevalent and is the leading cause of global cancer deaths. The complex molecular characteristics of GC require additional investigation. The current clinical targeted drugs for GC lack single agent frontline efficacy. Therefore, an exploration of non-coding RNAs may provide new targeted choices and improve individual treatments (
4.3 Gliomas
Glioma is the most common malignant primary brain tumor, and it has a high mortality rate. Tumor growth is controlled by targeting various molecules in the signaling pathways combined with immunotherapy (
4.4 KMT2A-rearrangede acute myeloid leukemia
KMT2A-rearrangede acute myeloid leukemia (KMT2A-r AML) is an acute leukemia characterized by a chromosomal translocation of the KMT2A gene, and it has poor outcomes (
4.5 Lung adenocarcinoma
The most typical type of lung cancer is non-small cell lung cancer, LUAD being its most frequently diagnosed subtype (
4.6 Laryngeal squamous cell carcinoma
LSCC is a common head and neck cancer that requires biomarkers for early diagnosis and surveillance of disease recurrence and metastasis (
4.7 Nasopharyngeal carcinoma
NPC is a malignant tumor of the head and neck with unique epidemiological features. It is primarily associated with genetic susceptibility, Epstein-Barr virus infection, and environmental and dietary factors (
4.8 Oral squamous cell carcinoma
OSCC is a common head and neck cancer subtype, and the prospects for long-term patient survival remain dismal (
4.9 Pancreatic cancer
Pancreatic cancer is an insidious and highly malignant cancer that threatens human life. Early screening is crucial and there is an urgent need to find new biomarkers for surveillance (
5 Conclusion and discussion
LncRNAs have received widespread attention in recent years, and the number of identified annotated lncRNAs now exceeds 20,000 (
HOXA10-AS is an emerging lncRNA that has recently attracted much interest in the carcinogenesis field. LncRNA HOXA10-AS exhibits dysregulated expression in pan-cancers (Figure 3) and has been shown to be upregulated in solid and hematological tumors (Table 1). In addition, HOXA10-AS expression levels have been shown to be associated with several cancer clinical features such as malignancy grades, tumor node metastasis stages, and the OS (Table 1). Higher HOXA10-AS expression indicates more advanced cancer degrees in OSCC (
A thorough analysis of the data from the UCSC Xena datasets, showed that HOXA10-AS could be utilized as both a diagnostic and prognostic biomarker for a variety of malignancies. HOXA10-AS has a strong diagnostic potential for differentiating between cancer and normal tissues, especially in ESCA, HNSC, STAD, and THYM. In terms of prognosis, HOXA10-AS showed high expressions in MESO, LUAD, LGG, LAML, and ACC indicated a poor prognosis, except for in UCEC and SKCM, where it is linked to a good prognosis. These results indicated that HOXA10-AS possesses a good diagnostic and prognostic value in cancers and is expected to play a crucial role in personalized diagnosis and treatments.
HOXA10-AS possesses different regulatory mechanisms in advancing cancer progression, as summarized in Figure 6. HOXA10-AS interacts with miRNAs and acts as a ceRNA to sponge miRNAs. This process inhibits miRNA repression of downstream target genes. Additionally, HOXA10-AS has demonstrated direct interactions with RNA and proteins; hence, HOXA10-AS has an influence on transcriptional and post-transcriptional regulation. Moreover, the downstream regulation of HOXA10-AS primarily occurs through the activation of multiple signaling pathways (Figure 7). HOXA10-AS is involved in cancer progression through the activation of the PIK/AKT, NF-κB, Wnt/β-catenin, Notch, MAPK, and Hippo signaling pathways. These mechanistic investigations provide new targets and methods for therapeutic interventions.
Additional research is still required to fully understand the role of HOXA10-AS in cancer. Although the GEPIA2 and UCSC Xena databases showed that HOXA10-AS was differentially expressed in many different tumor tissues, which implies that HOXA10-AS may be involved in cancer progression, some of data were missing in GEPIA2 databases, such as in LUAD. However, a study has been demonstrated that HOXA10-AS expression was upregulated in LUAD tissues and cells, and the upregulated HOXA10-AS could promote cell proliferation and metastasis (
In conclusion, lncRNA HOXA10-AS plays a pivotal role in cancer biology and can be utilized as a potential diagnostic and prognostic biomarker for clinical treatment. HOXA10-AS may also serve as a viable therapeutic target since it influences cancer cellular processes. Moreover, further research into the detailed molecular mechanisms of HOXA10-AS in cancer, as well as clinical trials, is still required.
Statements
Author contributions
XH: Conceptualization, Writing–original draft. YW: Data curation, Formal Analysis, Software, Writing–review and editing. SZ: Validation, Visualization, Writing–review and editing. XG: Data curation, Formal Analysis, Writing–review and editing. XZ: Investigation, Methodology, Writing–review and editing. LL: Conceptualization, Funding acquisition, Supervision, Writing–original draft, Writing–review and editing.
Funding
The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work was supported by the National Natural Science Foundation of China (grant no. 82103131), Shandong Provincial Key Research and Development Plan (Major Science and Technology Innovation Project, grant no. 2022CXGC010510), the Taishan Industrial Experts Program, and the Natural Science Foundation of Shandong Province (grant no. ZR2023MH128).
Conflict of interest
The authors declare that this research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Generative AI statement
The author(s) declare that no Generative AI was used in the creation of this manuscript.
Publisher’s note
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Summary
Keywords
long non-coding RNA, HOXA10-AS, signaling pathway, biomarker, therapeutic target
Citation
Hu X, Wang Y, Zhang S, Gu X, Zhang X and Li L (2025) LncRNA HOXA10-AS as a novel biomarker and therapeutic target in human cancers. Front. Mol. Biosci. 11:1520498. doi: 10.3389/fmolb.2024.1520498
Received
31 October 2024
Accepted
06 December 2024
Published
03 January 2025
Volume
11 - 2024
Edited by
Huan Chen, Zhejiang Chinese Medical University, China
Reviewed by
Virginia Brancato, University Milano Bicocca, Italy
Manuel Beltran Nebot, Sapienza University of Rome, Italy
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Copyright
© 2025 Hu, Wang, Zhang, Gu, Zhang and Li.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Lianlian Li, lilianlian@sdfmu.edu.cn
†These authors have contributed equally to this work
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